HHsearch alignment for GI: 254780924 and conserved domain: PRK12771
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional.
Probab=95.72 E-value=0.088 Score=29.12 Aligned_cols=82 Identities=12% Similarity=0.246 Sum_probs=56.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEE--------CCCHHHHHHHHHCCCCEEECCCCCHHHHHH---------
Q ss_conf 347817997377489999999984799-08997--------199899999997699299978999899984---------
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVI--------EDSEKKIEELRSLGIDVIYGNATITKILLM--------- 507 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vi--------d~~~~~~~~~~~~g~~~~~gd~~~~~~l~~--------- 507 (609)
T Consensus 265 ~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~Ei~~A~eEGV~~~~~~~p~~-i~~~~g~v~gl~~ 343 (560)
T PRK12771 265 KLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAFEIDDALREGVEINWLRTPVE-VEKDEDGVTGLRV 343 (560)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCEE-EECCCCEEEEEEE
T ss_conf 568868998998228999999997389769998314420289998999878747956896346479-9806985989999
Q ss_pred ----------------CCHHHCCEEEEECCCHHHHHH
Q ss_conf ----------------893146799993599689999
Q gi|254780924|r 508 ----------------ANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 508 ----------------~~i~~a~~vi~~~~~~~~n~~ 528 (609)
T Consensus 344 ~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~ 380 (560)
T PRK12771 344 EKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEF 380 (560)
T ss_pred EEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCH
T ss_conf 9999889988788997267546899992257887300