HHsearch alignment for GI: 254780925 and conserved domain: pfam00873
>pfam00873 ACR_tran AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Probab=100.00 E-value=2.3e-31 Score=203.21 Aligned_cols=466 Identities=12% Similarity=0.015 Sum_probs=246.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75179999999999999999963102434044574204767422110127854999984336751898878999999986
Q gi|254780925|r 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81 (833)
Q Consensus 2 r~~~~~~il~~~i~l~g~~~~lp~~~~~~~~~~~P~~~p~~~i~lGLDL~GG~~v~~~~~~~~~~~~~v~~~~e~l~~~v 81 (833)
T Consensus 525 ~~r~~~~~~~~~l~~~s~~l-----~~~l~~~ffP~~d~~~-----------~~v~v~~-p~Gtsle~t~~~~~~ie~~l 587 (1021)
T pfam00873 525 RHRGVVLLVALLLVVGSLWL-----FVRIPKEFLPEEDEGV-----------FVTSAQL-PPGASLDQTQRVLKQVEKIL 587 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHCCCCCCCCCCCCC-----------EEEEEEC-CCCCCHHHHHHHHHHHHHHH
T ss_conf 54599999999999999999-----8547877789778784-----------5999977-99999999999999999998
Q ss_pred HHCCCEEEEEEE------------ECCEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHCCCCCC---CCCEECC-
Q ss_conf 205912658983------------1997999966976-------7899999999999987441765445---7731423-
Q gi|254780925|r 82 KKEGIGVFSMRQ------------IQNKITLSFADSR-------FKENIADKVTLFLQGVNSKLNVDPK---KNLLVTT- 138 (833)
Q Consensus 82 ~~~~~~~sts~~------------~~~~I~V~f~~~~-------d~~~a~~~v~~~v~~~~~~lp~~~~---~~~~~~~- 138 (833)
T Consensus 588 ~~~~~v~~v~~~iG~~~~~~~~~~~~~~~~v~L~~~~~r~~~~~~~~~i~~~~r~~l~~----~pg~~~~~~~~~~~~~~ 663 (1021)
T pfam00873 588 KEKPEVESVFAVTGFAFAGDNNGPNSGDVFITLKPWKERPGPEQTVEAIIERLRKALAK----IPGANVFLFQPPAIREL 663 (1021)
T ss_pred HCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCC
T ss_conf 54999369999965567788888640699999736898588545799999999998730----78818998557410145
Q ss_pred --CC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Q ss_conf --67-751168751345665126898778887631123103465421012-57301233346898898541269899988
Q gi|254780925|r 139 --TE-KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 (833)
Q Consensus 139 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (833)
T Consensus 664 ~~~~g~~~~i~i~-l~G~d--~~~L---~~~a~~v~~~L~~~~gv~~v~~~~~~~~~el~i~vdr~~a~~~Gls~~~Va~ 737 (1021)
T pfam00873 664 GTASGFRSDLQVK-IFGDG--LDAL---DEARNQILAALAQLPGLADVRPNGQEDQPQLQVNIDREKAARLGVSIADINQ 737 (1021)
T ss_pred CCCCCCCEEEEEE-ECCCC--HHHH---HHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECHHHHHHCCCCHHHHHH
T ss_conf 7788865279999-47999--9999---9999999999835998178754656798189999646779867998999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCEECCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCHHHCCCCC
Q ss_conf 87400123444555653346666510002675012021110111122333322100001233221011001000001232
Q gi|254780925|r 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 (833)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (833)
T Consensus 738 ~l~~a~~G~~v~~~~~~~~~i~----------I~vr~~~~~~-----~~~~~L~~l~I~s~~G~~VpLs~la~i~~~~~~ 802 (1021)
T pfam00873 738 TVSTALGGSYVNDFIERGRVYD----------VVVQLPEDFR-----SSPEDIGQLYVRNPLGKMVPLSAFATIEWGYGP 802 (1021)
T ss_pred HHHHHCCCCCCCEECCCCEEEE----------EEEECCHHHH-----HHHHHHHCEEEECCCCCEEEHHHEEEEEEECCC
T ss_conf 9998538875540114881888----------9998286663-----112314322764368958885473899981480
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 21100000013320001233344321013578876544432110000122333332011001102457888888999999
Q gi|254780925|r 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 (833)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvv 374 (833)
T Consensus 803 ~~I~R~dg~r~i~V~a~i~~~--~-~~~~~~~~v~---~~~~~~~lP~g~~~~~~Ge~~~~~e~~~~l~~~~~~ai~lIy 876 (1021)
T pfam00873 803 PSIERYNGFRSIVISGNVAPG--D-SLGDAMEAIA---QIAKQVKLPPGYGYTWTGQSYQEQLAGNQLPILIALALLLVF 876 (1021)
T ss_pred HHHHHCCCCEEEEEEEEECCC--C-CHHHHHHHHH---HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 787301682799999995798--8-7899999999---998616899972899662899999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHH
Q ss_conf 99999973032035666677777788999999998766557899999986533578999999987631-02555799999
Q gi|254780925|r 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLD 453 (833)
Q Consensus 375 vvv~l~l~~~r~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~-~~~~~~~~a~~ 453 (833)
T Consensus 877 liL~~~F~S~~~pliIl~~IP~a~iG~~lgl~~~g~~~~~~s~iG~i~L~GIvVnn~Ivlvd~~n~~~~~~g~~~~~Aii 956 (1021)
T pfam00873 877 LVLAALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLITLIGLAVKNAILMVEFANELREQEGKSLVEAIL 956 (1021)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999980799999999999999999999999987881399999999999999947306799999999976999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999976556899988876145---5443114788778889987777511399999986
Q gi|254780925|r 454 MGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 (833)
Q Consensus 454 ~~~~~~~~~i~~~~~t~~~~~~~l~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (833)
T Consensus 957 ~a~~~RlRPIlmTtlTTi~GllPla~~~~~g~~~~~pmA~~ii~GL~~st~ltL~~vP~~y~lf~ 1021 (1021)
T pfam00873 957 EAAKLRLRPILMTALAAILGVLPLAISTGAGSELQQPLGIVVFGGLITSTVLTLLVVPVFYVLFH 1021 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999788999999999999999987548957865065999999999999999999999999859