HHsearch alignment for GI: 254780927 and conserved domain: cd00874

>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=93.63  E-value=0.098  Score=30.81  Aligned_cols=121  Identities=17%  Similarity=0.221  Sum_probs=62.3

Q ss_pred             HHHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf             9999997469969998698369-------999999999974-98999927741142024525999436665864440234
Q gi|254780927|r   27 PVMIASLLTSETLTLENIPDLA-------DVKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV   98 (430)
Q Consensus        27 Ral~aaaLa~g~s~i~n~~~s~-------D~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (430)
T Consensus        15 ~alaLS~ltg~pi~I~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~v~g~~~-------gst~l~F~Pg~i~~g~~~-~d~   86 (326)
T cd00874          15 TALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAEL-------GSTELEFEPGKIKGGDYE-FDI   86 (326)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCC-------CCEEEEEECCCCCCCEEE-EEC
T ss_conf             999999976898799983689989886799999999999972976853035-------868999968844587267-746


Q ss_pred             HHCCCCCCCCCCCC--CCC--CCEEEECCCCCCCC-CCHHHHH----HHHHHHCCCCCCC---CCCCEE
Q ss_conf             31132110225332--333--21045305866333-2012123----4333210332245---686148
Q gi|254780927|r   99 SKMRASFWVIGPLL--ARE--GYARISLPGGCAIG-TRPVDLF----VDSLKSLGVVIKI---DGGYVD  155 (430)
Q Consensus        99 ~~~r~s~~~l~~ll--a~~--~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa~i~~---~~g~~p  155 (430)
T Consensus        87 ~tagSi~L~lq~llp~~~f~~~~~~ltl~GgT~v~~sPs~Dy~~~v~lP~l~~~Gi~~~l~i~kRGf~P  155 (326)
T cd00874          87 GTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFYP  155 (326)
T ss_pred             CCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             988510225999999997579975999986558999998789999999999976986799998447789