HHsearch alignment for GI: 254780927 and conserved domain: COG0128
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism].
Probab=99.84 E-value=1.1e-19 Score=147.59 Aligned_cols=301 Identities=21% Similarity=0.283 Sum_probs=195.8
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC--CCCCCCCCCCCCCCCEEEEEEEC-CC-CCCC
Q ss_conf 21045305866333201212343332103322456861489995024--43333333434666113566504-44-4687
Q gi|254780927|r 116 GYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKG--LRGTSYTFPKVSVGATQVMMMVA-SL-SHGD 191 (430)
Q Consensus 116 ~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~--l~g~~i~l~~~S~q~~s~lLlaA-~~-a~G~ 191 (430)
T Consensus 38 g~s~i~----~~L~s~D~~~tl~a~~~lG~~i~~~~~~--~~v~g~g~~~~~~~~~l~~GnSGTt~R~l~glla~~~~~~ 111 (428)
T COG0128 38 GESTIT----NLLDSEDTLATLEALRALGARIEKEGDT--LVVRGTGGELKEPPAVLDCGNSGTTLRLLTGLLALGSPGE 111 (428)
T ss_pred CCEEEE----EEECCHHHHHHHHHHHHHCCEEECCCCE--EEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCE
T ss_conf 965994----3225686999999999708748855877--9996798875799744560562658999999996178970
Q ss_pred CCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCCC---CEEECCCCCCCCCCCEECCCCHHCCH--HHHHCC-CCCCCEEE
Q ss_conf 3323322--2015998998750145443202443---21202554222234200143100001--000001-24442010
Q gi|254780927|r 192 TSIYNAA--REPEVVDLAHCLNSMGAKISGMGSS---TITIQGVTSLSGTRHRILPDRIEAGT--YAMAVA-MTGGDVIL 263 (430)
Q Consensus 192 t~I~~~~--~~P~i~~t~~~L~~~Gv~I~~~~~~---~i~I~g~~~l~~~~~~V~~D~ssAa~--fl~Aaa-lt~g~i~i 263 (430)
T Consensus 112 ~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~--~~~~~i~i~~~~SSq~vsslL~~a~l~~~~~~~~ 189 (428)
T COG0128 112 TVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG--LKGGEVEIDGPVSSQQVSSLLLLAPLLAEGTTII 189 (428)
T ss_pred EEEECCHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCEEEECC--CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99987832310976788999997796899468888678799778--7785289845650799999999876258983898
Q ss_pred E--CCCCCCCC-CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEEC
Q ss_conf 0--23456421-0468897526743674451267532676431576215356664210134667631356641-673204
Q gi|254780927|r 264 K--MTDSSLLK-TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGIS-HITETI 339 (430)
Q Consensus 264 ~--n~~~~~~~-~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p~la~laa~A~G~s-~I~e~i 339 (430)
T Consensus 190 ~~~~~~s~~yid~T~~mL~~FGv~v~~~~~~~~i~~g~-~~~~~~~~V---pgD~SS-AafflaAaai~~~~~~i~~~~v 264 (428)
T COG0128 190 VGGVLESKPYIDHTLDMLKAFGVEVENEGYRFYIPGGQ-KLTPGDYDV---PGDYSS-AAFFLAAAAITPRSTGITLKNV 264 (428)
T ss_pred ECCCCCCCCHHHHHHHHHHHCCCEEEEECCEEEECCCC-CCCCCEEEC---CCCHHH-HHHHHHHHHHCCCCCEEEECCC
T ss_conf 45756776679999999998698389604389988986-216754782---797266-9999999984278750450157
Q ss_pred C--HHHHHHHHHHHHCCCEEEEECCE-EEEECCCCCEEEEEEECC-HHHHHHHHHHHHHCCCEEEEECCCEECCCC----
Q ss_conf 6--56756678897488589997896-999888985101566081-899999999998549819992433011778----
Q gi|254780927|r 340 F--ENRFMHVQELVRLGARISLSGQT-ARVEGVQGLRGAPVMATD-LRASVSLVIAALAAQGETEISRVYHLDRGF---- 411 (430)
Q Consensus 340 ~--e~R~~~~~eL~klG~~v~~~~d~-l~I~G~~~l~g~~v~~~D-HRiaMa~~ia~L~a~g~~~I~~~~~i~ksy---- 411 (430)
T Consensus 265 ~~~~~~~~~~~vl~~MGa~i~~~~~~~l~V~~~~~l~gi~vd~~~~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi 344 (428)
T COG0128 265 QPNPTDKGILDVLEKMGADIEIGDDSVLRVRGSGELKGIEVDMDDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRI 344 (428)
T ss_pred CCCCCHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHCCHHHH
T ss_conf 76866048999999759917974683499962587567676754382278999999985479769976577320302479
Q ss_pred CCHHHHHHHCCCEEEEEC
Q ss_conf 487889986697899951
Q gi|254780927|r 412 ECLEKKLSRCGALIQRIK 429 (430)
Q Consensus 412 p~f~~~L~~LGa~Ie~i~ 429 (430)
T Consensus 345 ~a~a~eL~klG~~v~e~~ 362 (428)
T COG0128 345 AAMATELRKLGVEVEETE 362 (428)
T ss_pred HHHHHHHHHCCCEEEECC
T ss_conf 999999996586778648