HHsearch alignment for GI: 254780927 and conserved domain: cd00875
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=93.16 E-value=0.68 Score=25.32 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=50.7
Q ss_pred HHHHHHHHC-----CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEE----EEEEECCCCCCCCCCC-----CCCCC
Q ss_conf 234333210-----332245686148999502443333333434666113----5665044446873323-----32220
Q gi|254780927|r 135 LFVDSLKSL-----GVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQ----VMMMVASLSHGDTSIY-----NAARE 200 (430)
Q Consensus 135 ~l~~~L~~l-----Ga~i~~~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s----~lLlaA~~a~G~t~I~-----~~~~~ 200 (430)
T Consensus 44 qhl~~l~l~~~it~g~~~~~~~~st~l~f~Pg~i~gg~~~~d~~ta~si~l~lq~ll~l~~f~~~~~~l~l~GgT~~~~~ 123 (341)
T cd00875 44 HEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGLITGGVLNHDCPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGD 123 (341)
T ss_pred HHHHHHHHHHHHCCCCEECCCCCCEEEEEECCCEECCCEEEECCCCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 99999999999618648514348338999798210785699678863409999999999974799739999925699999
Q ss_pred HHHH----HHHHHHHCCCCC
Q ss_conf 1599----899875014544
Q gi|254780927|r 201 PEVV----DLAHCLNSMGAK 216 (430)
Q Consensus 201 P~i~----~t~~~L~~~Gv~ 216 (430)
T Consensus 124 psvD~~~~v~lp~l~~fGi~ 143 (341)
T cd00875 124 PSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred CCHHHHHHHHHHHHHHHCCC
T ss_conf 89899999999999985897