HHsearch alignment for GI: 254780924 and conserved domain: cd05211
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.81 E-value=0.12 Score=28.17 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE-CCC----------HHHHHHHHHCCCCEEE--CC-CCCHHHHHHCCHHHCC
Q ss_conf 81799737748999999998479908997-199----------8999999976992999--78-9998999848931467
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVI-EDS----------EKKIEELRSLGIDVIY--GN-ATITKILLMANIEKAR 514 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vi-d~~----------~~~~~~~~~~g~~~~~--gd-~~~~~~l~~~~i~~a~ 514 (609)
T Consensus 24 ~~vaVqGfGnVG~~~a~~l~~~GakvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D 99 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG----LDVD 99 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCC
T ss_conf 999998988999999999998599899998578717789998699999999818965366653059865003----6776
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHCCC
Q ss_conf 999935996899999999999589880899946----9899999997699
Q gi|254780924|r 515 SLVVSISTAFEAAYITQEARNSNPSILIIALAD----SDSEVEHLTRYGA 560 (609)
Q Consensus 515 ~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~----~~~~~~~l~~~Ga 560 (609)
T Consensus 100 IliPaAl~~~I~~~---~a~~i--~ak~I~EgAN~P~t~ea~~iL~~rgI 144 (217)
T cd05211 100 IFAPCALGNVIDLE---NAKKL--KAKVVAEGANNPTTDEALRILHERGI 144 (217)
T ss_pred EEEECCCCCCCCHH---HHHHH--CCEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 89642445887989---99871--77289506789989789999997899