HHsearch alignment for GI: 254780927 and conserved domain: COG0430
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification].
Probab=93.82 E-value=0.35 Score=27.24 Aligned_cols=149 Identities=12% Similarity=0.160 Sum_probs=81.8
Q ss_pred HHHHHHHHHHC----CCCCCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCEE----EEEEECCCCCCCCCCC-----CCC
Q ss_conf 21234333210----332245-686148999502443333333434666113----5665044446873323-----322
Q gi|254780927|r 133 VDLFVDSLKSL----GVVIKI-DGGYVDARVSSKGLRGTSYTFPKVSVGATQ----VMMMVASLSHGDTSIY-----NAA 198 (430)
Q Consensus 133 ~~~l~~~L~~l----Ga~i~~-~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s----~lLlaA~~a~G~t~I~-----~~~ 198 (430)
T Consensus 46 ~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg~i~gG~~~~digTAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~ 125 (341)
T COG0430 46 KRQHLTAVRAAAEICNAEVEGAELGSTELVFRPGKIRGGDYRVDIGTAGSITLVLQTLLPLLLFADGPSRITVTGGTDVP 125 (341)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEECCEEEEEECCCCCEEEEHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 79999999999986187584103362699983462117617998137885546388778777337997499997754799
Q ss_pred CCHHHH----HHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCC--CEECCCCHHCCHHHHHCCCCC-------CCEEEEC
Q ss_conf 201599----899875014544320244321202554222234--200143100001000001244-------4201002
Q gi|254780927|r 199 REPEVV----DLAHCLNSMGAKISGMGSSTITIQGVTSLSGTR--HRILPDRIEAGTYAMAVAMTG-------GDVILKM 265 (430)
Q Consensus 199 ~~P~i~----~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~--~~V~~D~ssAa~fl~Aaalt~-------g~i~i~n 265 (430)
T Consensus 126 ~aP~vDyir~v~lp~L~k~G~~~~l~v----lkRG~yP~GGGeV~~~V~p~~~~~--~--l~l~e~g~i~~v~Gia~~~~ 197 (341)
T COG0430 126 WAPPVDYIRRVTLPVLRKMGIECELEV----LKRGFYPRGGGEVLLTVEPPKEKL--P--LHLTERGEIEKVRGIAHSTN 197 (341)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEE----EECCCCCCCCCEEEEEECCCCCCC--C--EEEECCCCEEEEEEEEEECC
T ss_conf 899820446637999986162059999----832458799828999984865568--6--02303563467898997225
Q ss_pred CCCCCC----CCHHHHHHHCCCCEEEEC
Q ss_conf 345642----104688975267436744
Q gi|254780927|r 266 TDSSLL----KTVFKVMRQTGVDIDIID 289 (430)
Q Consensus 266 ~~~~~~----~~~l~iL~~mGa~i~~~~ 289 (430)
T Consensus 198 lp~hvAeRqa~~A~~~L~~~~~~v~i~~ 225 (341)
T COG0430 198 LPPHVAERQAEAAKELLGKLGLEVEIYT 225 (341)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9917889999999998644368832788