HHsearch alignment for GI: 254780927 and conserved domain: cd00874
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=93.63 E-value=0.098 Score=30.81 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=62.3
Q ss_pred HHHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 9999997469969998698369-------999999999974-98999927741142024525999436665864440234
Q gi|254780927|r 27 PVMIASLLTSETLTLENIPDLA-------DVKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV 98 (430)
Q Consensus 27 Ral~aaaLa~g~s~i~n~~~s~-------D~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (430)
T Consensus 15 ~alaLS~ltg~pi~I~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~v~g~~~-------gst~l~F~Pg~i~~g~~~-~d~ 86 (326)
T cd00874 15 TALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAEL-------GSTELEFEPGKIKGGDYE-FDI 86 (326)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCC-------CCEEEEEECCCCCCCEEE-EEC
T ss_conf 999999976898799983689989886799999999999972976853035-------868999968844587267-746
Q ss_pred HHCCCCCCCCCCCC--CCC--CCEEEECCCCCCCC-CCHHHHH----HHHHHHCCCCCCC---CCCCEE
Q ss_conf 31132110225332--333--21045305866333-2012123----4333210332245---686148
Q gi|254780927|r 99 SKMRASFWVIGPLL--ARE--GYARISLPGGCAIG-TRPVDLF----VDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 99 ~~~r~s~~~l~~ll--a~~--~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa~i~~---~~g~~p 155 (430)
T Consensus 87 ~tagSi~L~lq~llp~~~f~~~~~~ltl~GgT~v~~sPs~Dy~~~v~lP~l~~~Gi~~~l~i~kRGf~P 155 (326)
T cd00874 87 GTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFYP 155 (326)
T ss_pred CCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 988510225999999997579975999986558999998789999999999976986799998447789