HHsearch alignment for GI: 254780925 and conserved domain: TIGR03480
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.94 E-value=1.2e-24 Score=163.11 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88899999999999973032035666677777788999999998766557899999986533578999999987631025
Q gi|254780925|r 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 (833)
Q Consensus 366 ~~~~~~lvvvvv~l~l~~~r~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~ 445 (833)
T Consensus 718 ~~la~~~i~lll~l~fRs~~~~l~~liP~~l~~~~~~g~m~l~gi~ln~~t~~v~~l~iGIgVDy~Ih~~~r~r~~~~~~ 797 (862)
T TIGR03480 718 FIYALVAITVLLLLTLRRVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRNGVDSG 797 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999995699999999999999999999999978997499999999998877520999999999653136
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55799999999999999997655689998887614554431147887788899877775113999999
Q gi|254780925|r 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 (833)
Q Consensus 446 ~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (833)
T Consensus 798 ~~~~~-------~tg~Ai~~saltt~~GF~~L~~S~~~~~~~~G~~~~igi~~all~~l~~lPaLL~~ 858 (862)
T TIGR03480 798 NLLQS-------STARAVFFSALTTATAFGSLAVSSHPGTASMGILLSLGLGLTLLCTLIFLPALLGK 858 (862)
T ss_pred CHHHH-------HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 61552-------79999999999999999999997588999999999999999999999998885489