HHsearch alignment for GI: 254780927 and conserved domain: cd01556

>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00  E-value=0  Score=671.60  Aligned_cols=394  Identities=25%  Similarity=0.362  Sum_probs=344.2

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCC
Q ss_conf             13789769646689999999974699699986983699999999999749899992774114202452599943666586
Q gi|254780927|r   12 LNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDL   91 (430)
Q Consensus        12 L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (430)
T Consensus         1 L~G~v~ipgsKs~s~r~li~aaL~~g~~~i~n~~~~~Dv~~~~~~l~~lG~~i~~~~~~~~i~~~----------~~~~~   70 (409)
T cd01556           1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEEGGTVEIVGG----------GGLGL   70 (409)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECC----------CCCCC
T ss_conf             93899878748999999999996599899904890399999999999879989980899999888----------88777


Q ss_pred             C-CCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCCEEEEEECCCCCCCCC
Q ss_conf             4-4402343113211022533233321045305866333201212343332103322456--861489995024433333
Q gi|254780927|r   92 T-GSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKID--GGYVDARVSSKGLRGTSY  168 (430)
Q Consensus        92 ~-~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~--~g~~p~~i~g~~l~g~~i  168 (430)
T Consensus        71 ~~~~~l~~g~sGt~~R~l~~ll~~~~-~~~~l~G~~~l~~RPi~~~i~~L~~lGa~i~~~~~~~~~~~~-~~~~l~~~~i  148 (409)
T cd01556          71 PPEAVLDCGNSGTTMRLLTGLLALQG-GDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYPPLI-GGGGLKGGEV  148 (409)
T ss_pred             CCCHHHHHCCCHHHHHHHHHHHCCCC-CEEEEECCHHHCCCCCHHHHHHHHHCCCEEEECCCCCCEEEE-CCCCCCCCEE
T ss_conf             87411100024121765766651588-369983773425898468999999889999962797533472-4899505289


Q ss_pred             CCCCC-CCCCEEEEEEECCCCCCCCCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCH
Q ss_conf             33434-6661135665044446873323322--20159989987501454432024432120255422223420014310
Q gi|254780927|r  169 TFPKV-SVGATQVMMMVASLSHGDTSIYNAA--REPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRI  245 (430)
Q Consensus       169 ~l~~~-S~q~~s~lLlaA~~a~G~t~I~~~~--~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~s  245 (430)
T Consensus       149 ~l~~~~SSQ~~SalLmaa~~a~g~t~i~~~~~es~~yvd~T~~~L~~~Ga~I~~~~~~~i~I~g~~~l~~~~~~V~~D~s  228 (409)
T cd01556         149 EIPGAVSSQFKSALLLAAPLAEGPTTIIIGELESKPYIDHTERMLRAFGAEVEVDGYRTITVKGGQKYKGPEYTVEGDAS  228 (409)
T ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCEECCCCCHH
T ss_conf             97764551188799999873699579974674661199999999985798289639819997786334675013788988


Q ss_pred             HCCHHHHHCCCCCCCEEEECCCCCCCC-CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf             000100000124442010023456421-0468897526743674451267532676431576215356664210134667
Q gi|254780927|r  246 EAGTYAMAVAMTGGDVILKMTDSSLLK-TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMA  324 (430)
Q Consensus       246 sAa~fl~Aaalt~g~i~i~n~~~~~~~-~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p~la~  324 (430)
T Consensus       229 ~A~~~l~aaalt~~~v~i~~v~~~~~d~~~~~~L~~mG~~i~~~~~~~i~~~~~~~l~~~~i~~~~~p----Dl~p~lav  304 (409)
T cd01556         229 SAAFFLAAAAITGSEIVIKNVGLNSGDTGIIDVLKEMGADIEIGNEDTVVVESGGKLKGIDIDGNDIP----DEAPTLAV  304 (409)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCEEECCCCCC----HHHHHHHH
T ss_conf             99999999997699499907783211799999999879989994697899735888544782587686----05799999


Q ss_pred             HHHCCCCCEEEEE----ECCH-HHHHH-HHHHHHCCCEEEEECCEEEEECCC-CCEEEEEEE-CCHHHHHHHHHHHHHCC
Q ss_conf             6313566416732----0465-67566-788974885899978969998889-851015660-81899999999998549
Q gi|254780927|r  325 MMCCAAGISHITE----TIFE-NRFMH-VQELVRLGARISLSGQTARVEGVQ-GLRGAPVMA-TDLRASVSLVIAALAAQ  396 (430)
Q Consensus       325 laa~A~G~s~I~e----~i~e-~R~~~-~~eL~klG~~v~~~~d~l~I~G~~-~l~g~~v~~-~DHRiaMa~~ia~L~a~  396 (430)
T Consensus       305 la~~a~G~s~i~~~~~lr~KEsdRi~a~~~eL~k~Ga~i~~~~d~l~I~G~~~~~~~~~~~t~~DhR~ama~~iaal~a~  384 (409)
T cd01556         305 LAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDGLIIEGGPLKGAGVEVYTYGDHRIAMSFAIAGLVAE  384 (409)
T ss_pred             HHHHCCCCEEEEECCCCCCEECCHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHCC
T ss_conf             99856897278732011203130789999999977997999799799989887788515889998899999999998679


Q ss_pred             CEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf             8199924330117784878899866
Q gi|254780927|r  397 GETEISRVYHLDRGFECLEKKLSRC  421 (430)
Q Consensus       397 g~~~I~~~~~i~ksyp~f~~~L~~L  421 (430)
T Consensus       385 ~~~~I~~~~~i~ksyp~f~~~l~~L  409 (409)
T cd01556         385 GGVTIEDPECVAKSFPNFFEDLESL  409 (409)
T ss_pred             CCEEEECCCEEECCCHHHHHHHHCC
T ss_conf             9899946637878656599998649