Query gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 49
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 01:40:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780926.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3300 consensus 31.5 37 0.00095 16.6 2.3 20 22-41 78-97 (146)
2 cd00522 Hemerythrin Hemerythri 19.1 90 0.0023 14.6 2.8 36 10-45 5-40 (113)
3 pfam01233 NMT Myristoyl-CoA:pr 19.1 33 0.00084 16.9 0.1 28 12-44 114-141 (162)
4 COG2238 RPS19A Ribosomal prote 18.1 68 0.0017 15.3 1.5 14 26-39 51-64 (147)
5 PRK00808 hypothetical protein; 13.2 1.1E+02 0.0029 14.1 1.6 27 10-36 7-33 (150)
6 pfam11210 DUF2996 Protein of u 12.7 1.1E+02 0.0027 14.2 1.3 24 24-47 93-116 (118)
7 TIGR02230 ATPase_gene1 F0F1-AT 11.9 87 0.0022 14.7 0.7 14 17-30 17-30 (100)
8 cd03556 L-fucose_isomerase L-f 11.7 1E+02 0.0027 14.3 1.0 11 26-36 533-543 (584)
9 PRK10991 fucI L-fucose isomera 10.6 1.2E+02 0.0031 14.0 1.0 11 26-36 537-547 (588)
10 pfam01090 Ribosomal_S19e Ribos 10.4 1.5E+02 0.0038 13.5 1.4 15 26-40 50-64 (140)
No 1
>KOG3300 consensus
Probab=31.52 E-value=37 Score=16.64 Aligned_cols=20 Identities=50% Similarity=0.576 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 67787689999999886864
Q gi|254780926|r 22 AQEERKIRLASMLRKNLHRR 41 (49)
Q Consensus 22 aqeerkirlasmlrknlhrr 41 (49)
-|.||.-|.-++||||+.-.
T Consensus 78 L~AErDr~~l~~lrkn~eeE 97 (146)
T KOG3300 78 LQAERDRRFLSELRKNLEEE 97 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 87887799999999868889
No 2
>cd00522 Hemerythrin Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the muscle tissue of sipunculids as well as in polycheate and oligocheate annelids. In addition to oxygen transport, Mhr proteins are involved in cadmium fixation and host anti-bacterial defense. Hr and Mhr proteins have the same "four alpha helix bundle" motif and active site structure. Hr forms oligomers, the octameric form being most prevalent, while Mhr is monomeric.
Probab=19.13 E-value=90 Score=14.63 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=27.1
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 521223343207677876899999998868643245
Q gi|254780926|r 10 NDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQA 45 (49)
Q Consensus 10 nddfacgrkkidaqeerkirlasmlrknlhrrkgqa 45 (49)
+|++..|-..||.|-.+-+.+...+.........-+
T Consensus 5 ~~~~~vGi~~ID~qHr~L~~~in~l~~a~~~~~~l~ 40 (113)
T cd00522 5 DESFRTFYEVIDDEHKTLFNGINDLSEANNRADNLK 40 (113)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 777657988899999999999999998871679999
No 3
>pfam01233 NMT Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold.
Probab=19.12 E-value=33 Score=16.91 Aligned_cols=28 Identities=43% Similarity=0.673 Sum_probs=23.0
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 122334320767787689999999886864324
Q gi|254780926|r 12 DFACGRKKIDAQEERKIRLASMLRKNLHRRKGQ 44 (49)
Q Consensus 12 dfacgrkkidaqeerkirlasmlrknlhrrkgq 44 (49)
.|-|-.||+ |.-|||.+|-|.+.||--.
T Consensus 114 NFLCVhkkl-----RskrLAPvLIkEItRRvn~ 141 (162)
T pfam01233 114 NFLCVHKKL-----RSKRLAPVLIKEITRRVNL 141 (162)
T ss_pred EEEEECHHH-----HHCCCCHHHHHHHHHHHHC
T ss_conf 998870445-----5357743899998887200
No 4
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=18.07 E-value=68 Score=15.28 Aligned_cols=14 Identities=43% Similarity=0.404 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 76899999998868
Q gi|254780926|r 26 RKIRLASMLRKNLH 39 (49)
Q Consensus 26 rkirlasmlrknlh 39 (49)
--+|.||+|||-.-
T Consensus 51 wY~RaASilRkiyi 64 (147)
T COG2238 51 WYVRAASILRKIYI 64 (147)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999985
No 5
>PRK00808 hypothetical protein; Provisional
Probab=13.21 E-value=1.1e+02 Score=14.08 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 521223343207677876899999998
Q gi|254780926|r 10 NDDFACGRKKIDAQEERKIRLASMLRK 36 (49)
Q Consensus 10 nddfacgrkkidaqeerkirlasmlrk 36 (49)
+++|.+|-..||.|-.+-+.+..-|..
T Consensus 7 ~~~~svGi~~ID~qHk~L~~liN~L~~ 33 (150)
T PRK00808 7 QSDLNTGIDVIDQQHKRIVDYINHLHD 33 (150)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 667546998899999999999999999
No 6
>pfam11210 DUF2996 Protein of unknown function (DUF2996). This family of proteins has no known function.
Probab=12.73 E-value=1.1e+02 Score=14.24 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787689999999886864324541
Q gi|254780926|r 24 EERKIRLASMLRKNLHRRKGQARL 47 (49)
Q Consensus 24 eerkirlasmlrknlhrrkgqarl 47 (49)
.||||.|.-|.-.-+.|-.||--|
T Consensus 93 DEkkitL~Llv~r~lQRLngQKwl 116 (118)
T pfam11210 93 DEKKITLKLLVSRVLQRLNGQKWL 116 (118)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 101014999999999997216303
No 7
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative; InterPro: IPR011744 This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme ..
Probab=11.93 E-value=87 Score=14.71 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=10.9
Q ss_pred HHHCCHHHHHHHHH
Q ss_conf 43207677876899
Q gi|254780926|r 17 RKKIDAQEERKIRL 30 (49)
Q Consensus 17 rkkidaqeerkirl 30 (49)
.+.+|+.++|||+-
T Consensus 17 ~~~Vg~k~~RKl~A 30 (100)
T TIGR02230 17 EKRVGDKEERKLKA 30 (100)
T ss_pred HHHCCCHHHHHHHH
T ss_conf 44038403344775
No 8
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=11.71 E-value=1e+02 Score=14.28 Aligned_cols=11 Identities=64% Similarity=0.634 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 76899999998
Q gi|254780926|r 26 RKIRLASMLRK 36 (49)
Q Consensus 26 rkirlasmlrk 36 (49)
.-|.||||||-
T Consensus 533 dliTLasmLRI 543 (584)
T cd03556 533 DLITLASMLRI 543 (584)
T ss_pred HHHHHHHHHCC
T ss_conf 79999998707
No 9
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=10.58 E-value=1.2e+02 Score=13.96 Aligned_cols=11 Identities=64% Similarity=0.597 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 76899999998
Q gi|254780926|r 26 RKIRLASMLRK 36 (49)
Q Consensus 26 rkirlasmlrk 36 (49)
.-|.||||||-
T Consensus 537 dliTLasmLRI 547 (588)
T PRK10991 537 DFITLASMLRI 547 (588)
T ss_pred HHHHHHHHHCC
T ss_conf 79999998707
No 10
>pfam01090 Ribosomal_S19e Ribosomal protein S19e.
Probab=10.36 E-value=1.5e+02 Score=13.49 Aligned_cols=15 Identities=47% Similarity=0.477 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 768999999988686
Q gi|254780926|r 26 RKIRLASMLRKNLHR 40 (49)
Q Consensus 26 rkirlasmlrknlhr 40 (49)
--||.||+|||-..+
T Consensus 50 ~Y~R~AsilRkvY~~ 64 (140)
T pfam01090 50 WYVRAASILRKLYIR 64 (140)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 799889999998724
Done!