HHsearch alignment for GI: 254780924 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.72 E-value=0.00046 Score=44.81 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=29.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEE
Q ss_conf 799737-7489999999984799089971998999999976992999789998999848931467999
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLV 517 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi 517 (609)
T Consensus 3 iLVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~-~~~~d~Vi 69 (328)
T TIGR03466 3 VLVTGATGFVGSAVVRLLLERGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA-LAGCRALF 69 (328)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHH-HHCCCEEE
T ss_conf 99986777999999999997849899998999865565217977998207999999999-71785897