HHsearch alignment for GI: 254780924 and conserved domain: PRK10610
>PRK10610 chemotaxis regulatory protein CheY; Provisional.
Probab=95.72 E-value=0.13 Score=27.92 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=70.6
Q ss_pred HHCCCCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHC--CCC
Q ss_conf 847990899719989999999----7699299978999899984893146799993599-689999999999958--988
Q gi|254780924|r 468 KAAGIALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSN--PSI 540 (609)
Q Consensus 468 ~~~~~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~--~~~ 540 (609)
T Consensus 2 ~~k~lrILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~~ 81 (129)
T PRK10610 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSAL 81 (129)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 89998999997989999999999998699789998999999999985899999981899999899999999857777899
Q ss_pred EEEEEE--CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHH
Q ss_conf 089994--6989999999769987876589999999999874
Q gi|254780924|r 541 LIIALA--DSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQ 580 (609)
Q Consensus 541 ~iia~~--~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~ 580 (609)
T Consensus 82 Pii~~T~~~~~~~~~~a~~~Ga~~yl~KP~~-~~~L~~~i~~ 122 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFT-AATLEEKLNK 122 (129)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHH
T ss_conf 6899988689999999998699889989899-9999999999