HHsearch alignment for GI: 254780925 and conserved domain: TIGR00917
>TIGR00917 2A060601 Niemann-Pick C type protein family; InterPro: IPR004765 The Niemann-Pick C type protein is an integral membrane protein, which indicates that it is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterised by the lysosomal accumulation of unestrified cholesterol.; GO: 0030301 cholesterol transport, 0016021 integral to membrane.
Probab=98.55 E-value=4.7e-07 Score=58.19 Aligned_cols=125 Identities=21% Similarity=0.321 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----------------HHH--H--HHHHHHHHHC------
Q ss_conf 777788999999998766557899---999986533578-----------------999--9--9998763102------
Q gi|254780925|r 395 FLNVILTLALLSLLGATLTLPSIA---GIVLGIGLAVDS-----------------NIL--V--NERIREENRK------ 444 (833)
Q Consensus 395 pisii~tl~~l~~~G~tLn~~sl~---gl~~~~g~~vd~-----------------~i~--~--~e~~~~~~~~------ 444 (833)
T Consensus 780 ~~Sv~~SvGvfS~~gLk~TLIi~EVIPFLVLA--vgVdnsniaCnfnmladvvatffIfiLv~~y~~l~~~~~~~Gvdnm 857 (1471)
T TIGR00917 780 LASVVISVGVFSYIGLKATLIIVEVIPFLVLA--VGVDNSNIACNFNMLADVVATFFIFILVQTYQRLERLRREVGVDNM 857 (1471)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEECCEEEE--EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 99999876765023576306888740432452--1220024565477899999999999999976553010357773411
Q ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-------------------
Q ss_conf ------------5557999999999999999976556899988876145544311478877-------------------
Q gi|254780925|r 445 ------------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG------------------- 493 (833)
Q Consensus 445 ------------~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~~~~~~~~f~~~~~------------------- 493 (833)
T Consensus 858 Cilvha~~R~~~~~tle~~~~r~L~~VGPSi~LaSLsE~lAF~lGaL~~MPAV~~FSlyA~yslnafiiyfltsiCimla 937 (1471)
T TIGR00917 858 CILVHAVKRAEILLTLEQQLGRVLGKVGPSILLASLSESLAFFLGALSKMPAVRAFSLYAGYSLNAFIIYFLTSICIMLA 937 (1471)
T ss_pred EEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44321010132137806889988523436789999999999987322017378999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -8889987777511399999986136677
Q gi|254780925|r 494 -LSILISMFTAISIVRAMMIFIIRYKKMK 521 (833)
Q Consensus 494 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (833)
T Consensus 938 aLAv~~DFLLQitaFvaLl~LD~kR~e~~ 966 (1471)
T TIGR00917 938 ALAVFIDFLLQITAFVALLVLDIKRAEEN 966 (1471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999998889999999987041202127