HHsearch alignment for GI: 254780925 and conserved domain: TIGR03480
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=100.00 E-value=0 Score=339.67 Aligned_cols=438 Identities=17% Similarity=0.225 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88999999999999730320356666777777889999999987665578999999865335789999999876310255
Q gi|254780925|r 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 (833)
Q Consensus 367 ~~~~~lvvvvv~l~l~~~r~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~ 446 (833)
T Consensus 276 ~~s~~~i~~ll~~~fRs~~~~~l~l~~~~~gv~~tlg~~~l~~g~l~~~t~~~~~~liGigVdy~Ih~~~ry~ee~~~g~ 355 (862)
T TIGR03480 276 LLSFVLVLVLLWLALRSPRLVFAVLVTLIVGLILTAAFATLAVGHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGG 355 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999999999999999636621289999999999866789999999999997599
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 57999999999999999976556899988876145544311478877888998777751139999998613667755643
Q gi|254780925|r 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 (833)
Q Consensus 447 ~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (833)
T Consensus 356 ~~~~A~~~a~~~~g~~illa~lTT~~gFlsL~~s~~~~l~~~Gi~aaiGv~~a~l~~l~llPall~l~~~~~~~~~~~~~ 435 (862)
T TIGR03480 356 NHREALSVAARRMGAALLLAALATAAGFFAFLPTDYKGVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRRRKPPGYA 435 (862)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 87999999999876899999999999999986257778999999999999999999999999999971664323566304
Q ss_pred CCCCCCCCCCCCEEECCCCCEEEEECCHHHCCCCCCCCCCCCCCCC--------------------CCCCCCEEEEEECC
Q ss_conf 3322101012200100222102211001100212221122223455--------------------55566037999717
Q gi|254780925|r 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG--------------------IDFKGGIQLGVLAN 586 (833)
Q Consensus 527 ~~~~~~~~~~~~~i~f~~~~~~~~~~s~~li~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 586 (833)
T Consensus 436 ~~~~l-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 508 (862)
T TIGR03480 436 TLAPL-------DAFLRRHRRPVLGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSPYSAEVLAP 508 (862)
T ss_pred HHHHH-------HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 68899-------99998360699999999999999977641004787764275416889999998366887723667358
Q ss_pred CCCCHHHHHHHHHHHHH-----------------------------CCCC-CCCC---CCC-------------------
Q ss_conf 75788999885555420-----------------------------0233-3235---687-------------------
Q gi|254780925|r 587 RPVDLSVVRSNLESLQI-----------------------------GDIS-FQNF---DGE------------------- 614 (833)
Q Consensus 587 ~~~~~~~~~~~~~~~~~-----------------------------~~~~-~~~~---~~~------------------- 614 (833)
T Consensus 509 ~~~~~~~~~~~l~~l~~v~~~~s~~~~~p~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 588 (862)
T TIGR03480 509 SAPEARALTERLEALPEVDQVVTLPDFVPDDQEAKLALIADLALVLGPTLNPGEADPAPSAEEVAAALRRLAARLRAAAA 588 (862)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77889999999860644233100655176534779999999998725533422124577638899999999999998750
Q ss_pred --CCEEE-----------EEEC-CCCCCCHHH-----------HHHHHHHHHHC------------------CCC-----
Q ss_conf --64024-----------4311-555420235-----------67887775410------------------124-----
Q gi|254780925|r 615 --KNFLV-----------RLQY-QPGDSVAQT-----------RVLEMVKKKIT------------------EIV----- 646 (833)
Q Consensus 615 --~~~~~-----------~~~~-~~~~~~~~~-----------~~~~~~~~~~~------------------~~~----- 646 (833)
T Consensus 589 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~g~~~~ 668 (862)
T TIGR03480 589 KSQDPDAAAAGRLAASLDRLLAKAPAQAATLRALQGALLAGLPGELDRLRDSLQAEPVTLEDLPPDLRRRWVAKDGRARL 668 (862)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHCCCCCEEE
T ss_conf 45674302578999999988515510478999988875104055799999874345466422438899876075764688
Q ss_pred -----------------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf -----------------------4433332111210135789984579999999999999999999-9989999999999
Q gi|254780925|r 647 -----------------------PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 (833)
Q Consensus 647 -----------------------~~~~~~~~~~v~~~~~~~~~~~~~~a~~~al~~I~i~i~~rf~-~~~~i~aiial~~ 702 (833)
T Consensus 669 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~~i~~~~~~s~~la~~~i~lll~l~fRs~~~~l~~liP~~l 748 (862)
T TIGR03480 669 EVFPKEDLNDNEALRRFVRAVRKVAPDATGAPVSILESGDTVVGAFLQAFIYALVAITVLLLLTLRRVRDVLLVLAPLLL 748 (862)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87505775647999999999850274544499999999999999999999999999999999999569999999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999757145699999999997533574788721035555057799989999999987779999999999999
Q gi|254780925|r 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 (833)
Q Consensus 703 ~v~~~~g~~~~~g~~~~~~~i~~~l~iiG~svd~~I~~~~RirE~~~~~~~~~~~~~~v~~~~~~~~~~~i~ts~tt~~~ 782 (833)
T Consensus 749 ~~~~~~g~m~l~gi~ln~~t~~v~~l~iGIgVDy~Ih~~~r~r~~~~~---~~~~~-------~~tg~Ai~~saltt~~G 818 (862)
T TIGR03480 749 AGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRNGVDS---GNLLQ-------SSTARAVFFSALTTATA 818 (862)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHH-------HHHHHHHHHHHHHHHHH
T ss_conf 999999999997899749999999999887752099999999965313---66155-------27999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997053435663899999999999999999999999
Q gi|254780925|r 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 (833)
Q Consensus 783 ~~~l~~~~~~~~~~f~~~~~~gvi~~~~~sifi~~~~~~ 821 (833)
T Consensus 819 F~~L~~S~~~~~~~~G~~~~igi~~all~~l~~lPaLL~ 857 (862)
T TIGR03480 819 FGSLAVSSHPGTASMGILLSLGLGLTLLCTLIFLPALLG 857 (862)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999758899999999999999999999999888548