HHsearch alignment for GI: 254780924 and conserved domain: pfam06826
>pfam06826 Asp-Al_Ex Predicted Permease Membrane Region. This family represents five transmembrane helices that are normally found flanking (five either side) a pair of pfam02080 domains. This suggests that the paired regions form a ten helical structure, probably forming the pore, whereas the pfam02080) binds a ligand for export or regulation of the pore. A member from Tetragenococcus halophilus is described as a aspartate-alanine antiporter. In conjunction with L-aspartate-beta-decarboxylase it forms a 'proton motive metabolic cycle catalysed by an aspartate-alanine exchange'. The general conservation of domain architecture in this family suggests that they are functional orthologues.
Probab=96.03 E-value=0.098 Score=28.79 Aligned_cols=120 Identities=23% Similarity=0.287 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHH
Q ss_conf 999999999999998--7088867999999996274103--855847899999999999999882541688999---841
Q gi|254780924|r 5 IWGFVLAFIFGAIAN--RCRLPTLIGYLVAGILVGPRTP--GFVASQSLVPALAEIGIILLMFGVGLHFSVKDL---ISV 77 (609)
Q Consensus 5 ~~~l~~a~i~g~la~--rl~lP~i~~~il~GillGp~~l--~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l---~~~ 77 (609)
T Consensus 3 fl~ialG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~g~~~~~~~~~~~~~~l~~lGL~lFl~~vGl~aG~~f~~~l~~~ 82 (169)
T pfam06826 3 FLGIALGLLLGRIKIKGGFSLGVAGGVLIVGLLLGHLGSTGPTFMPFSALSFLRELGLALFLAAVGLSAGPGFFSSLKKD 82 (169)
T ss_pred EHHHHHHHHHCCEEECCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13998988672111304444461279999999999731336787891089999999999999999998899999999984
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 51588998999999999999999-99678868999999999-742389999
Q gi|254780924|r 78 RGIALPGALIQIILGTALGALMG-MVMGWSLGGSVVFGLAL-SIASTVVLL 126 (609)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-~~lg~~~~~all~g~~l-~~ts~~vv~ 126 (609)
T Consensus 83 G~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~--G~~aGa~Tstp~L~ 131 (169)
T pfam06826 83 GLLLVGLALLITVVPLLIALVLGKYVFKIDPGLAA--GLLAGALTNTPALG 131 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHCCCCCHHHHH
T ss_conf 59999999999999999999999999399988999--99754041609999