HHsearch alignment for GI: 254780925 and conserved domain: pfam02460

>pfam02460 Patched Patched family. The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals.
Probab=99.74  E-value=2.8e-16  Score=113.19  Aligned_cols=157  Identities=17%  Similarity=0.190  Sum_probs=139.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02457888888999999999999730320356666777777889999999987665578999999865335789999999
Q gi|254780925|r  358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER  437 (833)
Q Consensus       358 ~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~  437 (833)
T Consensus       645 i~~~t~~~l~~al~~~fvV~~lli~~~~~al~v~l~i~sI~v~v~G~M~lwGv~LnaVS~vnLimaIG~SVDfsaHI~~a  724 (801)
T pfam02460       645 ILPDTIQSIIWTLICMAIVCFLFIPNPNCVFVITLAIASICIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHIAYH  724 (801)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999735999999999999999999999999779635899999999864210244364443


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8763102555799999999999999997655689998887614554431147887788899877775113999999861
Q gi|254780925|r  438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR  516 (833)
Q Consensus       438 ~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (833)
T Consensus       725 F~~s--~~~t~~~R~~~AL~~mG~pV~~GalST~lgv~vLafs~s~if~vFfk~~~lvv~~G~~HGLvfLPVlLS~fg~  801 (801)
T pfam02460       725 FYRS--RGSTPDERVADALEALGWPVFQAALSTILCVLVLLFVPSYMVVVFFKTVVLVVVIGLLHGLIFLPIILSLFDT  801 (801)
T ss_pred             EEEC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             0246--8999789999999998799998999999999999807407999999999999999999999999999983489