HHsearch alignment for GI: 254780924 and conserved domain: pfam03616
>pfam03616 Glt_symporter Sodium/glutamate symporter.
Probab=97.93 E-value=0.0017 Score=40.88 Aligned_cols=277 Identities=16% Similarity=0.106 Sum_probs=134.8
Q ss_pred HHHHCCCCHHH--HHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH--
Q ss_conf 99870888679--99999996274103855847899999999999999882541688999841515889989999999--
Q gi|254780924|r 17 IANRCRLPTLI--GYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRGIALPGALIQIILG-- 92 (609)
Q Consensus 17 la~rl~lP~i~--~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~~~~~~~~~-- 92 (609)
T Consensus 28 ~L~~~~IP~pViGGll~ail~~~~~~~~~~~~~fd~~-l~~~lm~~FFttiGl~a~~~~lk~gG~~l~~~l~~~~~~~~~ 106 (368)
T pfam03616 28 FLKKFNIPEPVVGGLIVAILLLLLRKFGGTDINFDAS-LQDPLMLAFFTTIGLSANLKLLIKGGKPLLLFLAAAAILIVI 106 (368)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987089656799999999999884237668880600-677999999998454588088987559999999999999999
Q ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHH-HHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -9999999999678868999999999742--3899-99876565-54114405789899877778999999999986134
Q gi|254780924|r 93 -TALGALMGMVMGWSLGGSVVFGLALSIA--STVV-LLKALQEN-RILETDRGKIAVGWLIVEDLIIVLALVLIPAAATN 167 (609)
Q Consensus 93 -~~~~~~~~~~lg~~~~~all~g~~l~~t--s~~v-v~~~l~~~-~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~ 167 (609)
T Consensus 107 Qn~vGv~la~~~gl~P~~Gl~~Gsisl~GGHGTAaA~g~~f~e~~G~~~----A~~lg~a~------------------- 163 (368)
T pfam03616 107 QNAVGVSMASLLGLDPLLGLLAGSITLSGGHGTAAAWGPTFADLYGIQN----ALEIAMAC------------------- 163 (368)
T ss_pred HHHHHHHHHHHHCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCHHH----HHHHHHHH-------------------
T ss_conf 9999999999938981565642663102777389988999998618433----89999999-------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-------------HHH--HCCCCCH
Q ss_conf 4433013567899998876532101479999999841010000100034454387-------------764--2035673
Q gi|254780924|r 168 YSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWI-------------LHM--IFYTGSR 232 (609)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~~~ 232 (609)
T Consensus 164 ---------------AT------------~GLV~g~liGGPia~~LI~k~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 216 (368)
T pfam03616 164 ---------------AT------------FGLVFGGIIGGPVARYLIKRNSLKPQPECDTRDDALQEAFERPQEKRKITA 216 (368)
T ss_pred ---------------HH------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf ---------------99------------999999984089999999946999998765322233211137653466489
Q ss_pred H--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCCHH---HH-HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6--89999999999999988874-----1100246666642220276145---68-999997668999999998865311
Q gi|254780924|r 233 E--LFRLGVLAIALGFAYGSSKL-----FGVSLSLGAFFAGMILAESELS---QS-AAQESLPLRDAFSVLFFISVGMMF 301 (609)
Q Consensus 233 ~--~~~~~~l~~~~~~~~~~~~~-----~g~s~~lgaf~aG~~l~~~~~~---~~-~~~~~~~~~~~~~~~fFv~iG~~l 301 (609)
T Consensus 217 ~~~~~~~~~i~i~~~iG~~i~~~~~~~~~~lP~fv~~m~~giiirNi~~~~~~~~i~~~~i~~ig~vsL~lFLamaLmsL 296 (368)
T pfam03616 217 NVLIETIAIILICLVVGKYLSDLVKGTGLMLPTFVWCLFVGVILRNTLSLAFKFRVFEPAVDVLGDVSLSLFLAMALMSL 296 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999997283878279999999999999998567467879999998789999999999880
Q ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 47988620256777765554-22122321100025587999999
Q gi|254780924|r 302 NPDILISNPILLMMAVIIVI-IGKALIAFIVVIAFGRSVATALT 344 (609)
Q Consensus 302 ~~~~l~~~~~~~l~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~ 344 (609)
T Consensus 297 ~Lw~L~~la~Pl~iiL~~Q~i~~~lf~~fV~Fr~mGkdYdAAVm 340 (368)
T pfam03616 297 KLWELADLALPLLIILAVQVVVMVLFAIFVTFRLMGKDYDAAVL 340 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 69999988999999999999999999999867752776379999