Query gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 49
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 18:46:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780926.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ihq_A Chimeric peptide glytm 29.0 45 0.0013 15.9 2.7 25 22-48 8-32 (38)
2 >1i84_S Smooth muscle myosin h 27.2 23 0.00067 17.4 0.9 34 7-40 46-79 (80)
3 >2db2_A KIAA0890 protein; DSRM 19.0 54 0.0016 15.4 1.5 25 13-38 66-90 (119)
4 >1kqp_A NAD+ synthase;, NH(3)- 13.6 84 0.0025 14.5 1.3 39 5-43 18-63 (73)
5 >1wxi_A NH(3)-dependent NAD(+) 11.7 1E+02 0.003 14.0 1.3 39 5-43 19-64 (75)
6 >2hmq_A Hemerythrin; oxygen tr 10.8 1.3E+02 0.004 13.4 1.8 26 10-35 11-36 (113)
7 >2qiz_A Ubiquitin conjugation 10.5 1.4E+02 0.0041 13.3 2.0 20 25-44 5-24 (128)
8 >1vd7_A FMBP-1, fibroin-modula 10.1 1E+02 0.003 14.0 0.9 13 22-34 2-14 (26)
9 >1ycq_A MDM2, MDM2; anti-oncog 8.8 1.1E+02 0.0032 13.9 0.6 24 17-42 20-43 (55)
10 >2mhr_A Myohemerythrin; oxygen 8.7 1.6E+02 0.0049 12.9 3.1 36 1-36 2-37 (118)
No 1
>>1ihq_A Chimeric peptide glytm1BZIP: tropomyosin alpha chain, brain-3 and general control...; tropomyosin,EXON 1B,actin-binding; NMR {Rattus norvegicus} (A:)
Probab=28.97 E-value=45 Score=15.86 Aligned_cols=25 Identities=44% Similarity=0.547 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 677876899999998868643245416
Q gi|254780926|r 22 AQEERKIRLASMLRKNLHRRKGQARLK 48 (49)
Q Consensus 22 aqeerkirlasmlrknlhrrkgqarlk 48 (49)
.|-|+||+ +.|.||.|-..--||+|
T Consensus 8 kq~edKie--ellsknYHlENevARlk 32 (38)
T 1ihq_A 8 EAVRRKIR--SLQEQNYHLENEVARLK 32 (38)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 99999999--89987456898999999
No 2
>>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} (S:715-794)
Probab=27.21 E-value=23 Score=17.43 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7665212233432076778768999999988686
Q gi|254780926|r 7 QDDNDDFACGRKKIDAQEERKIRLASMLRKNLHR 40 (49)
Q Consensus 7 qddnddfacgrkkidaqeerkirlasmlrknlhr 40 (49)
.-++++|++|+.||=-.+.---.|.++.+..+|+
T Consensus 46 ~~~~~~~q~GkTkVFlk~~~~~~LE~~r~~~l~~ 79 (80)
T 1i84_S 46 ELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITD 79 (80)
T ss_dssp TCCTTTCCBCSSEEEECTTHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 9987665414554887543088889899999999
No 3
>>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=18.99 E-value=54 Score=15.44 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=14.7
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 22334320767787689999999886
Q gi|254780926|r 13 FACGRKKIDAQEERKIRLASMLRKNL 38 (49)
Q Consensus 13 facgrkkidaqeerkirlasmlrknl 38 (49)
-++|++||||.. .--.+|--+-|.|
T Consensus 66 e~~G~kK~eAE~-kAAa~AC~~lK~l 90 (119)
T 2db2_A 66 EGYGSKKIDAER-QAAAAACQLFKGW 90 (119)
T ss_dssp EEEESSHHHHHH-HHHHHHHHHHHHH
T ss_pred EEECCHHHHHHH-HHHHHHHHHHHHC
T ss_conf 851523467776-2458999999862
No 4
>>1kqp_A NAD+ synthase;, NH(3)-dependent NAD(+) synthetase; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} (A:1-14,A:213-271)
Probab=13.60 E-value=84 Score=14.46 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=27.4
Q ss_pred CCCCCCCCHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 877665212233432076-------778768999999988686432
Q gi|254780926|r 5 SNQDDNDDFACGRKKIDA-------QEERKIRLASMLRKNLHRRKG 43 (49)
Q Consensus 5 snqddnddfacgrkkida-------qeerkirlasmlrknlhrrkg 43 (49)
.+|.|.+++.+.-..||+ .++-.-++..+.++|-|.|..
T Consensus 18 ~GQtDE~ELG~sY~~ID~~L~~~~i~~e~~~~I~~~~~~s~HKR~~ 63 (73)
T 1kqp_A 18 PQQSDETELGISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQV 63 (73)
T ss_dssp TTCBHHHHHSSCHHHHHHHHTTCCCCHHHHHHHHHHHHHTGGGGSS
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9997977719999999999856788899999999999987752169
No 5
>>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} (A:1-15,A:216-275)
Probab=11.66 E-value=1e+02 Score=14.00 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCCCCCCCHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 877665212233432076-------778768999999988686432
Q gi|254780926|r 5 SNQDDNDDFACGRKKIDA-------QEERKIRLASMLRKNLHRRKG 43 (49)
Q Consensus 5 snqddnddfacgrkkida-------qeerkirlasmlrknlhrrkg 43 (49)
.+|.|.+++.+.-..||+ -++-.-++..|.++|-|.|+-
T Consensus 19 ~GQtDE~ELG~sY~~ID~~L~~~~i~~e~ve~I~~~~~~s~HKR~~ 64 (75)
T 1wxi_A 19 PSLPDEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEHKRRP 64 (75)
T ss_dssp ----CHHHHSSCHHHHHHHHTTCCCCHHHHHHHHHHHHHTGGGGSS
T ss_pred CCCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999988859899999999971799999999999999987756389
No 6
>>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} (A:)
Probab=10.84 E-value=1.3e+02 Score=13.38 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=22.0
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 52122334320767787689999999
Q gi|254780926|r 10 NDDFACGRKKIDAQEERKIRLASMLR 35 (49)
Q Consensus 10 nddfacgrkkidaqeerkirlasmlr 35 (49)
+++|..|-..||.|-..-+++..-|.
T Consensus 11 ~~~~~~Gi~~ID~qH~~l~~~in~l~ 36 (113)
T 2hmq_A 11 DISFRTFYTIIDDEHKTLFNGILLLS 36 (113)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98862598999999999999999999
No 7
>>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A {Saccharomyces cerevisiae} PDB: 2qj0_A (A:780-907)
Probab=10.48 E-value=1.4e+02 Score=13.31 Aligned_cols=20 Identities=50% Similarity=0.486 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 87689999999886864324
Q gi|254780926|r 25 ERKIRLASMLRKNLHRRKGQ 44 (49)
Q Consensus 25 erkirlasmlrknlhrrkgq 44 (49)
|---|||+||.-||..--|.
T Consensus 5 eiv~Rla~MLny~L~~LvGP 24 (128)
T 2qiz_A 5 EIVYRLASMLNYNLESLVGP 24 (128)
T ss_dssp TTHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999997174
No 8
>>1vd7_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1vdb_A 1vd9_A 1wnk_A (A:)
Probab=10.10 E-value=1e+02 Score=13.99 Aligned_cols=13 Identities=54% Similarity=0.639 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6778768999999
Q gi|254780926|r 22 AQEERKIRLASML 34 (49)
Q Consensus 22 aqeerkirlasml 34 (49)
..|||..|||.|-
T Consensus 2 tseeraarlakms 14 (26)
T 1vd7_A 2 TSEERAARLAKMS 14 (26)
T ss_dssp CHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHH
T ss_conf 4489999999988
No 9
>>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} (A:53-107)
Probab=8.82 E-value=1.1e+02 Score=13.86 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=14.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43207677876899999998868643
Q gi|254780926|r 17 RKKIDAQEERKIRLASMLRKNLHRRK 42 (49)
Q Consensus 17 rkkidaqeerkirlasmlrknlhrrk 42 (49)
.......|.| +|-.|+++||-.-.
T Consensus 20 v~SFSVKepr--~ly~Ml~rNLv~v~ 43 (55)
T 1ycq_A 20 VQEFSVKEPR--RLYAMISRNLVSAN 43 (55)
T ss_dssp CSEEETTCHH--HHHHHHHTTEEESC
T ss_pred CCCEEECCCH--HHHHHHHHHHHCCC
T ss_conf 8852333827--89999986510112
No 10
>>2mhr_A Myohemerythrin; oxygen binding; 1.30A {Themiste zostericola} (A:)
Probab=8.66 E-value=1.6e+02 Score=12.92 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 957787766521223343207677876899999998
Q gi|254780926|r 1 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRK 36 (49)
Q Consensus 1 mkigsnqddnddfacgrkkidaqeerkirlasmlrk 36 (49)
|+.-+.-.=+++|++|-..||.|-..-+.+..-|..
T Consensus 2 ~~~~~~i~W~~~~svG~~~iD~~H~~l~~~in~l~~ 37 (118)
T 2mhr_A 2 WEIPEPYVWDESFRVFYEQLDEEHKKIFKGIFDCIR 37 (118)
T ss_dssp CCCCSSCCCCGGGCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999988888888746999999999999999999999
Done!