HHsearch alignment for GI: 254780924 and conserved domain: pfam03956
>pfam03956 DUF340 Membrane protein of unknown function (DUF340). Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=97.45 E-value=0.0048 Score=37.83 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=67.0
Q ss_pred HHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999962741038558478999999999999998825416-----889998415158899899999999999999999
Q gi|254780924|r 28 GYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHF-----SVKDLISVRGIALPGALIQIILGTALGALMGMV 102 (609)
Q Consensus 28 ~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Glel-----d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (609)
T Consensus 3 ~~~i~G~i~G~~~~--~-~~~~~~~~~~~~L~~Llf~vGi~lg~~~~~~~~i~~~~~~~llip~~~i~gsl~gg~i~s~~ 79 (191)
T pfam03956 3 AAVILGFILGLFLK--P-PFSLSDNASTYLLYLLLFLIGIQLGNSGISLRQILKLNKKGLLIPLVTILGSLLGGLIAALI 79 (191)
T ss_pred EEHHHHHHHHHHCC--C-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52765887986306--7-62210058999999999999898167853499999757138899999999999999999999
Q ss_pred HCCCHHHHHHHHHHHH
Q ss_conf 6788689999999997
Q gi|254780924|r 103 MGWSLGGSVVFGLALS 118 (609)
Q Consensus 103 lg~~~~~all~g~~l~ 118 (609)
T Consensus 80 l~~~~~~~lAv~sGfG 95 (191)
T pfam03956 80 LGIPLKQGLAVASGFG 95 (191)
T ss_pred HCCCHHHHHHHHHCCC
T ss_conf 4899999999972675