HHsearch alignment for GI: 254780924 and conserved domain: cd05211

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.81  E-value=0.12  Score=28.17  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=66.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEE-CCC----------HHHHHHHHHCCCCEEE--CC-CCCHHHHHHCCHHHCC
Q ss_conf             81799737748999999998479908997-199----------8999999976992999--78-9998999848931467
Q gi|254780924|r  449 DHVILVGYGRIGKVIVQNLKAAGIALLVI-EDS----------EKKIEELRSLGIDVIY--GN-ATITKILLMANIEKAR  514 (609)
Q Consensus       449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vi-d~~----------~~~~~~~~~~g~~~~~--gd-~~~~~~l~~~~i~~a~  514 (609)
T Consensus        24 ~~vaVqGfGnVG~~~a~~l~~~GakvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D   99 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG----LDVD   99 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCC
T ss_conf             999998988999999999998599899998578717789998699999999818965366653059865003----6776


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHCCC
Q ss_conf             999935996899999999999589880899946----9899999997699
Q gi|254780924|r  515 SLVVSISTAFEAAYITQEARNSNPSILIIALAD----SDSEVEHLTRYGA  560 (609)
Q Consensus       515 ~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~----~~~~~~~l~~~Ga  560 (609)
T Consensus       100 IliPaAl~~~I~~~---~a~~i--~ak~I~EgAN~P~t~ea~~iL~~rgI  144 (217)
T cd05211         100 IFAPCALGNVIDLE---NAKKL--KAKVVAEGANNPTTDEALRILHERGI  144 (217)
T ss_pred             EEEECCCCCCCCHH---HHHHH--CCEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf             89642445887989---99871--77289506789989789999997899