HHsearch alignment for GI: 254780927 and conserved domain: cd01556

>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=99.87  E-value=1.6e-20  Score=153.10  Aligned_cols=290  Identities=19%  Similarity=0.263  Sum_probs=182.3

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC--CCCCCCCCCCCCCEEEEEEE-CCCCCCCCCCCC--CCCCHH
Q ss_conf             3320121234333210332245686148999502443--33333343466611356650-444468733233--222015
Q gi|254780927|r  128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLR--GTSYTFPKVSVGATQVMMMV-ASLSHGDTSIYN--AAREPE  202 (430)
Q Consensus       128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~--g~~i~l~~~S~q~~s~lLla-A~~a~G~t~I~~--~~~~P~  202 (430)
T Consensus        34 ~~~~Dv~~~~~~l~~lG~~i~~~~~~~~--i~~~~~~~~~~~~~l~~g~sGt~~R~l~~ll~~~~~~~~l~G~~~l~~RP  111 (409)
T cd01556          34 LDSDDTLATLEALRALGAKIEEEGGTVE--IVGGGGLGLPPEAVLDCGNSGTTMRLLTGLLALQGGDSVLTGDESLRKRP  111 (409)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCEEE--EECCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCHHHCCCC
T ss_conf             9039999999999987998998089999--98888877787411100024121765766651588369983773425898


Q ss_pred             HHHHHHHHHCCCCCCCCCCC-CCEEECCCCCCCCCCCEECCCCHH--CCHHHHHCCCCCCCEEEECCCCCCC---CCHHH
Q ss_conf             99899875014544320244-321202554222234200143100--0010000012444201002345642---10468
Q gi|254780927|r  203 VVDLAHCLNSMGAKISGMGS-STITIQGVTSLSGTRHRILPDRIE--AGTYAMAVAMTGGDVILKMTDSSLL---KTVFK  276 (430)
Q Consensus       203 i~~t~~~L~~~Gv~I~~~~~-~~i~I~g~~~l~~~~~~V~~D~ss--Aa~fl~Aaalt~g~i~i~n~~~~~~---~~~l~  276 (430)
T Consensus       112 i~~~i~~L~~lGa~i~~~~~~~~~~~~~~~~l~~~~i~l~~~~SSQ~~SalLmaa~~a~g~t~i~~~~~es~~yvd~T~~  191 (409)
T cd01556         112 MGRLVDALRQLGAEIEGREGGGYPPLIGGGGLKGGEVEIPGAVSSQFKSALLLAAPLAEGPTTIIIGELESKPYIDHTER  191 (409)
T ss_pred             CHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH
T ss_conf             46899999988999996279753347248995052899776455118879999987369957997467466119999999


Q ss_pred             HHHHCCCCEEEECC-CEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEE-CCHHHHHHHHHHHH
Q ss_conf             89752674367445-1267532676431576215356664210--13466763135664167320-46567566788974
Q gi|254780927|r  277 VMRQTGVDIDIIDE-GIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITET-IFENRFMHVQELVR  352 (430)
Q Consensus       277 iL~~mGa~i~~~~~-~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~-i~e~R~~~~~eL~k  352 (430)
T Consensus       192 ~L~~~Ga~I~~~~~~~i~I~g~-~~l~~~~~~V~------~D~s~A~~~l~aaalt~~~v~i~~v~~~~~d~~~~~~L~~  264 (409)
T cd01556         192 MLRAFGAEVEVDGYRTITVKGG-QKYKGPEYTVE------GDASSAAFFLAAAAITGSEIVIKNVGLNSGDTGIIDVLKE  264 (409)
T ss_pred             HHHHCCCEEEECCCEEEEECCC-CCCCCCEECCC------CCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             9985798289639819997786-33467501378------8988999999999976994999077832117999999998


Q ss_pred             CCCEEEEEC-CEEEEECCCCCEEEEEEEC---CHHHHHHHHHHHHHCCCEEEEECCCEECC----CCCCHHHHHHHCCCE
Q ss_conf             885899978-9699988898510156608---18999999999985498199924330117----784878899866978
Q gi|254780927|r  353 LGARISLSG-QTARVEGVQGLRGAPVMAT---DLRASVSLVIAALAAQGETEISRVYHLDR----GFECLEKKLSRCGAL  424 (430)
Q Consensus       353 lG~~v~~~~-d~l~I~G~~~l~g~~v~~~---DHRiaMa~~ia~L~a~g~~~I~~~~~i~k----syp~f~~~L~~LGa~  424 (430)
T Consensus       265 mG~~i~~~~~~~i~~~~~~~l~~~~i~~~~~pD--l~p~lavla~~a~G~s~i~~~~~lr~KEsdRi~a~~~eL~k~Ga~  342 (409)
T cd01556         265 MGADIEIGNEDTVVVESGGKLKGIDIDGNDIPD--EAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGAD  342 (409)
T ss_pred             CCCEEEEECCCEEEECCCCCCCCEEECCCCCCH--HHHHHHHHHHHCCCCEEEEECCCCCCEECCHHHHHHHHHHHCCCE
T ss_conf             799899946978997358885447825876860--579999999856897278732011203130789999999977997


Q ss_pred             EEEE
Q ss_conf             9995
Q gi|254780927|r  425 IQRI  428 (430)
Q Consensus       425 Ie~i  428 (430)
T Consensus       343 i~~~  346 (409)
T cd01556         343 VEET  346 (409)
T ss_pred             EEEE
T ss_conf             9997