HHsearch alignment for GI: 254780927 and conserved domain: PRK04204
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional.
Probab=95.23 E-value=0.018 Score=35.56 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=63.6
Q ss_pred HHHHHHHHCCCCEEEECCCCH-------HHHHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 999999746996999869836-------9999999999974-98999927741142024525999436665864440234
Q gi|254780927|r 27 PVMIASLLTSETLTLENIPDL-------ADVKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV 98 (430)
Q Consensus 27 Ral~aaaLa~g~s~i~n~~~s-------~D~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (430)
T Consensus 18 ~alaLS~itgkpi~I~nIRa~R~~PGL~~QHl~~l~l~~~i~~a~v~g~~~G-------St~l~F~Pg~i~~g~~~-~d~ 89 (339)
T PRK04204 18 TALSLSAITGKPVRITNIRAGRKKPGLLRQHLTAVKAAAEICNAEVEGAELG-------SQELVFIPGPIRGGDYR-FDI 89 (339)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECC-------CEEEEEECCCCCCCEEE-EEC
T ss_conf 9999999868987999735799898951999999999999709868622359-------65799968864586489-855
Q ss_pred HHCCCCCCCCCCC----CCCCCCEEEECCCCCCCC-CCHHHHH----HHHHHHCCCCCCC---CCCCEE
Q ss_conf 3113211022533----233321045305866333-2012123----4333210332245---686148
Q gi|254780927|r 99 SKMRASFWVIGPL----LAREGYARISLPGGCAIG-TRPVDLF----VDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 99 ~~~r~s~~~l~~l----la~~~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa~i~~---~~g~~p 155 (430)
T Consensus 90 gTAgSi~L~lQ~~Lp~l~f~~~~~~l~l~GGT~v~~sPs~Dy~~~v~lP~l~~~G~~~~l~v~kRGfyP 158 (339)
T PRK04204 90 GTAGSITLVLQTLLPALLFADGPSRVTISGGTDVPWAPPIDYIRRVFLPLLARMGIRVEIELLRRGFYP 158 (339)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 887312478999999998679965999984348999989899999999999971986799998536788