HHsearch alignment for GI: 254780925 and conserved domain: COG0841

>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms].
Probab=99.97  E-value=1.1e-27  Score=181.25  Aligned_cols=466  Identities=12%  Similarity=0.026  Sum_probs=247.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             7999999999999999996310243404457420476742211012785499998433675189887899999998620-
Q gi|254780925|r    5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK-   83 (833)
Q Consensus         5 ~~~~il~~~i~l~g~~~~lp~~~~~~~~~~~P~~~p~~~i~lGLDL~GG~~v~~~~~~~~~~~~~v~~~~e~l~~~v~~-   83 (833)
T Consensus       521 ~~~~~~~~l~~~~~~~~----l~~~vp~~F~P~~D~-----------g~~~v~~~~-P~g~sl~~t~~~~~~ve~~~~~~  584 (1009)
T COG0841         521 RALVLLLYLVLLGGSVL----LFLKLPKSFLPEEDQ-----------GEFMVQVQL-PEGASLERTAEVVRQVEDWLLIL  584 (1009)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCCC-----------CEEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             89999999999999999----998678773786676-----------869999988-99988999999999999998741


Q ss_pred             --CCCEEEEEEEE-------CCEEEEEECCCCC-----HHHHHHHHHHHHHHHHHHC-CCCCCCCCEECCCC-CCCEEEE
Q ss_conf             --59126589831-------9979999669767-----8999999999999874417-65445773142367-7511687
Q gi|254780925|r   84 --EGIGVFSMRQI-------QNKITLSFADSRF-----KENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTE-KEISIVL  147 (833)
Q Consensus        84 --~~~~~sts~~~-------~~~I~V~f~~~~d-----~~~a~~~v~~~v~~~~~~l-p~~~~~~~~~~~~~-~~~~~~~  147 (833)
T Consensus       585 ~~~~v~~v~~~~G~g~~~~~~~~~~~~Lk~~~er~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~  663 (1009)
T COG0841         585 EKPEVESVFTVVGFGSGQNNAGRAFVSLKPWSERKENSAQAIIARLTKELAKI-PDATVFAFTPPAVDGLGQGSGFPFQL  663 (1009)
T ss_pred             CCCCEEEEEEEECCCCCCCCCCEEEEECCCHHHCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCCCCCCCCCCCEEE
T ss_conf             59871699998456777777615999448735355655789999999875047-75311014787644578899854799


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             51345665126898778887631123103465421012573012333468988985412698999888740012344455
Q gi|254780925|r  148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM  227 (833)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (833)
T Consensus       664 ~~~g~--d~~~l~~----~a~~~~~~~~~~p~~~v~~~~~~~~p~l~i~iDr~ka~~lGvs~~~I~~tL~~~~~g~~v~~  737 (1009)
T COG0841         664 RDRGG--DLEALRQ----AANQLLEKANQSPLLNVRSDLLPDTPQLQVDIDRDKAAALGVSLQDIAQTLQSALGGTYVND  737 (1009)
T ss_pred             EEECC--CHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             99489--9999999----99999999860897300378887886499876799998849999999999999967973315


Q ss_pred             CCCCCCCCCCCCEEECCCCCEEECCEECCCCCCCCCCCCCCCEECCCC-CCCCC-HHHCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf             565334666651000267501202111011112233332210000123-32210-1100100000123221100000013
Q gi|254780925|r  228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD-EMGAR-RFFEVTRDNIGKPLAVVLDGRVLTA  305 (833)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  305 (833)
T Consensus       738 ~~~~~~~~~V~~~~~~~~----------------R-~~~~~l~~l~v~~~~G~~vpLs~va~~~~~~~p~~i~r~n~~~s  800 (1009)
T COG0841         738 FRDDGRVYKVVVQADAEF----------------R-SDPEDLGKLYVRSADGAMVPLSAFATIRWEYGPPRIVRYNGLPS  800 (1009)
T ss_pred             EECCCCEEEEEEECCHHH----------------C-CCHHHHHCEEEECCCCCEEECHHEEEEEEECCCCEEEEECCCEE
T ss_conf             732880888999749354----------------5-89888710388669998776014078787058972896279468


Q ss_pred             CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             32000123334432101357887654443211000012233333201100110245788888899999999999973032
Q gi|254780925|r  306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK  385 (833)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r  385 (833)
T Consensus       801 vti~~~~~~g---~s~g~a~~~v~~---~~~~~~lp~g~~~~~~G~~~~~~~s~~~~~~~~~lai~~vylvL~~qfeS~~  874 (1009)
T COG0841         801 VTISGNLAPG---VSSGDAMAAMEK---LAAELPLPSGYTYEWSGESEQEKEAGGQALLLFALALLVVFLVLAAQYESFS  874 (1009)
T ss_pred             EEEEEECCCC---CCHHHHHHHHHH---HHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999866999---887999999999---8752479996599856459999986647999999999999999999985367


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             03566667777778899999999876655789999998653357899999998763102555799999999999999997
Q gi|254780925|r  386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD  465 (833)
Q Consensus       386 ~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~i~~  465 (833)
T Consensus       875 ~P~~Il~tvPla~iGa~~aL~l~g~~~~v~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlM  954 (1009)
T COG0841         875 IPFIVMLTVPLGLLGALLALLLTGLPLDVYAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILM  954 (1009)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             77999988868999999999995899777899999999999972838995489999986999899999999872428999


Q ss_pred             HHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6556899988876145---54431147887788899877775113999999861
Q gi|254780925|r  466 SNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR  516 (833)
Q Consensus       466 ~~~t~~~~~~~l~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (833)
T Consensus       955 Ttla~ilG~iPLal~~g~Ga~~r~~lgi~viGGl~~sT~LtL~~vPv~Y~~~~~ 1008 (1009)
T COG0841         955 TSLAAILGVLPLALSTGAGAESRQPLGIAVVGGLLVATVLTLFVVPVFYVLVER 1008 (1009)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999988511465345516836865114799999999999999886104