HHsearch alignment for GI: 254780924 and conserved domain: TIGR00773
>TIGR00773 NhaA Na+/H+ antiporter NhaA; InterPro: IPR004670 The Escherichia coli NhaA Na+:H+ Antiporter (NhaA) protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. ; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane.
Probab=96.46 E-value=0.059 Score=30.29 Aligned_cols=253 Identities=16% Similarity=0.215 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHH----HCCHHH--HHHHHHHHHHHHHHHHHHH-----HHCCCHHH----HHHHHHHHHH
Q ss_conf 9999999988254168899984----151588--9989999999999999999-----96788689----9999999974
Q gi|254780924|r 55 EIGIILLMFGVGLHFSVKDLIS----VRGIAL--PGALIQIILGTALGALMGM-----VMGWSLGG----SVVFGLALSI 119 (609)
Q Consensus 55 ~lgl~~llF~~Gleld~~~l~~----~~~~~~--~~~~~~~~~~~~~~~~~~~-----~lg~~~~~----all~g~~l~~ 119 (609)
T Consensus 59 D~LMAvFFlLiGLEvKrELl~G~L~s~~~A~FP~IAAiGGM~~PaliY~~~n~~dP~~~~GwaIP~ATDIAFALGv~aLL 138 (415)
T TIGR00773 59 DGLMAVFFLLIGLEVKRELLEGALSSLKQAIFPVIAAIGGMIAPALIYLAFNANDPSAREGWAIPAATDIAFALGVLALL 138 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 78999999999889989885210553201035157776356899999999703784100576676077899999999983
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23899998765655411440578989987777899999999998613444330135678999988765321014799999
Q gi|254780924|r 120 ASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMI 199 (609)
Q Consensus 120 ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (609)
T Consensus 139 g------------krVP~~LKvFLlaLAiiDDLGaiViIALF---Yt~~Ls~~~L------------------------- 178 (415)
T TIGR00773 139 G------------KRVPLALKVFLLALAIIDDLGAIVIIALF---YTSDLSVAAL------------------------- 178 (415)
T ss_pred C------------CCCCHHHHHHHHHHHHHHHCCEEEEEEEE---CCCCHHHHHH-------------------------
T ss_conf 5------------88973689999999998517805887430---0363679999-------------------------
Q ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------
Q ss_conf 998410100001000344543877642035673689999999999999988874110024666664222027--------
Q gi|254780924|r 200 TLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAE-------- 271 (609)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~-------- 271 (609)
T Consensus 179 --~~a~~~~~VL~~LN~~~v~~l--------~--~Y~~vG~~-----LW~aVlkSGvHATlAgVi~gF~IPlK~~~g~~~ 241 (415)
T TIGR00773 179 --LVAAVAILVLALLNRLNVRKL--------I--VYLLVGVI-----LWFAVLKSGVHATLAGVIIGFAIPLKGKKGEKS 241 (415)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH--------H--HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf --999999999999845426778--------8--99999999-----999997301789999999986325678887403
Q ss_pred -------------------------------------CCHHHHHHHHHHHHHHHHH-HHH-HHHHHHHCC-HHHHHHHHH
Q ss_conf -------------------------------------6145689999976689999-999-988653114-798862025
Q gi|254780924|r 272 -------------------------------------SELSQSAAQESLPLRDAFS-VLF-FISVGMMFN-PDILISNPI 311 (609)
Q Consensus 272 -------------------------------------~~~~~~~~~~~~~~~~~~~-~~f-Fv~iG~~l~-~~~l~~~~~ 311 (609)
T Consensus 242 vellelGkryaetssGallske~~eilhsieekasal~sPl~~lEH~L~p~~ay~ILPLFAFANAGvSl~G~~~~~~~s~ 321 (415)
T TIGR00773 242 VELLELGKRYAETSSGALLSKEQQEILHSIEEKASALQSPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSINGLTSM 321 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEHHHHHH
T ss_conf 67877533554321124554677899998886667750636763455505889999788886405702312030235635
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC----------CCCHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Q ss_conf 677776555422122321100025----------587999999864321220-256788988764
Q gi|254780924|r 312 LLMMAVIIVIIGKALIAFIVVIAF----------GRSVATALTIAASLSQIG-EFSFILANLGVE 365 (609)
Q Consensus 312 ~~l~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~~~~g~~l~~~g-~~~~v~a~~a~~ 365 (609)
T Consensus 322 l~Lgi~~GL~~GKPlGIf~f~~~a~kL~~a~lP~Gi~f~~I~av~~L-cGIGFTMS~FissLAF~ 385 (415)
T TIGR00773 322 LLLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKHIFAVGVL-CGIGFTMSIFISSLAFG 385 (415)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 67999998860361468899999997120038898628888999999-50047899999876316