RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62] (49 letters) >gnl|CDD|177567 PHA03244, PHA03244, large tegument protein UL36; Provisional. Length = 478 Score = 25.7 bits (56), Expect = 2.9 Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 6 NQDDNDDFACGRKKIDAQEERKIRLASMLRKNL 38 + DDN D + DA EE + R +R+N Sbjct: 327 DPDDNFDIEPQPRGHDAHEEAENRFFDAIRENR 359 >gnl|CDD|162878 TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium. Length = 126 Score = 25.4 bits (56), Expect = 3.4 Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 10 NDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49 +D + G ++IDAQ + L + L L G+ LK Sbjct: 3 DDSLSTGIEEIDAQHKELFELINELYDALSAGNGKDELKE 42 >gnl|CDD|162065 TIGR00844, c_cpa1, na(+)/h(+) antiporter. This model is specific for the fungal members of this family. Length = 810 Score = 24.1 bits (52), Expect = 9.2 Identities = 8/28 (28%), Positives = 13/28 (46%) Query: 3 IGSNQDDNDDFACGRKKIDAQEERKIRL 30 I S DD + + I + E R+I+ Sbjct: 611 IESEIDDVYTYENDSESIASSERRRIKK 638 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0717 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 772,005 Number of extensions: 31030 Number of successful extensions: 49 Number of sequences better than 10.0: 1 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 6 Length of query: 49 Length of database: 5,994,473 Length adjustment: 22 Effective length of query: 27 Effective length of database: 5,519,097 Effective search space: 149015619 Effective search space used: 149015619 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.1 bits)