HHsearch alignment for GI: 254780925 and conserved domain: pfam02460
>pfam02460 Patched Patched family. The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals.
Probab=100.00 E-value=8.8e-28 Score=181.83 Aligned_cols=433 Identities=13% Similarity=0.114 Sum_probs=278.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 03566667777778899999999876655789999998653357899999998763102555799999999999999997
Q gi|254780925|r 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 (833)
Q Consensus 386 ~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~i~~ 465 (833)
T Consensus 252 lgl~Gvl~~~lav~~s~Gl~~~~Gv~f~~i~~v~PFLvLgIGVDd~Fi~v~a~~r~~~-~~~~~eR~~~~l~~agpSIti 330 (801)
T pfam02460 252 LAILGCLTPLMATVSAFGLLFWFGFPFNSIVCVTPFLVLAIGVDDMFLMVHAWQRTTK-TLSVKKRMGETLSEAGPSITI 330 (801)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999781088899999999999734069899999853676-799899999999996279999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---------------CC
Q ss_conf 655689998887614554431147887788899877775113999999861366775564333---------------22
Q gi|254780925|r 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL---------------SR 530 (833)
Q Consensus 466 ~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 530 (833)
T Consensus 331 TSlT~~~AF~iGa~s~~PAVr~Fciyaa~aV~f~fllqiT~F~A~l~ld~rRe~~~r~~~~~~~~~~~~~~~~~~~~~~~ 410 (801)
T pfam02460 331 TSLTNVLSFGIGTYTPTPAIQLFCLYTAVAIFFDFIYQITFFAAVMAICAKREMKGRHCLFVRIAKEESPIQRIDREGSR 410 (801)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCCCCCC
T ss_conf 99999999998826774899999999999999999999999999999999999859874675147565520000354567
Q ss_pred -----------CCCCCCCCEEECCCCCEEEEECCHHH---CCCCCC--CCCCCCCCC------------------CCCCC
Q ss_conf -----------10101220010022210221100110---021222--112222345------------------55556
Q gi|254780925|r 531 -----------FFLIPDCIAIQFMRARFWGVGISILF---SICSIC--LLFTHGLNY------------------GIDFK 576 (833)
Q Consensus 531 -----------~~~~~~~~~i~f~~~~~~~~~~s~~l---i~~~~~--~~~~~~~~~------------------~~~~~ 576 (833)
T Consensus 411 ~~~~~~~~~~~~~~ff~~~yapfL~~~~vkv~V~~if~~~l~~si~g~~~l~~gLd~~~l~p~dSyl~~y~~~~~~yf~~ 490 (801)
T pfam02460 411 PPDKSHNAEQPTSRFFLSIYCPFLLNPKVRVCVLLVFVVYLAIAIYGCVNIKIGLDPDKLVVEDSPLVEYLSLREKHFWP 490 (801)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 78743342047999999986889807562520247999999999974610067889887275789479999999985013
Q ss_pred CCEEE--EEECCCCCCHHHHHHHHHHHHHCCCCCCCCC------------------------------------------
Q ss_conf 60379--9971775788999885555420023332356------------------------------------------
Q gi|254780925|r 577 GGIQL--GVLANRPVDLSVVRSNLESLQIGDISFQNFD------------------------------------------ 612 (833)
Q Consensus 577 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 612 (833)
T Consensus 491 ~g~~v~v~v~~~~d~~~~~~q~~l~~l~~~~e~~~~~~~~~~t~~Wl~dy~~~~~~~~~~~~~~~~~~~~~~l~~fl~~~ 570 (801)
T pfam02460 491 EGLQVTVFVNNPPDLTIPENRDRLNEMVDEFESTPYSMGPNSTSFWLREYENFYKTNGSELEDEEKSWSYDELKWFLKWP 570 (801)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 59808999807988798899999999999842487411786213479999999701675346778641777899987176
Q ss_pred ---------------CCCCE---EEEEECCCCCCCHHHHHHHH---HHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ---------------87640---24431155542023567887---7754101-24443333211121013578998457
Q gi|254780925|r 613 ---------------GEKNF---LVRLQYQPGDSVAQTRVLEM---VKKKITE-IVPLSTIQNTEIVGPKISRELIRKGI 670 (833)
Q Consensus 613 ---------------~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 670 (833)
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~i~~~rf~~~~~~l~~~~~~~~~~~~~R~i~~~~~~~~~~~f~~~~~f~dQy~~i~~~t~ 650 (801)
T pfam02460 571 GNSPWQGDLVWDNKSDDNTTEVTKFRFTTAGKDLSTWTDRTRLLQEWRGVADEYPEFNVTVFDEDSPFLDQILTILPDTI 650 (801)
T ss_pred CCCCCCCCEEEECCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf 67752124123036899875489999998067878889999999999999985778865757853209999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEHHHHH
Q ss_conf 99999999999999999-99998999999999999999999999757145699999999997533574788721035555
Q gi|254780925|r 671 VGVIISAIAMLIYIWIR-FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 (833)
Q Consensus 671 ~a~~~al~~I~i~i~~r-f~~~~~i~aiial~~~v~~~~g~~~~~g~~~~~~~i~~~l~iiG~svd~~I~~~~RirE~~~ 749 (833)
T Consensus 651 ~~l~~al~~~fvV~~lli~~~~~al~v~l~i~sI~v~v~G~M~lwGv~LnaVS~vnLimaIG~SVDfsaHI~~aF~~--- 727 (801)
T pfam02460 651 QSIIWTLICMAIVCFLFIPNPNCVFVITLAIASICIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHIAYHFYR--- 727 (801)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE---
T ss_conf 99999999999999999735999999999999999999999999779635899999999864210244364443024---
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 057799989999999987779999999999999999997053435663899999999999999999999999986
Q gi|254780925|r 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 (833)
Q Consensus 750 ~~~~~~~~~~~v~~~~~~~~~~~i~ts~tt~~~~~~l~~~~~~~~~~f~~~~~~gvi~~~~~sifi~~~~~~~~~ 824 (833)
T Consensus 728 --s~~~t~~~R~~~AL~~mG~pV~~GalST~lgv~vLafs~s~if~vFfk~~~lvv~~G~~HGLvfLPVlLS~fg 800 (801)
T pfam02460 728 --SRGSTPDERVADALEALGWPVFQAALSTILCVLVLLFVPSYMVVVFFKTVVLVVVIGLLHGLIFLPIILSLFD 800 (801)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf --6899978999999999879999899999999999980740799999999999999999999999999998348