HHsearch alignment for GI: 254780925 and conserved domain: PRK08343

>PRK08343 secD preprotein translocase subunit SecD; Reviewed.
Probab=100.00  E-value=0  Score=358.95  Aligned_cols=387  Identities=24%  Similarity=0.322  Sum_probs=272.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             17999999999999999996310243404457420476742211012785499998433675189887899999998620
Q gi|254780925|r    4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK   83 (833)
Q Consensus         4 ~~~~~il~~~i~l~g~~~~lp~~~~~~~~~~~P~~~p~~~i~lGLDL~GG~~v~~~~~~~~~~~~~v~~~~e~l~~~v~~   83 (833)
T Consensus         9 ~nwr~~~~~~~~~~s~~~~~~~~~~----------~~~~~i~lGLDLqGG~~v~l~~~~-~~~~~~~~~~~~ii~~Rvn~   77 (414)
T PRK08343          9 KNWRVILLIVLVIASIVAIAPGGDA----------AGTTGLQFGLDLSGGSWIQLKLEG-PVSADTMDTVVEILESRLNA   77 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC----------CCCCCCCCCEECCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHH
T ss_conf             6479999999999999997355554----------677786346775896699998179-99999999999999986762


Q ss_pred             CCCEEEEEEEEC-CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf             591265898319-9799996697678999999999999874417654457731423677511687513456651268987
Q gi|254780925|r   84 EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ  162 (833)
Q Consensus        84 ~~~~~sts~~~~-~~I~V~f~~~~d~~~a~~~v~~~v~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (833)
T Consensus        78 lGvsE~~Iq~~G~~rI~VelPGv-d~~~a~~lig~ta~l~f~----------~-~~~~~~~~~~l~---G~di~------  136 (414)
T PRK08343         78 LGLKDIKVRPVGDQYIVVEVAGV-DLEQAKEIIEKQGVFEAR----------I-QTTGNENETVLT---GDDIV------  136 (414)
T ss_pred             CCCCCCEEEEECCCEEEEECCCC-CHHHHHHHHCCCCEEEEE----------E-CCCCCCCCEEEC---CCCCC------
T ss_conf             38988769996695699986999-999999986386658999----------6-258888736753---74434------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             78887631123103465421012573012333468988985412698999888740012344455565334666651000
Q gi|254780925|r  163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL  242 (833)
Q Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (833)
T Consensus       137 -------------~~~~-~~~~~~g~--~~V-------------------------------------------------  151 (414)
T PRK08343        137 -------------SVGS-PSQDPSGS--WGV-------------------------------------------------  151 (414)
T ss_pred             -------------CCCC-CCCCCCCC--EEE-------------------------------------------------
T ss_conf             -------------4665-67588997--048-------------------------------------------------


Q ss_pred             CCCCCEEECCEECCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCHHH----CCCCCCCCCCCCCCCCCCEEECCC-----
Q ss_conf             26750120211101111223333221000012332210110010000----012322110000001332000123-----
Q gi|254780925|r  243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN----IGKPLAVVLDGRVLTAPVINQAIP-----  313 (833)
Q Consensus       243 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----  313 (833)
T Consensus       152 ----------------------------~~~~~~eGa~~f~~~T~~~~~~~~g~~lai~lDg~visap~v~~~i~~g~~~  203 (414)
T PRK08343        152 ----------------------------PFRLSEDGAEKFAEVAIGKGDNPDGHPLDMYLDGELVSSAPLSPGLASGLPS  203 (414)
T ss_pred             ----------------------------EEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEECCEECHHHCCCCCC
T ss_conf             ----------------------------9998917999999999874246767669999728386343441432477445


Q ss_pred             -----CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             -----334432101357887654443211000012233333201100110245788888899999999999973032035
Q gi|254780925|r  314 -----SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL  388 (833)
Q Consensus       314 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~l  388 (833)
T Consensus       204 ~~~~i~~~~~itg~~~~~eA~~LA~~L~sGaLPv~l~i~~~~tVgptLG~~~i~~gi~AgiiglilV~lfm~~~Yr~~G~  283 (414)
T PRK08343        204 GPVVITVASTGTTEEAEEEAKELYIHLRAGALPVKVDIEGSGSVSPTLGEQFKKGSLIAGLLALLAVAAVVYLRYREPKI  283 (414)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             53353025304586549999999999865998886046666887776659999999999999999999999999988899


Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             666677--777788999999998766557899999986533578999999987631025557999999999999999976
Q gi|254780925|r  389 VADFSI--FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS  466 (833)
Q Consensus       389 i~~iaI--pisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~  466 (833)
T Consensus       284 va~i~l~~~~~v~ill~~~~~~g~tLTLpGIAGiILtIGmaVDaNVlI~eei~~e~--~~~~~~ai~~g~~~Af~tI~da  361 (414)
T PRK08343        284 VLPMVFTSLSEVIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVLAEG--KVPSRKVFLKRIKRAFFIIFAA  361 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHEEEECCCEEEEHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999856423299999988741022216288758877523--6544578999999999999998


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             556899988876145544311478877888998777751139999998613
Q gi|254780925|r  467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY  517 (833)
Q Consensus       467 ~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (833)
T Consensus       362 niTTliaa~iL~~~GtG~VkGFA~TL~iGIl~s~f~Trp~~~~i~r~l~~~  412 (414)
T PRK08343        362 AATTIAAMSPLAVMGLGTLKGFAITTILGVLIGVLITRPAYGDIIKYLLGK  412 (414)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHCC
T ss_conf             799999999999983778039999999988942446189999999998457