HHsearch alignment for GI: 254780927 and conserved domain: TIGR03399
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=97.05 E-value=0.0028 Score=40.82 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=61.4
Q ss_pred HHHHHHHCCCCEEEECCCCHH------H-HHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 999997469969998698369------9-99999999974-989999277411420245259994366658644402343
Q gi|254780927|r 28 VMIASLLTSETLTLENIPDLA------D-VKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVS 99 (430)
Q Consensus 28 al~aaaLa~g~s~i~n~~~s~------D-~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (430)
T Consensus 18 alaLS~itgkpi~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~-------gst~l~F~Pg~i~~g~~~-~d~g 89 (326)
T TIGR03399 18 ALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAEL-------GSTELEFIPGKIRGGDYR-FDIG 89 (326)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEC-------CCEEEEEECCCCCCCEEE-EECC
T ss_conf 99999976897799846899879885699999999999971985841144-------857999968854575168-7569
Q ss_pred HCCCCCCCCCCCC--CCC--CCEEEECCCCCCCC-CCHHHH----HHHHHHHCCCCCCC---CCCCEE
Q ss_conf 1132110225332--333--21045305866333-201212----34333210332245---686148
Q gi|254780927|r 100 KMRASFWVIGPLL--ARE--GYARISLPGGCAIG-TRPVDL----FVDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 100 ~~r~s~~~l~~ll--a~~--~~~~v~l~G~~~l~-~RP~~~----l~~~L~~lGa~i~~---~~g~~p 155 (430)
T Consensus 90 tagsi~L~lq~llp~~~fa~~~~~l~l~GgT~v~~sPsvDy~~~v~lP~l~~fG~~~~~~i~kRGfyP 157 (326)
T TIGR03399 90 TAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGFYP 157 (326)
T ss_pred CCCEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 88366522999999996389976999985558999998899999999999973996799999556789