HHsearch alignment for GI: 254780925 and conserved domain: pfam00873

>pfam00873 ACR_tran AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Probab=100.00  E-value=0  Score=626.72  Aligned_cols=787  Identities=14%  Similarity=0.082  Sum_probs=559.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf             97517999999999999999996310243404457420476742211012785499998433675189887899999998
Q gi|254780925|r    1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF   80 (833)
Q Consensus         1 mr~~~~~~il~~~i~l~g~~~~lp~~~~~~~~~~~P~~~p~~~i~lGLDL~GG~~v~~~~~~~~~~~~~v~~~~e~l~~~   80 (833)
T Consensus         6 ~~~p~~~~~l~~~i~l~G~~~-----~~~lp~~~~P~~~~~~i-~--------V~~~~pGasp~~vE~~vt~piE~~l~~   71 (1021)
T pfam00873         6 IDRPIFALVLAIAILLAGILS-----FFSLPVDQYPEIAPPTV-Q--------VSTSYPGASPETVEDTVTQPIEQAMNG   71 (1021)
T ss_pred             HHCHHHHHHHHHHHHHHHHHH-----HHHCCHHHCCCCCCCEE-E--------EEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf             729899999999999999999-----98396632899998479-9--------999869999999999989999999808


Q ss_pred             HHHCCCEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf             62059126589831997999966976789999999999998744176544577314236775116875134566512689
Q gi|254780925|r   81 LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI  160 (833)
Q Consensus        81 v~~~~~~~sts~~~~~~I~V~f~~~~d~~~a~~~v~~~v~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (833)
T Consensus        72 v~gv~~i~S~s~~g~s~i~v~f~~~~d~~~~~~~v~~~v~~~~~~lP~~~~~p~i~~~~~~~~~v~~~~l~~~~~~~~~~  151 (1021)
T pfam00873        72 LDGLKYMSSQSSYGLSSITLTFEDGTDIDIARVQVQNRLQLATPLLPEGVQRPGISVIKTSLGPIMVLAVTSPDGSYTQT  151 (1021)
T ss_pred             CCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCHH
T ss_conf             99807999999589199999997899989999999999999886099766787788624887527999999389997999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             87788876311231034654210125730123334689889854126989998887400123444555653346666510
Q gi|254780925|r  161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ  240 (833)
Q Consensus       161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (833)
T Consensus       152 ~l~~~~~~~l~~~L~~v~gV~~V~~~G~~~~~i~I~~d~~~L~~~gls~~~v~~~i~~~n~~~~~G~~~~~~~~~~i~~~  231 (1021)
T pfam00873       152 DLRDYADTNIKDQLSRIPGVGDVQLFGGSEYAMRIWLDPQKLNSYGLTLTDVVSALKEQNVQVGAGQLEGQGLNALIRAQ  231 (1021)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEC
T ss_conf             99999999999998479790699975897069999978999988698999999999850022457168408679999807


Q ss_pred             EECCCCCEEECCEECCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             00267501202111011112233332210000123322101100100000123221100000013320001233344321
Q gi|254780925|r  241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS  320 (833)
Q Consensus       241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (833)
T Consensus       232 ~~~~~~~di~~-------------------i~i~~~~g-~~i~L~DvA~V~~~~~~~~~~~~~nG~~av~l~V~~~~~an  291 (1021)
T pfam00873       232 GRLQSAEDFEK-------------------IIVKNQDG-SPVRLRDVATVELGAELYRGFATFNGKPAVGLGVQKLPGAN  291 (1021)
T ss_pred             CCCCCHHHHHH-------------------HHCCCCCC-CEEEECHHCEEEECCCCCCEEEEECCCCCEEEEEEECCCCC
T ss_conf             75089999987-------------------50438999-18985100022204555420267717652157664058999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             01357887654443211000012233333201100110245788888899999999999973032035666677777788
Q gi|254780925|r  321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL  400 (833)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~li~~iaIpisii~  400 (833)
T Consensus       292 ~i~v~~~v~~~l~~~~~~lp~~~~~~~~~d~s~~i~~~i~~l~~~~~~g~~lv~~vl~lfL~~~r~aliv~~~IP~si~~  371 (1021)
T pfam00873       292 AIETADAVRAKLAELKPTFPQGVEIVVPYDTTPFVRASIEEVVKTLLEAIVLVILVMFLFLQNFRATLIPAIAVPLSLLG  371 (1021)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHH
T ss_conf             99999999999998886488886489995245889999999999999999999999999850230024776513378999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999987665578999999865335789999999876310-255579999999999999999765568999888761
Q gi|254780925|r  401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF  479 (833)
Q Consensus       401 tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~-~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~  479 (833)
T Consensus       372 ~~~~m~~~g~slN~isL~glilalGmlVDdaIVv~Eni~r~l~~~G~~~~~aa~~g~~ev~~pv~~stlTti~aFlPl~f  451 (1021)
T pfam00873       372 TFAVMKAFGFSINTLTLGGLVLAIGLVVDDAIVVVENIERGLAEEGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPIAF  451 (1021)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHEEEEEECCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999983705437789877742689970767887728889987699989999997666646888899999999988886


Q ss_pred             CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCE----EECCCCCEEEE
Q ss_conf             455---443114788778889987777511399999986136677556433--322101012200----10022210221
Q gi|254780925|r  480 FGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP--LSRFFLIPDCIA----IQFMRARFWGV  550 (833)
Q Consensus       480 ~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----i~f~~~~~~~~  550 (833)
T Consensus       452 ~~G~~G~~~~~i~~tv~~aL~~SL~vAl~ivP~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~L~~~l~~r~~~~  531 (1021)
T pfam00873       452 LGGVTGRIFRQFAITIVLAILLSVLVALTLTPALCATLLKARREPKHGGFFRWFNRMFDRLTRGYAKLLGKVLRHRGVVL  531 (1021)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             26753113343488999999999999999999999985578876432115565568999999999999999995459999


Q ss_pred             ECCHHHCCCCCCCCCCCCCCC-CCCCCCCEEEEEECCCCCCHHHH-----------------------------------
Q ss_conf             100110021222112222345-55556603799971775788999-----------------------------------
Q gi|254780925|r  551 GISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVV-----------------------------------  594 (833)
Q Consensus       551 ~~s~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  594 (833)
T Consensus       532 ~~~~~l~~~s~~l~~~l~~~ffP~~d~~~~~v~v~~p~Gtsle~t~~~~~~ie~~l~~~~~v~~v~~~iG~~~~~~~~~~  611 (1021)
T pfam00873       532 LVALLLVVGSLWLFVRIPKEFLPEEDEGVFVTSAQLPPGASLDQTQRVLKQVEKILKEKPEVESVFAVTGFAFAGDNNGP  611 (1021)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
T ss_conf             99999999999998547877789778784599997799999999999999999998549993699999655677888886


Q ss_pred             -----------------------------HHHHHHHHHCCC---------------------------------------
Q ss_conf             -----------------------------885555420023---------------------------------------
Q gi|254780925|r  595 -----------------------------RSNLESLQIGDI---------------------------------------  606 (833)
Q Consensus       595 -----------------------------~~~~~~~~~~~~---------------------------------------  606 (833)
T Consensus       612 ~~~~~~v~L~~~~~r~~~~~~~~~i~~~~r~~l~~~pg~~~~~~~~~~~~~~~~~~g~~~~i~i~l~G~d~~~L~~~a~~  691 (1021)
T pfam00873       612 NSGDVFITLKPWKERPGPEQTVEAIIERLRKALAKIPGANVFLFQPPAIRELGTASGFRSDLQVKIFGDGLDALDEARNQ  691 (1021)
T ss_pred             CEEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf             40699999736898588545799999999998730788189985574101457788865279999479999999999999


Q ss_pred             --------------------------------------------------------CCCCCCCCCCEEEEEE--------
Q ss_conf             --------------------------------------------------------3323568764024431--------
Q gi|254780925|r  607 --------------------------------------------------------SFQNFDGEKNFLVRLQ--------  622 (833)
Q Consensus       607 --------------------------------------------------------~~~~~~~~~~~~~~~~--------  622 (833)
T Consensus       692 v~~~L~~~~gv~~v~~~~~~~~~el~i~vdr~~a~~~Gls~~~Va~~l~~a~~G~~v~~~~~~~~~i~I~vr~~~~~~~~  771 (1021)
T pfam00873       692 ILAALAQLPGLADVRPNGQEDQPQLQVNIDREKAARLGVSIADINQTVSTALGGSYVNDFIERGRVYDVVVQLPEDFRSS  771 (1021)
T ss_pred             HHHHHHCCCCEEEEECCCCCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHCCCCCCCEECCCCEEEEEEEECCHHHHHH
T ss_conf             99998359981787546567981899996467798679989999999998538875540114881888999828666311


Q ss_pred             ----------------------------------------------CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             ----------------------------------------------1555420235678877754101244433332111
Q gi|254780925|r  623 ----------------------------------------------YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI  656 (833)
Q Consensus       623 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (833)
T Consensus       772 ~~~L~~l~I~s~~G~~VpLs~la~i~~~~~~~~I~R~dg~r~i~V~a~i~~~~~~~~~~~~v~~~~~~~~l-P~g~~~~~  850 (1021)
T pfam00873       772 PEDIGQLYVRNPLGKMVPLSAFATIEWGYGPPSIERYNGFRSIVISGNVAPGDSLGDAMEAIAQIAKQVKL-PPGYGYTW  850 (1021)
T ss_pred             HHHHHCEEEECCCCCEEEHHHEEEEEEECCCHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-CCCEEEEE
T ss_conf             23143227643689588854738999814807873016827999999957988789999999999861689-99728996


Q ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             21-0135789984579999999999999999999-998999999999999999999999757145699999999997533
Q gi|254780925|r  657 VG-PKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV  734 (833)
Q Consensus       657 v~-~~~~~~~~~~~~~a~~~al~~I~i~i~~rf~-~~~~i~aiial~~~v~~~~g~~~~~g~~~~~~~i~~~l~iiG~sv  734 (833)
T Consensus       851 ~Ge~~~~~e~~~~l~~~~~~ai~lIyliL~~~F~S~~~pliIl~~IP~a~iG~~lgl~~~g~~~~~~s~iG~i~L~GIvV  930 (1021)
T pfam00873       851 TGQSYQEQLAGNQLPILIALALLLVFLVLAALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLITLIGLAV  930 (1021)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             62899999999999999999999999999999807999999999999999999999999878813999999999999999


Q ss_pred             CCEEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57478872103555505779998999999998777999999999999999999705---343566389999999999999
Q gi|254780925|r  735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASS  811 (833)
Q Consensus       735 d~~I~~~~RirE~~~~~~~~~~~~~~v~~~~~~~~~~~i~ts~tt~~~~~~l~~~~---~~~~~~f~~~~~~gvi~~~~~  811 (833)
T Consensus       931 nn~Ivlvd~~n~~~~~--~g~~~~~Aii~a~~~RlRPIlmTtlTTi~GllPla~~~~~g~~~~~pmA~~ii~GL~~st~l 1008 (1021)
T pfam00873       931 KNAILMVEFANELREQ--EGKSLVEAILEAAKLRLRPILMTALAAILGVLPLAISTGAGSELQQPLGIVVFGGLITSTVL 1008 (1021)
T ss_pred             HCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHH
T ss_conf             4730679999999997--69999999999999978899999999999999998754895786506599999999999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999986
Q gi|254780925|r  812 SIFIAAPILLFIY  824 (833)
Q Consensus       812 sifi~~~~~~~~~  824 (833)
T Consensus      1009 tL~~vP~~y~lf~ 1021 (1021)
T pfam00873      1009 TLLVVPVFYVLFH 1021 (1021)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999859