HHsearch alignment for GI: 254780925 and conserved domain: PRK08343
>PRK08343 secD preprotein translocase subunit SecD; Reviewed.
Probab=100.00 E-value=0 Score=358.95 Aligned_cols=387 Identities=24% Similarity=0.322 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 17999999999999999996310243404457420476742211012785499998433675189887899999998620
Q gi|254780925|r 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83 (833)
Q Consensus 4 ~~~~~il~~~i~l~g~~~~lp~~~~~~~~~~~P~~~p~~~i~lGLDL~GG~~v~~~~~~~~~~~~~v~~~~e~l~~~v~~ 83 (833)
T Consensus 9 ~nwr~~~~~~~~~~s~~~~~~~~~~----------~~~~~i~lGLDLqGG~~v~l~~~~-~~~~~~~~~~~~ii~~Rvn~ 77 (414)
T PRK08343 9 KNWRVILLIVLVIASIVAIAPGGDA----------AGTTGLQFGLDLSGGSWIQLKLEG-PVSADTMDTVVEILESRLNA 77 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC----------CCCCCCCCCEECCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 6479999999999999997355554----------677786346775896699998179-99999999999999986762
Q ss_pred CCCEEEEEEEEC-CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 591265898319-9799996697678999999999999874417654457731423677511687513456651268987
Q gi|254780925|r 84 EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162 (833)
Q Consensus 84 ~~~~~sts~~~~-~~I~V~f~~~~d~~~a~~~v~~~v~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (833)
T Consensus 78 lGvsE~~Iq~~G~~rI~VelPGv-d~~~a~~lig~ta~l~f~----------~-~~~~~~~~~~l~---G~di~------ 136 (414)
T PRK08343 78 LGLKDIKVRPVGDQYIVVEVAGV-DLEQAKEIIEKQGVFEAR----------I-QTTGNENETVLT---GDDIV------ 136 (414)
T ss_pred CCCCCCEEEEECCCEEEEECCCC-CHHHHHHHHCCCCEEEEE----------E-CCCCCCCCEEEC---CCCCC------
T ss_conf 38988769996695699986999-999999986386658999----------6-258888736753---74434------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 78887631123103465421012573012333468988985412698999888740012344455565334666651000
Q gi|254780925|r 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 (833)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (833)
T Consensus 137 -------------~~~~-~~~~~~g~--~~V------------------------------------------------- 151 (414)
T PRK08343 137 -------------SVGS-PSQDPSGS--WGV------------------------------------------------- 151 (414)
T ss_pred -------------CCCC-CCCCCCCC--EEE-------------------------------------------------
T ss_conf -------------4665-67588997--048-------------------------------------------------
Q ss_pred CCCCCEEECCEECCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCHHH----CCCCCCCCCCCCCCCCCCEEECCC-----
Q ss_conf 26750120211101111223333221000012332210110010000----012322110000001332000123-----
Q gi|254780925|r 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN----IGKPLAVVLDGRVLTAPVINQAIP----- 313 (833)
Q Consensus 243 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----- 313 (833)
T Consensus 152 ----------------------------~~~~~~eGa~~f~~~T~~~~~~~~g~~lai~lDg~visap~v~~~i~~g~~~ 203 (414)
T PRK08343 152 ----------------------------PFRLSEDGAEKFAEVAIGKGDNPDGHPLDMYLDGELVSSAPLSPGLASGLPS 203 (414)
T ss_pred ----------------------------EEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEECCEECHHHCCCCCC
T ss_conf ----------------------------9998917999999999874246767669999728386343441432477445
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf -----334432101357887654443211000012233333201100110245788888899999999999973032035
Q gi|254780925|r 314 -----SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 (833)
Q Consensus 314 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~l 388 (833)
T Consensus 204 ~~~~i~~~~~itg~~~~~eA~~LA~~L~sGaLPv~l~i~~~~tVgptLG~~~i~~gi~AgiiglilV~lfm~~~Yr~~G~ 283 (414)
T PRK08343 204 GPVVITVASTGTTEEAEEEAKELYIHLRAGALPVKVDIEGSGSVSPTLGEQFKKGSLIAGLLALLAVAAVVYLRYREPKI 283 (414)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53353025304586549999999999865998886046666887776659999999999999999999999999988899
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 666677--777788999999998766557899999986533578999999987631025557999999999999999976
Q gi|254780925|r 389 VADFSI--FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 (833)
Q Consensus 389 i~~iaI--pisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~ 466 (833)
T Consensus 284 va~i~l~~~~~v~ill~~~~~~g~tLTLpGIAGiILtIGmaVDaNVlI~eei~~e~--~~~~~~ai~~g~~~Af~tI~da 361 (414)
T PRK08343 284 VLPMVFTSLSEVIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVLAEG--KVPSRKVFLKRIKRAFFIIFAA 361 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHEEEECCCEEEEHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999856423299999988741022216288758877523--6544578999999999999998
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 556899988876145544311478877888998777751139999998613
Q gi|254780925|r 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 (833)
Q Consensus 467 ~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (833)
T Consensus 362 niTTliaa~iL~~~GtG~VkGFA~TL~iGIl~s~f~Trp~~~~i~r~l~~~ 412 (414)
T PRK08343 362 AATTIAAMSPLAVMGLGTLKGFAITTILGVLIGVLITRPAYGDIIKYLLGK 412 (414)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHCC
T ss_conf 799999999999983778039999999988942446189999999998457