HHsearch alignment for GI: 254780924 and conserved domain: PRK12460
>PRK12460 2-keto-3-deoxygluconate permease; Provisional.
Probab=98.45 E-value=3.5e-05 Score=52.51 Aligned_cols=279 Identities=17% Similarity=0.137 Sum_probs=134.9
Q ss_pred HHHHHHHHHC---CHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999627---4103855847899-99999999999988254168899984151588998999999999999999996
Q gi|254780924|r 28 GYLVAGILVG---PRTPGFVASQSLV-PALAEIGIILLMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVM 103 (609)
Q Consensus 28 ~~il~GillG---p~~l~~i~~~~~l-~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (609)
T Consensus 14 VPLllgalinTf~P~~l~iGgfTtalf~~Ga~~il~~~l~~~Ga~I~lk~~~~~l~kg~~ll~~K~~i~~~lg~~~~~~~ 93 (308)
T PRK12460 14 VPLVIGALINTFAPQALEIGGFTTALFKNGAAPLLGAFLLCMGAGISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHFF 93 (308)
T ss_pred HHHHHHHHHHHCCCCCHHHCCHHHHHHHCCHHHHHHHHHHHHCCEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999973278620416631787865859899999999177545021308789899999999999999999999982
Q ss_pred CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 78868---999999999742389999876565541144057898998777789999999999861344433013567899
Q gi|254780924|r 104 GWSLG---GSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT 180 (609)
Q Consensus 104 g~~~~---~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~ 180 (609)
T Consensus 94 g~~Gi~GlS~LAiiaa~tnsNggLY~aL~~~YGd~~--------------D~gA~~i~sl~~------------------ 141 (308)
T PRK12460 94 GAEGIFGLSGVAIIAAMSNSNGGLFAALVGEFGNER--------------DVGAISILSLND------------------ 141 (308)
T ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHH--------------HHHHHHHHHHCC------------------
T ss_conf 965624617999999984775899999999809986--------------605775456514------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 99887653210147999999984101000010003445438776420356736899999999999999888--7411002
Q gi|254780924|r 181 SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSS--KLFGVSL 258 (609)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~g~s~ 258 (609)
T Consensus 142 ---------------------------------------------------GPf~TM----l~LG~s-GlA~ip~~~lv~ 165 (308)
T PRK12460 142 ---------------------------------------------------GPFFTM----LALGAA-GMANIPIMALVA 165 (308)
T ss_pred ---------------------------------------------------CCHHHH----HHHHCC-CCCCCCHHHHHH
T ss_conf ---------------------------------------------------709999----999606-467898899999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 46666642220276145689999976689999999988653114798862025677776555422122321100025587
Q gi|254780924|r 259 SLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRS 338 (609)
Q Consensus 259 ~lgaf~aG~~l~~~~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~~~~k~~~~~~~~~~~~~~ 338 (609)
T Consensus 166 ~llPlliG~ilGNLD~--~~r~fl~~~~~~lIpF~~FaLGaginl~~i~~aGl~GIlLgv~~~~~tg~~~~~~dr~~g~~ 243 (308)
T PRK12460 166 VLVPLVLGMILGNLDP--DMRDFLTKGGPLLIPFFAFALGAGINLEMLLQAGLAGILLGVLTTFVGGFFNIRADRLVGGT 243 (308)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHCCCCCEEEEHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999996636888--99998725787352041564027887999998163048999999999839999999995899
Q ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999864-32122025678898876417878668778778889999999999986789
Q gi|254780924|r 339 VATALTIAA-SLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLAEF 397 (609)
Q Consensus 339 ~~~~~~~g~-~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~~~ 397 (609)
T Consensus 244 g~aG~A~sstAGnAvatPa~v-A~~dPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~k 302 (308)
T PRK12460 244 GIAGAAASSTAGNAVATPLAI-AQADPSLAEVAAAAAPLVAASVITTAILTPVLTSWVAK 302 (308)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 722468977777877538999-87490356668999999999999999999999999999