HHsearch alignment for GI: 254780925 and conserved domain: COG0841
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms].
Probab=99.97 E-value=1.1e-27 Score=181.25 Aligned_cols=466 Identities=12% Similarity=0.026 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 7999999999999999996310243404457420476742211012785499998433675189887899999998620-
Q gi|254780925|r 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK- 83 (833)
Q Consensus 5 ~~~~il~~~i~l~g~~~~lp~~~~~~~~~~~P~~~p~~~i~lGLDL~GG~~v~~~~~~~~~~~~~v~~~~e~l~~~v~~- 83 (833)
T Consensus 521 ~~~~~~~~l~~~~~~~~----l~~~vp~~F~P~~D~-----------g~~~v~~~~-P~g~sl~~t~~~~~~ve~~~~~~ 584 (1009)
T COG0841 521 RALVLLLYLVLLGGSVL----LFLKLPKSFLPEEDQ-----------GEFMVQVQL-PEGASLERTAEVVRQVEDWLLIL 584 (1009)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCCC-----------CEEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999999----998678773786676-----------869999988-99988999999999999998741
Q ss_pred --CCCEEEEEEEE-------CCEEEEEECCCCC-----HHHHHHHHHHHHHHHHHHC-CCCCCCCCEECCCC-CCCEEEE
Q ss_conf --59126589831-------9979999669767-----8999999999999874417-65445773142367-7511687
Q gi|254780925|r 84 --EGIGVFSMRQI-------QNKITLSFADSRF-----KENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTE-KEISIVL 147 (833)
Q Consensus 84 --~~~~~sts~~~-------~~~I~V~f~~~~d-----~~~a~~~v~~~v~~~~~~l-p~~~~~~~~~~~~~-~~~~~~~ 147 (833)
T Consensus 585 ~~~~v~~v~~~~G~g~~~~~~~~~~~~Lk~~~er~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 663 (1009)
T COG0841 585 EKPEVESVFTVVGFGSGQNNAGRAFVSLKPWSERKENSAQAIIARLTKELAKI-PDATVFAFTPPAVDGLGQGSGFPFQL 663 (1009)
T ss_pred CCCCEEEEEEEECCCCCCCCCCEEEEECCCHHHCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCCCCCCCCCCCEEE
T ss_conf 59871699998456777777615999448735355655789999999875047-75311014787644578899854799
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 51345665126898778887631123103465421012573012333468988985412698999888740012344455
Q gi|254780925|r 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 (833)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (833)
T Consensus 664 ~~~g~--d~~~l~~----~a~~~~~~~~~~p~~~v~~~~~~~~p~l~i~iDr~ka~~lGvs~~~I~~tL~~~~~g~~v~~ 737 (1009)
T COG0841 664 RDRGG--DLEALRQ----AANQLLEKANQSPLLNVRSDLLPDTPQLQVDIDRDKAAALGVSLQDIAQTLQSALGGTYVND 737 (1009)
T ss_pred EEECC--CHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 99489--9999999----99999999860897300378887886499876799998849999999999999967973315
Q ss_pred CCCCCCCCCCCCEEECCCCCEEECCEECCCCCCCCCCCCCCCEECCCC-CCCCC-HHHCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 565334666651000267501202111011112233332210000123-32210-1100100000123221100000013
Q gi|254780925|r 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD-EMGAR-RFFEVTRDNIGKPLAVVLDGRVLTA 305 (833)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (833)
T Consensus 738 ~~~~~~~~~V~~~~~~~~----------------R-~~~~~l~~l~v~~~~G~~vpLs~va~~~~~~~p~~i~r~n~~~s 800 (1009)
T COG0841 738 FRDDGRVYKVVVQADAEF----------------R-SDPEDLGKLYVRSADGAMVPLSAFATIRWEYGPPRIVRYNGLPS 800 (1009)
T ss_pred EECCCCEEEEEEECCHHH----------------C-CCHHHHHCEEEECCCCCEEECHHEEEEEEECCCCEEEEECCCEE
T ss_conf 732880888999749354----------------5-89888710388669998776014078787058972896279468
Q ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 32000123334432101357887654443211000012233333201100110245788888899999999999973032
Q gi|254780925|r 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 (833)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r 385 (833)
T Consensus 801 vti~~~~~~g---~s~g~a~~~v~~---~~~~~~lp~g~~~~~~G~~~~~~~s~~~~~~~~~lai~~vylvL~~qfeS~~ 874 (1009)
T COG0841 801 VTISGNLAPG---VSSGDAMAAMEK---LAAELPLPSGYTYEWSGESEQEKEAGGQALLLFALALLVVFLVLAAQYESFS 874 (1009)
T ss_pred EEEEEECCCC---CCHHHHHHHHHH---HHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999866999---887999999999---8752479996599856459999986647999999999999999999985367
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 03566667777778899999999876655789999998653357899999998763102555799999999999999997
Q gi|254780925|r 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 (833)
Q Consensus 386 ~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~i~~ 465 (833)
T Consensus 875 ~P~~Il~tvPla~iGa~~aL~l~g~~~~v~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlM 954 (1009)
T COG0841 875 IPFIVMLTVPLGLLGALLALLLTGLPLDVYAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILM 954 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 77999988868999999999995899777899999999999972838995489999986999899999999872428999
Q ss_pred HHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6556899988876145---54431147887788899877775113999999861
Q gi|254780925|r 466 SNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 (833)
Q Consensus 466 ~~~t~~~~~~~l~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (833)
T Consensus 955 Ttla~ilG~iPLal~~g~Ga~~r~~lgi~viGGl~~sT~LtL~~vPv~Y~~~~~ 1008 (1009)
T COG0841 955 TSLAAILGVLPLALSTGAGAESRQPLGIAVVGGLLVATVLTLFVVPVFYVLVER 1008 (1009)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999988511465345516836865114799999999999999886104