HHsearch alignment for GI: 254780925 and conserved domain: TIGR00918
>TIGR00918 2A060602 transmembrane receptor Patched; InterPro: IPR004766 Patched (Ptc) is a Drosophila melanogaster (Fruit fly) membrane protein that plays a critical role in patterning embryonic and imaginal tissues. It constitutively inactivates the transcription of genes wingless, decapentaplegic, and patched itself. The secreted protein, hedgehog (Hh) induces transcription of genes by opposing the patched signaling pathway . In humans, mutations affecting patched (Ptc) or smoothened (Smo) homologues that trigger ligand-independent activity of the Hedgehog (Hh) signalling pathway are associated with tumours such as basal cell carcinoma (BCC) and medulloblastoma . Patched is associated with a complex belonging to the hedgehog pathway. Members of the complex include cubitus interruptus, sex-lethal, patched and smoothened. The complex is present at the plasma membrane and the association of patched changes depending on the activation state of the pathway . ; GO: 0008158 hedgehog receptor activity, 0016021 integral to membrane.
Probab=99.19 E-value=7.9e-09 Score=68.76 Aligned_cols=204 Identities=11% Similarity=0.131 Sum_probs=142.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 443210135788765444321100001223333--320110011024578888889999999999997303203566667
Q gi|254780925|r 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393 (833)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~li~~ia 393 (833)
T Consensus 991 ~~T~~fveaIe~~Ra~c~~y~~~G~~~YPsG~PFlFWEQY--~gLR~~lll~~~~vL~ctflvcallLLnpWtAglivlv 1068 (1215)
T TIGR00918 991 RETSDFVEAIEKVRAICNNYEQAGLPSYPSGYPFLFWEQY--LGLRHSLLLSISVVLLCTFLVCALLLLNPWTAGLIVLV 1068 (1215)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3556899999999999887641886647798860268889--99999999999999999999999986234689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77777889999999987665578999999865335789999999876310255579999999999999999765568999
Q gi|254780925|r 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 (833)
Q Consensus 394 Ipisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~ 473 (833)
T Consensus 1069 l~~mtvelFG~MgllGIKLSAiPvVILiaSVGigveFtVhiaLgFlT~~--G~rn~Ra-~laleh~faPv~dGa~stllg 1145 (1215)
T TIGR00918 1069 LALMTVELFGIMGLLGIKLSAIPVVILIASVGIGVEFTVHIALGFLTAI--GDRNRRA-VLALEHMFAPVLDGALSTLLG 1145 (1215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999975788864778777788767661320578899999998601--5635899-999874311466789999999
Q ss_pred HHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88876145544-3114788778889987777511399999986136677556
Q gi|254780925|r 474 TVVLFFFGGGA-VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 (833)
Q Consensus 474 ~~~l~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (833)
T Consensus 1146 vlMLagS~FdFivRyFfa~L~vlt~lG~lngLvllPvLLS~~GP~pEv~p~~ 1197 (1215)
T TIGR00918 1146 VLMLAGSEFDFIVRYFFAVLAVLTVLGVLNGLVLLPVLLSILGPEPEVVPLE 1197 (1215)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf 9984279862347889999999999999878999999984108850030256