HHsearch alignment for GI: 254780927 and conserved domain: TIGR03399

>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=97.05  E-value=0.0028  Score=40.82  Aligned_cols=120  Identities=19%  Similarity=0.232  Sum_probs=61.4

Q ss_pred             HHHHHHHCCCCEEEECCCCHH------H-HHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf             999997469969998698369------9-99999999974-989999277411420245259994366658644402343
Q gi|254780927|r   28 VMIASLLTSETLTLENIPDLA------D-VKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVS   99 (430)
Q Consensus        28 al~aaaLa~g~s~i~n~~~s~------D-~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (430)
T Consensus        18 alaLS~itgkpi~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~-------gst~l~F~Pg~i~~g~~~-~d~g   89 (326)
T TIGR03399        18 ALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAEL-------GSTELEFIPGKIRGGDYR-FDIG   89 (326)
T ss_pred             HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEC-------CCEEEEEECCCCCCCEEE-EECC
T ss_conf             99999976897799846899879885699999999999971985841144-------857999968854575168-7569


Q ss_pred             HCCCCCCCCCCCC--CCC--CCEEEECCCCCCCC-CCHHHH----HHHHHHHCCCCCCC---CCCCEE
Q ss_conf             1132110225332--333--21045305866333-201212----34333210332245---686148
Q gi|254780927|r  100 KMRASFWVIGPLL--ARE--GYARISLPGGCAIG-TRPVDL----FVDSLKSLGVVIKI---DGGYVD  155 (430)
Q Consensus       100 ~~r~s~~~l~~ll--a~~--~~~~v~l~G~~~l~-~RP~~~----l~~~L~~lGa~i~~---~~g~~p  155 (430)
T Consensus        90 tagsi~L~lq~llp~~~fa~~~~~l~l~GgT~v~~sPsvDy~~~v~lP~l~~fG~~~~~~i~kRGfyP  157 (326)
T TIGR03399        90 TAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGFYP  157 (326)
T ss_pred             CCCEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             88366522999999996389976999985558999998899999999999973996799999556789