HHsearch alignment for GI: 254780927 and conserved domain: COG0128

>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism].
Probab=99.84  E-value=1.1e-19  Score=147.59  Aligned_cols=301  Identities=21%  Similarity=0.283  Sum_probs=195.8

Q ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC--CCCCCCCCCCCCCCCEEEEEEEC-CC-CCCC
Q ss_conf             21045305866333201212343332103322456861489995024--43333333434666113566504-44-4687
Q gi|254780927|r  116 GYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKG--LRGTSYTFPKVSVGATQVMMMVA-SL-SHGD  191 (430)
Q Consensus       116 ~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~--l~g~~i~l~~~S~q~~s~lLlaA-~~-a~G~  191 (430)
T Consensus        38 g~s~i~----~~L~s~D~~~tl~a~~~lG~~i~~~~~~--~~v~g~g~~~~~~~~~l~~GnSGTt~R~l~glla~~~~~~  111 (428)
T COG0128          38 GESTIT----NLLDSEDTLATLEALRALGARIEKEGDT--LVVRGTGGELKEPPAVLDCGNSGTTLRLLTGLLALGSPGE  111 (428)
T ss_pred             CCEEEE----EEECCHHHHHHHHHHHHHCCEEECCCCE--EEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCE
T ss_conf             965994----3225686999999999708748855877--9996798875799744560562658999999996178970


Q ss_pred             CCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCCC---CEEECCCCCCCCCCCEECCCCHHCCH--HHHHCC-CCCCCEEE
Q ss_conf             3323322--2015998998750145443202443---21202554222234200143100001--000001-24442010
Q gi|254780927|r  192 TSIYNAA--REPEVVDLAHCLNSMGAKISGMGSS---TITIQGVTSLSGTRHRILPDRIEAGT--YAMAVA-MTGGDVIL  263 (430)
Q Consensus       192 t~I~~~~--~~P~i~~t~~~L~~~Gv~I~~~~~~---~i~I~g~~~l~~~~~~V~~D~ssAa~--fl~Aaa-lt~g~i~i  263 (430)
T Consensus       112 ~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~--~~~~~i~i~~~~SSq~vsslL~~a~l~~~~~~~~  189 (428)
T COG0128         112 TVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG--LKGGEVEIDGPVSSQQVSSLLLLAPLLAEGTTII  189 (428)
T ss_pred             EEEECCHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCEEEECC--CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99987832310976788999997796899468888678799778--7785289845650799999999876258983898


Q ss_pred             E--CCCCCCCC-CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEEC
Q ss_conf             0--23456421-0468897526743674451267532676431576215356664210134667631356641-673204
Q gi|254780927|r  264 K--MTDSSLLK-TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGIS-HITETI  339 (430)
Q Consensus       264 ~--n~~~~~~~-~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p~la~laa~A~G~s-~I~e~i  339 (430)
T Consensus       190 ~~~~~~s~~yid~T~~mL~~FGv~v~~~~~~~~i~~g~-~~~~~~~~V---pgD~SS-AafflaAaai~~~~~~i~~~~v  264 (428)
T COG0128         190 VGGVLESKPYIDHTLDMLKAFGVEVENEGYRFYIPGGQ-KLTPGDYDV---PGDYSS-AAFFLAAAAITPRSTGITLKNV  264 (428)
T ss_pred             ECCCCCCCCHHHHHHHHHHHCCCEEEEECCEEEECCCC-CCCCCEEEC---CCCHHH-HHHHHHHHHHCCCCCEEEECCC
T ss_conf             45756776679999999998698389604389988986-216754782---797266-9999999984278750450157


Q ss_pred             C--HHHHHHHHHHHHCCCEEEEECCE-EEEECCCCCEEEEEEECC-HHHHHHHHHHHHHCCCEEEEECCCEECCCC----
Q ss_conf             6--56756678897488589997896-999888985101566081-899999999998549819992433011778----
Q gi|254780927|r  340 F--ENRFMHVQELVRLGARISLSGQT-ARVEGVQGLRGAPVMATD-LRASVSLVIAALAAQGETEISRVYHLDRGF----  411 (430)
Q Consensus       340 ~--e~R~~~~~eL~klG~~v~~~~d~-l~I~G~~~l~g~~v~~~D-HRiaMa~~ia~L~a~g~~~I~~~~~i~ksy----  411 (430)
T Consensus       265 ~~~~~~~~~~~vl~~MGa~i~~~~~~~l~V~~~~~l~gi~vd~~~~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi  344 (428)
T COG0128         265 QPNPTDKGILDVLEKMGADIEIGDDSVLRVRGSGELKGIEVDMDDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRI  344 (428)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHCCHHHH
T ss_conf             76866048999999759917974683499962587567676754382278999999985479769976577320302479


Q ss_pred             CCHHHHHHHCCCEEEEEC
Q ss_conf             487889986697899951
Q gi|254780927|r  412 ECLEKKLSRCGALIQRIK  429 (430)
Q Consensus       412 p~f~~~L~~LGa~Ie~i~  429 (430)
T Consensus       345 ~a~a~eL~klG~~v~e~~  362 (428)
T COG0128         345 AAMATELRKLGVEVEETE  362 (428)
T ss_pred             HHHHHHHHHCCCEEEECC
T ss_conf             999999996586778648