HHsearch alignment for GI: 254780925 and conserved domain: COG0341
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=414.60 Aligned_cols=294 Identities=41% Similarity=0.756 Sum_probs=264.4
Q ss_pred CCCCEEECCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 12200100222102211001100212221122223455555660379997177578899988555542002333235687
Q gi|254780925|r 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614 (833)
Q Consensus 535 ~~~~~i~f~~~~~~~~~~s~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (833)
T Consensus 5 ~~~~~~~f~~~~~~~~~is~~l~v~~i~~~~~~g~n~GiDF~GGt~i~~~~~~~~~~~~vr~~l~~~~~~~~~v~~~gs~ 84 (305)
T COG0341 5 PGKGDIDFMKLRKLALGISLALLVISILFIGTRGLNLGIDFTGGTVIELQYEQTADLDQVRSRLEKLGIGDVQVQSFGSS 84 (305)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 66662002457899999999999999998522674112782695289983477688899999998647876447863887
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64024431155542023567887775410124443333211121013578998457999999999999999999999899
Q gi|254780925|r 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 (833)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~al~~I~i~i~~rf~~~~~i 694 (833)
T Consensus 85 ~~v~Ir~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Vgp~vg~eL~~~~~~Al~~ali~I~iYV~~RFe~~~a~ 161 (305)
T COG0341 85 GDVLIRVPTQEGGEDLGNKVKEKLKED---LDPSGEVRSVEFVGPTVGKELARQGLLALLLALVGILIYVFFRFEWRFAL 161 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC---CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHH
T ss_conf 727999448776267999999986301---48875332213789525899999899999999999987543010237799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999997571456999999999975335747887210355550577999899999999877799999
Q gi|254780925|r 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 (833)
Q Consensus 695 ~aiial~~~v~~~~g~~~~~g~~~~~~~i~~~l~iiG~svd~~I~~~~RirE~~~~~~~~~~~~~~v~~~~~~~~~~~i~ 774 (833)
T Consensus 162 aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~-~~~~~~~iin~si~qTlsRti~ 240 (305)
T COG0341 162 AAILALLHDVIITLGFFSLFGIEFNLATIAALLTIIGYSVNDTIVVFDRIRENLRKY-RRETLREIINTSINQTLTRTIN 240 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHEEECCCCEEEEEHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998850343499999999980120377699876888887660-2687899999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999705343566389999999999999999999999998630122036
Q gi|254780925|r 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 (833)
Q Consensus 775 ts~tt~~~~~~l~~~~~~~~~~f~~~~~~gvi~~~~~sifi~~~~~~~~~~~~~k~~~ 832 (833)
T Consensus 241 Ts~ttll~v~~l~~fgg~~l~~fa~~llvGii~gtySSifiA~pll~~~~~~~~~~~~ 298 (305)
T COG0341 241 TSVTTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFIAAPLLLLLGKRREKKKA 298 (305)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999807258999899999999997773999999999998875751346