HHsearch alignment for GI: 254780925 and conserved domain: pfam02460
>pfam02460 Patched Patched family. The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals.
Probab=99.74 E-value=2.8e-16 Score=113.19 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02457888888999999999999730320356666777777889999999987665578999999865335789999999
Q gi|254780925|r 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 (833)
Q Consensus 358 ~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~ 437 (833)
T Consensus 645 i~~~t~~~l~~al~~~fvV~~lli~~~~~al~v~l~i~sI~v~v~G~M~lwGv~LnaVS~vnLimaIG~SVDfsaHI~~a 724 (801)
T pfam02460 645 ILPDTIQSIIWTLICMAIVCFLFIPNPNCVFVITLAIASICIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHIAYH 724 (801)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999735999999999999999999999999779635899999999864210244364443
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8763102555799999999999999997655689998887614554431147887788899877775113999999861
Q gi|254780925|r 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 (833)
Q Consensus 438 ~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (833)
T Consensus 725 F~~s--~~~t~~~R~~~AL~~mG~pV~~GalST~lgv~vLafs~s~if~vFfk~~~lvv~~G~~HGLvfLPVlLS~fg~ 801 (801)
T pfam02460 725 FYRS--RGSTPDERVADALEALGWPVFQAALSTILCVLVLLFVPSYMVVVFFKTVVLVVVIGLLHGLIFLPIILSLFDT 801 (801)
T ss_pred EEEC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0246--8999789999999998799998999999999999807407999999999999999999999999999983489