HHsearch alignment for GI: 254780925 and conserved domain: pfam03176
>pfam03176 MMPL MMPL family. Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Probab=99.94 E-value=1.1e-24 Score=163.45 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888889999999999997303203566667777778899999999876----65-5789999998653357899999998
Q gi|254780925|r 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT----LT-LPSIAGIVLGIGLAVDSNILVNERI 438 (833)
Q Consensus 364 ~~~~~~~~lvvvvv~l~l~~~r~~li~~iaIpisii~tl~~l~~~G~t----Ln-~~sl~gl~~~~g~~vd~~i~~~e~~ 438 (833)
T Consensus 146 ~~~~~~~~l~~~~L~l~frS~~~~~~~l~~~~~s~~~~~g~~~~l~~~~~~~i~~~~~~~~~~l~~glgiDY~i~l~~R~ 225 (332)
T pfam03176 146 LIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLVAILAHILGIGLSTFALNLLVVLLIAVGTDYALFLVSRY 225 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999810899999999999999999999999998548870888999999999998776899999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 76310255579999999999999999765568999888761455443114788778889987777511399999986136
Q gi|254780925|r 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 (833)
Q Consensus 439 ~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (833)
T Consensus 226 ree~~~g~~~~~A~~~a~~~~g~~i~~a~~t~~~~f~~l~~~~~~~~~~~G~~~a~gv~~~~l~~ltllPAll~l~G~~~ 305 (332)
T pfam03176 226 REELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPALLALLGRWG 305 (332)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998499989999999998669999999999999999997555789999999999999999999999999999913001
Q ss_pred CCCCCC
Q ss_conf 677556
Q gi|254780925|r 519 KMKSID 524 (833)
Q Consensus 519 ~~~~~~ 524 (833)
T Consensus 306 ~w~~~~ 311 (332)
T pfam03176 306 LWPPKR 311 (332)
T ss_pred CCCCCC
T ss_conf 589988