HHsearch alignment for GI: 254780924 and conserved domain: pfam00999
>pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.
Probab=100.00 E-value=0 Score=344.10 Aligned_cols=364 Identities=30% Similarity=0.443 Sum_probs=300.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHH
Q ss_conf 99999999999998708886799999999627410385584-78999999999999998825416889998415158899
Q gi|254780924|r 6 WGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVAS-QSLVPALAEIGIILLMFGVGLHFSVKDLISVRGIALPG 84 (609)
Q Consensus 6 ~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~-~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~ 84 (609)
T Consensus 3 iil~~a~~~~~l~~rl~lP~ivg~il~GillGp~~l~~~~~~~~~~~~l~~lgl~~llF~~Gl~l~~~~l~~~~~~~~~~ 82 (371)
T pfam00999 3 LLILLALLAGLLARRLGLPPVVGLILAGILLGPSGLGLVEPDELDLEVLAELGLPFLLFLAGLELDLRELRKNGKSILLL 82 (371)
T ss_pred EEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 63009999999999979979999999999983633167775425899999999999999999789999999855799999
Q ss_pred HHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999---967886899999999974238999987656554114405789899877778999999999
Q gi|254780924|r 85 ALIQIILGTALGALMGM---VMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLI 161 (609)
Q Consensus 85 ~~~~~~~~~~~~~~~~~---~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il 161 (609)
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ls~ts~~vv~~il~~~~~~~~~~~~~~l~~~~~~D~~~iil~~v~ 162 (371)
T pfam00999 83 ALLGVLLPFLLIGLLLALLGGLGIPLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVL 162 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999847658999999999970228899887875166775999999999999869999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 98613444330135678999988765321014799999998410100001000344543877642035673689999999
Q gi|254780924|r 162 PAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLA 241 (609)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (609)
T Consensus 163 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 219 (371)
T pfam00999 163 LALAGVGGLSDLGLLL---------------------LIFLVVALGGLLLGLVFGWLLRLITRFT--SGDRELEVLLVLA 219 (371)
T ss_pred HHHHCCCCCHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHH
T ss_conf 9997177515799999---------------------9999999999999999999999999970--4650799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998887411002466666422202761456899999766-89999999988653114798862025677776555
Q gi|254780924|r 242 IALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPL-RDAFSVLFFISVGMMFNPDILISNPILLMMAVIIV 320 (609)
Q Consensus 242 ~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~-~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~ 320 (609)
T Consensus 220 ~~~-~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~~~~~~~~~~p~fF~~~G~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
T pfam00999 220 LAL-LAALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLEPFGYGLFLPLFFVLVGLSLDLSLLLSLLLLVLLLLVAI 298 (371)
T ss_pred HHH-HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 999-9999986336216899999999964776206799999999999999999999998726887888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4221223211000255879999998643212202567889887641787866877877888999999999998
Q gi|254780924|r 321 IIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFV 393 (609)
Q Consensus 321 ~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~ 393 (609)
T Consensus 299 ~~~k~~~~~~~~~~~~~~~~~~l~~g~~l~~rg~~~l~la~~~~~~~~i~~~~~~~~v~~~l~t~~i~P~l~k 371 (371)
T pfam00999 299 LLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSLALAAIGLQLGLIDRELYTLLVAVVLLTTLLKPLLKK 371 (371)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999909988899999999999999999999999987999988999999999999999998629