HHsearch alignment for GI: 254780924 and conserved domain: pfam00289
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=94.80 E-value=0.072 Score=29.70 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=59.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEE-CCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 817997377489999999984799089971998999999976992999-7899989998489314679999359968999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIY-GNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~-gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
T Consensus 2 ~kvLIanrGeiA~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~------------------~~Yl~~~ 63 (109)
T pfam00289 2 KKVLVANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPAS------------------ESYLNIE 63 (109)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCC------------------CCCCCHH
T ss_conf 4899988879999999999986997999963344152256650576534799832------------------1113799
Q ss_pred HHHHHHHHHCCCCEEE----EEECCHHHHHHHHHCCCCEEECHH
Q ss_conf 9999999958988089----994698999999976998787658
Q gi|254780924|r 528 YITQEARNSNPSILII----ALADSDSEVEHLTRYGADTVVMSA 567 (609)
Q Consensus 528 ~~~~~~~~~~~~~~ii----a~~~~~~~~~~l~~~Ga~~vi~p~ 567 (609)
T Consensus 64 ~Ii~ia~~~~~~-aihpGyGflsEn~~fa~~~~~~Gi~f-iGPs 105 (109)
T pfam00289 64 RILDIAEKEGAD-AIHPGYGFLSENAEFAEACEKAGITF-IGPS 105 (109)
T ss_pred HHHHHHHHHCCC-EEECCCCCCCCCHHHHHHHHHCCCEE-ECCC
T ss_conf 999999981889-68779762335999999999888989-9958