HHsearch alignment for GI: 254780925 and conserved domain: TIGR00833
>TIGR00833 actII Transport protein; InterPro: IPR004707 Characterised members of the Resistance-Nodulation-Cell Division (RND) superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This group includes the Streptomyces coelicolor ActII3 protein, which may play a role in drug resistance, and the Mycobacterium tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.; GO: 0016021 integral to membrane.
Probab=99.83 E-value=4.3e-18 Score=124.04 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999973032035666677777788999999998766------5578-99999986533578999999987
Q gi|254780925|r 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL------TLPS-IAGIVLGIGLAVDSNILVNERIR 439 (833)
Q Consensus 367 ~~~~~lvvvvv~l~l~~~r~~li~~iaIpisii~tl~~l~~~G~tL------n~~s-l~gl~~~~g~~vd~~i~~~e~~~ 439 (833)
T Consensus 831 ~~~l~~vf~I~~~llRa~vA~~~~ig~v~lS~~~alG~~~L~~~hilgf~~lh~~~l~~~f~~Lva~G~DYN~ll~~Ri~ 910 (992)
T TIGR00833 831 IITLAIVFLILALLLRALVAPIVLIGSVALSYLAALGLSVLVFQHILGFAELHWSVLALVFVLLVAVGVDYNLLLVSRIK 910 (992)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999877899999999999999999889999877752320125675678888887877667799999999
Q ss_pred HHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
Q ss_conf 631-02555799999999999999997655689998887614554431147887788899877775113-9999998613
Q gi|254780925|r 440 EEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV-RAMMIFIIRY 517 (833)
Q Consensus 440 ~~~-~~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 517 (833)
T Consensus 911 eE~d~~G~--r~g~Ir~l~stG~ViT~AGLvfA~tm~aL~~~~l~~iaq~G~t~g~G~llDtl~vR~v~~paL~~~~GR~ 988 (992)
T TIGR00833 911 EESDPAGL--RTGVIRALGSTGGVITAAGLVFAGTMFALVSAQLTAIAQVGFTVGVGILLDTLIVRSVTVPALTLLLGRW 988 (992)
T ss_pred HHHHHCCC--CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86631478--5550102246684002468999999999998778777762159889999999999999999999985141
Q ss_pred CCCC
Q ss_conf 6677
Q gi|254780925|r 518 KKMK 521 (833)
Q Consensus 518 ~~~~ 521 (833)
T Consensus 989 ~WWP 992 (992)
T TIGR00833 989 LWWP 992 (992)
T ss_pred CCCC
T ss_conf 0589