PSIBLAST alignment of GI: 254780925 and protein with PDB id: 2hqd
>gi|146387262|pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants Of The Putative Proton Relay Pathway Length = 1053
Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/231 (13%), Positives = 81/231 (35%), Gaps = 6/231 (2%)
Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
V + DI + + L +++ + K+ P
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323
Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
+ I + + ++ + I + + +++ + + L + + + T
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383
Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
A FG N + ++ IG V+ +VV + + + + ++ KS+ + G
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDAAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441
Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
V +M +PMA +GGS F+I + + ++ ++ + +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492