Query gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 430
No_of_seqs 127 out of 4002
Neff 7.3
Searched_HMMs 39220
Date Mon May 30 01:21:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780927.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09369 UDP-N-acetylglucosami 100.0 0 0 856.3 33.6 417 1-428 1-417 (417)
2 TIGR01072 murA UDP-N-acetylglu 100.0 0 0 852.1 28.5 419 1-427 1-443 (443)
3 PRK12830 UDP-N-acetylglucosami 100.0 0 0 803.6 33.0 417 1-430 1-417 (417)
4 cd01555 UdpNAET UDP-N-acetylgl 100.0 0 0 793.9 29.8 400 12-421 1-400 (400)
5 COG0766 MurA UDP-N-acetylgluco 100.0 0 0 748.0 29.1 420 1-430 1-420 (421)
6 TIGR01356 aroA 3-phosphoshikim 100.0 0 0 726.1 25.3 399 14-424 1-444 (444)
7 PRK11860 bifunctional 3-phosph 100.0 0 0 697.3 25.2 407 3-423 6-436 (662)
8 PRK02427 3-phosphoshikimate 1- 100.0 0 0 689.4 30.6 406 1-424 3-424 (424)
9 COG0128 AroA 5-enolpyruvylshik 100.0 0 0 687.0 23.5 403 7-425 8-428 (428)
10 cd01554 EPT-like Enol pyruvate 100.0 0 0 679.6 27.9 397 12-421 1-408 (408)
11 cd01556 EPSP_synthase EPSP syn 100.0 0 0 671.6 29.6 394 12-421 1-409 (409)
12 PRK11861 bifunctional prephena 100.0 0 0 664.5 27.4 405 2-421 241-670 (673)
13 pfam00275 EPSP_synthase EPSP s 100.0 0 0 666.6 24.9 402 6-418 1-415 (415)
14 KOG0692 consensus 100.0 0 0 405.2 15.0 410 9-428 102-553 (595)
15 PRK09369 UDP-N-acetylglucosami 99.9 8.2E-21 2.1E-25 155.0 18.8 278 131-428 48-349 (417)
16 cd01556 EPSP_synthase EPSP syn 99.9 1.6E-20 4.1E-25 153.1 17.1 290 128-428 34-346 (409)
17 PRK12830 UDP-N-acetylglucosami 99.9 6.5E-20 1.7E-24 149.2 17.5 302 27-362 95-417 (417)
18 cd01555 UdpNAET UDP-N-acetylgl 99.9 6.2E-20 1.6E-24 149.3 16.6 286 127-429 33-340 (400)
19 TIGR01356 aroA 3-phosphoshikim 99.9 1.5E-20 3.7E-25 153.4 13.4 309 107-429 16-373 (444)
20 cd01554 EPT-like Enol pyruvate 99.9 9.2E-20 2.3E-24 148.2 16.8 289 128-428 34-346 (408)
21 COG0128 AroA 5-enolpyruvylshik 99.8 1.1E-19 2.9E-24 147.6 15.1 301 116-429 38-362 (428)
22 TIGR01072 murA UDP-N-acetylglu 99.8 2.4E-19 6.2E-24 145.5 14.5 279 131-427 48-360 (443)
23 PRK02427 3-phosphoshikimate 1- 99.8 9.9E-19 2.5E-23 141.5 17.5 286 128-427 46-361 (424)
24 PRK11860 bifunctional 3-phosph 99.8 7.8E-19 2E-23 142.1 16.8 311 3-336 73-415 (662)
25 pfam00275 EPSP_synthase EPSP s 99.8 2.1E-18 5.2E-23 139.4 14.7 290 128-428 40-356 (415)
26 COG0766 MurA UDP-N-acetylgluco 99.8 1.4E-17 3.7E-22 133.9 14.7 279 133-427 50-349 (421)
27 PRK11861 bifunctional prephena 99.8 2.1E-17 5.2E-22 132.9 15.0 309 117-429 252-609 (673)
28 cd01553 EPT_RTPC-like This dom 98.9 1.5E-08 3.9E-13 75.1 10.8 162 249-421 15-211 (211)
29 KOG0692 consensus 97.8 0.00016 4.1E-09 49.0 8.1 286 128-427 138-477 (595)
30 TIGR03399 RNA_3prim_cycl RNA 3 97.0 0.0028 7.2E-08 40.8 7.0 120 28-155 18-157 (326)
31 cd01553 EPT_RTPC-like This dom 97.0 0.00071 1.8E-08 44.7 3.4 87 152-238 66-176 (211)
32 TIGR03400 18S_RNA_Rcl1p 18S rR 96.9 0.038 9.8E-07 33.5 12.2 109 28-145 12-138 (360)
33 LOAD_rna_Cyc consensus 96.6 0.014 3.7E-07 36.2 7.6 121 26-155 14-155 (329)
34 COG0430 RCL1 RNA 3'-terminal p 95.6 0.13 3.2E-06 30.1 8.4 17 28-44 20-36 (341)
35 PRK04204 RNA 3'-terminal-phosp 95.2 0.018 4.6E-07 35.6 3.2 121 27-155 18-158 (339)
36 cd00875 RNA_Cyclase_Class_I RN 95.0 0.29 7.4E-06 27.7 10.9 113 24-145 12-142 (341)
37 TIGR03400 18S_RNA_Rcl1p 18S rR 94.8 0.21 5.3E-06 28.7 7.5 80 137-216 45-139 (360)
38 pfam01137 RTC RNA 3'-terminal 93.9 0.054 1.4E-06 32.5 3.0 121 27-155 15-155 (330)
39 pfam01137 RTC RNA 3'-terminal 93.9 0.48 1.2E-05 26.3 7.9 84 135-218 44-145 (330)
40 COG0430 RCL1 RNA 3'-terminal p 93.8 0.35 8.8E-06 27.2 7.0 149 133-289 46-225 (341)
41 PRK04204 RNA 3'-terminal-phosp 93.6 0.57 1.5E-05 25.8 8.2 84 135-218 47-148 (339)
42 cd00874 RNA_Cyclase_Class_II R 93.6 0.098 2.5E-06 30.8 4.0 121 27-155 15-155 (326)
43 cd00875 RNA_Cyclase_Class_I RN 93.2 0.68 1.7E-05 25.3 7.8 82 135-216 44-143 (341)
44 cd00295 RNA_Cyclase RNA 3' pho 91.4 1.1 2.8E-05 23.9 8.8 120 27-155 15-155 (338)
45 PRK08818 prephenate dehydrogen 81.2 1.3 3.4E-05 23.4 2.6 31 259-289 298-328 (373)
46 PRK09522 bifunctional anthrani 74.7 2.5 6.3E-05 21.7 2.4 81 203-291 252-335 (531)
47 KOG3980 consensus 73.6 6.7 0.00017 18.9 9.2 125 14-148 5-147 (361)
48 PRK06434 cystathionine gamma-l 73.5 6.7 0.00017 18.8 6.6 16 134-149 118-133 (384)
49 PRK08861 cystathionine gamma-s 69.7 8.2 0.00021 18.3 7.6 16 134-149 107-122 (388)
50 TIGR03365 Bsubt_queE 7-cyano-7 69.0 2.6 6.6E-05 21.5 1.5 39 119-157 75-114 (238)
51 TIGR01324 cysta_beta_ly_B cyst 64.0 11 0.00027 17.6 5.0 84 204-295 245-344 (389)
52 PRK08064 cystathionine beta-ly 61.5 12 0.0003 17.3 7.6 24 3-26 9-35 (390)
53 COG0602 NrdG Organic radical a 60.9 5 0.00013 19.7 1.7 39 119-157 74-113 (212)
54 cd00614 CGS_like CGS_like: Cys 59.9 12 0.00032 17.1 6.5 12 138-149 98-109 (369)
55 TIGR02668 moaA_archaeal probab 58.6 4.5 0.00011 20.0 1.1 44 110-153 56-101 (324)
56 PRK08574 cystathionine gamma-s 58.3 13 0.00034 16.9 8.3 18 132-149 104-121 (384)
57 PRK07394 hypothetical protein; 54.4 15 0.00039 16.5 3.6 87 46-148 57-143 (342)
58 PRK08136 glycosyl transferase 52.8 13 0.00033 17.0 2.7 36 112-150 105-140 (316)
59 TIGR01343 hacA_fam homoaconita 51.4 17 0.00043 16.2 3.7 129 135-285 78-243 (432)
60 COG0547 TrpD Anthranilate phos 50.6 14 0.00036 16.8 2.6 159 40-230 47-223 (338)
61 TIGR01245 trpD anthranilate ph 50.6 9 0.00023 18.0 1.6 183 28-232 30-230 (331)
62 PRK06176 cystathionine gamma-s 48.7 19 0.00048 15.9 6.7 23 3-25 5-30 (379)
63 PRK06767 methionine gamma-lyas 46.9 20 0.00051 15.8 7.4 22 5-26 10-34 (386)
64 TIGR02495 NrdG2 anaerobic ribo 46.4 9.5 0.00024 17.9 1.2 91 119-214 66-172 (220)
65 COG4274 Uncharacterized conser 46.0 20 0.0005 15.8 2.7 71 322-399 11-83 (104)
66 PRK00188 trpD anthranilate pho 43.2 23 0.00058 15.4 3.9 85 45-149 50-134 (339)
67 TIGR02592 cas_Cas5h CRISPR-ass 42.2 12 0.0003 17.3 1.1 17 133-149 59-75 (268)
68 pfam12224 Amidoligase_2 Putati 40.2 25 0.00064 15.1 3.6 17 202-218 89-105 (250)
69 PRK07777 aminotransferase; Val 40.0 25 0.00065 15.1 5.8 47 321-367 270-319 (386)
70 pfam03484 B5 tRNA synthetase B 39.6 26 0.00066 15.1 2.8 24 274-297 24-47 (69)
71 TIGR00455 apsK adenylylsulfate 38.6 15 0.00037 16.6 1.2 119 177-310 17-158 (187)
72 PRK11059 regulatory protein Cs 38.2 27 0.00069 14.9 3.9 70 347-424 541-628 (642)
73 PRK07324 transaminase; Validat 37.8 27 0.0007 14.9 4.7 26 123-148 103-129 (373)
74 TIGR00433 bioB biotin synthase 37.6 28 0.00071 14.8 3.7 102 271-387 232-347 (350)
75 PRK08133 O-succinylhomoserine 37.0 28 0.00072 14.8 6.9 16 134-149 115-130 (391)
76 TIGR01465 cobM_cbiF precorrin- 36.2 13 0.00034 16.9 0.6 49 235-286 99-160 (252)
77 TIGR03549 conserved hypothetic 35.1 19 0.00049 15.9 1.3 43 25-67 135-179 (718)
78 PRK07050 cystathionine beta-ly 35.1 30 0.00077 14.6 5.7 16 134-149 119-134 (394)
79 PRK08912 hypothetical protein; 35.0 30 0.00077 14.6 5.9 23 345-367 297-319 (387)
80 PRK00652 lpxK tetraacyldisacch 34.8 31 0.00078 14.6 6.5 16 201-216 66-81 (334)
81 TIGR00563 rsmB ribosomal RNA s 34.3 26 0.00067 15.0 1.9 34 326-359 278-326 (487)
82 TIGR00263 trpB tryptophan synt 32.9 27 0.00069 14.9 1.7 92 55-165 63-168 (412)
83 KOG2263 consensus 32.6 33 0.00085 14.3 2.4 33 258-290 560-607 (765)
84 TIGR01497 kdpB K+-transporting 30.7 36 0.00091 14.1 2.8 84 272-362 348-471 (675)
85 PRK05939 hypothetical protein; 30.0 37 0.00093 14.1 4.8 17 134-150 99-115 (396)
86 TIGR00655 PurU formyltetrahydr 28.9 33 0.00083 14.4 1.6 23 347-369 257-289 (294)
87 pfam00712 DNA_pol3_beta DNA po 28.9 38 0.00098 13.9 2.2 28 272-299 73-104 (120)
88 PRK07504 O-succinylhomoserine 28.1 39 0.001 13.8 6.4 14 136-149 121-134 (397)
89 PRK07810 O-succinylhomoserine 28.1 39 0.001 13.8 5.8 33 380-422 372-406 (406)
90 PRK07671 cystathionine beta-ly 27.7 40 0.001 13.8 7.8 17 134-150 103-119 (377)
91 TIGR01458 HAD-SF-IIA-hyp3 HAD- 27.6 32 0.00083 14.4 1.4 134 134-287 53-199 (258)
92 TIGR02666 moaA molybdenum cofa 27.2 21 0.00054 15.6 0.4 33 111-143 57-89 (346)
93 PRK07812 O-acetylhomoserine am 26.3 42 0.0011 13.6 4.7 15 135-149 124-138 (436)
94 PRK09082 putative aminotransfe 26.0 43 0.0011 13.6 6.3 31 185-218 110-140 (386)
95 TIGR03470 HpnH hopanoid biosyn 26.0 37 0.00094 14.0 1.5 36 114-149 70-105 (318)
96 PRK05968 hypothetical protein; 25.6 44 0.0011 13.6 6.9 16 134-149 117-132 (389)
97 PRK05301 pyrroloquinoline quin 25.4 41 0.001 13.7 1.6 33 115-147 62-94 (375)
98 PRK12414 putative aminotransfe 24.9 45 0.0011 13.5 6.0 48 320-367 272-321 (384)
99 COG2875 CobM Precorrin-4 methy 24.6 33 0.00083 14.4 1.0 50 235-287 103-164 (254)
100 TIGR01274 ACC_deam 1-aminocycl 24.6 24 0.00061 15.2 0.3 47 320-367 288-335 (352)
101 PRK08248 O-acetylhomoserine am 24.5 46 0.0012 13.4 5.1 16 135-150 119-134 (431)
102 PRK06234 methionine gamma-lyas 24.3 46 0.0012 13.4 4.8 18 133-150 117-134 (399)
103 PRK09479 glpX fructose 1,6-bis 23.7 47 0.0012 13.3 5.4 33 259-291 155-187 (320)
104 pfam00591 Glycos_transf_3 Glyc 23.4 43 0.0011 13.6 1.4 19 197-215 123-141 (254)
105 TIGR03278 methan_mark_10 putat 23.4 48 0.0012 13.3 2.5 28 119-146 76-104 (404)
106 PRK08045 cystathionine gamma-s 23.0 49 0.0012 13.2 5.7 22 5-26 9-33 (386)
107 PRK03822 lplA lipoate-protein 22.5 50 0.0013 13.2 2.6 29 131-160 100-128 (338)
108 PTZ00075 S-adenosyl-L-homocyst 22.4 50 0.0013 13.2 2.7 31 39-69 46-77 (476)
109 TIGR02081 metW methionine bios 22.0 40 0.001 13.8 1.0 62 299-373 45-139 (205)
110 COG4825 Uncharacterized membra 21.3 53 0.0013 13.0 2.6 33 300-336 263-297 (395)
111 COG4771 FepA Outer membrane re 21.3 51 0.0013 13.1 1.4 13 53-65 70-83 (699)
112 TIGR02704 carboxysome_B carbox 21.0 30 0.00077 14.6 0.2 17 11-27 9-25 (80)
113 PRK07568 aspartate aminotransf 20.6 55 0.0014 12.9 7.5 48 320-367 272-323 (396)
No 1
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=100.00 E-value=0 Score=856.28 Aligned_cols=417 Identities=54% Similarity=0.879 Sum_probs=398.9
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|+||+|+|+++|+|+|++|||||+++|+|+||+|++|+|+|+|+|+++|+++|+++||+||++|+++++. .
T Consensus 1 M~~~~I~g~~~L~G~V~vpGsKs~~~~~l~AalLa~G~s~i~n~~~~~D~~~t~~~l~~LG~~i~~~~~~---------~ 71 (417)
T PRK09369 1 MDKLVIEGGKPLSGEVKISGAKNAALPILAASLLADEPVTLTNVPDLSDVETMIELLRSLGAKVERDEGG---------T 71 (417)
T ss_pred CCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCC---------E
T ss_conf 9769995889716799888848999999999986699399926998589999999999779989985898---------8
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 99943666586444023431132110225332333210453058663332012123433321033224568614899950
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS 160 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g 160 (430)
+.+.+........+.++++++|+|++|++||+++++++.++++|||+|++|||++|+++|++|||+|++++|++|+.+.+
T Consensus 72 ~~i~~~~~~~~~~~~~~~~~~R~sil~lg~Llar~g~~~~~~~Gg~~lg~RPm~~~~~~L~~lGA~i~~~~g~~~~~~~~ 151 (417)
T PRK09369 72 LTIDASNINNTEAPYELVKKMRASILVLGPLLARFGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEHGYVKAKAAG 151 (417)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCEEEEECC
T ss_conf 99978987778699678631236588778888416944995379874468872899988974883995148947999788
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEE
Q ss_conf 24433333334346661135665044446873323322201599899875014544320244321202554222234200
Q gi|254780927|r 161 KGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 (430)
Q Consensus 161 ~~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V 240 (430)
+|+|++|++|++|+|+||++||||++|+|+|+|+|+++|||+++|++||++||++|++.++++|+|+|+++|++++|+|
T Consensus 152 -~L~g~~i~l~~~S~~~t~~lLlAa~~A~G~T~I~n~~~ePei~~t~~mL~~~G~~I~~~~~~~i~I~G~~~l~~~~~~V 230 (417)
T PRK09369 152 -RLKGAHIVLDFPSVGATENILMAAVLAEGTTVIENAAREPEIVDLANFLNKMGAKISGAGTDTITIEGVERLHGAEHRV 230 (417)
T ss_pred -CCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCCCEEEC
T ss_conf -8767623357687457778997776458960245567786199999999977984782599659995876555723345
Q ss_pred CCCCHHCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 14310000100000124442010023456421046889752674367445126753267643157621535666421013
Q gi|254780927|r 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQA 320 (430)
Q Consensus 241 ~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p 320 (430)
|||+|||+||++||++++|+|+|+|+++++++.|+++|++||+++++.+++++|...+ +++++++++.|||||++|++|
T Consensus 231 ~gD~ssAa~fl~Aaaitgg~v~i~~v~~~~~~~~l~vL~~MGa~i~~~~~~i~v~~~~-~l~~i~i~~~~~Pg~~tD~~p 309 (417)
T PRK09369 231 IPDRIEAGTFLVAAAITGGDITIRGARPEHLEAVLAKLREAGAEIEEGEDGIRVDMPG-RLKAVDIKTAPYPGFPTDMQA 309 (417)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCEEEEECCC-CCCCEEEECCCCCCCCCCHHH
T ss_conf 8777899999999998399189947864675899999997699899809999996278-744126866758997230688
Q ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 46676313566416732046567566788974885899978969998889851015660818999999999985498199
Q gi|254780927|r 321 QFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETE 400 (430)
Q Consensus 321 ~la~laa~A~G~s~I~e~i~e~R~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa~~ia~L~a~g~~~ 400 (430)
+|+++||+|+|+|+|+|++||+|+++++||+||||+|++++|+++|+|+.+|+|++|+++|||+||||+||||.++|+|+
T Consensus 310 ~l~vla~~A~G~t~I~e~i~e~R~~~~~eL~kmGa~i~~~~d~~~I~G~~~L~ga~v~s~DhRiamal~iAaL~a~g~t~ 389 (417)
T PRK09369 310 QFMALLTQAEGTSVITETIFENRFMHVPELIRMGADIEVEGNTAIVRGVEKLSGAPVMATDLRASAALVLAGLVAEGETI 389 (417)
T ss_pred HHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999970788449998762567667999997799799989999998999747875615708999999999974899199
Q ss_pred EECCCEECCCCCCHHHHHHHCCCEEEEE
Q ss_conf 9243301177848788998669789995
Q gi|254780927|r 401 ISRVYHLDRGFECLEKKLSRCGALIQRI 428 (430)
Q Consensus 401 I~~~~~i~ksyp~f~~~L~~LGa~Ie~i 428 (430)
|+|++||+|||||||++|++|||+||+|
T Consensus 390 I~~~~~i~rsYp~f~~~L~~LGa~Ie~i 417 (417)
T PRK09369 390 VDRIYHLDRGYERIEEKLRALGADIERV 417 (417)
T ss_pred ECCEEEEECCCHHHHHHHHHCCCEEEEC
T ss_conf 9573567577354899999679889969
No 2
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro: IPR005750 The bacterial enzyme UDP-N-acetylglucosamine (UDP-GlcNAc) enolpyruvyltransferase (MurA) catalyzes the transfer of enolpyruvate from phosphoenolpyruvate to uridine diphospho-N-acetylglucosamine, which is the first committed step of bacterial cell wall biosynthesis. Experimental evidence suggests that binding of substrates to the enzyme does not exclusively follow an ordered mechanism with UDP-GlcNAc binding first, although binding of UDP-GlcNAc to free enzyme is preferred and possibly influenced by pyruvate-P. The reaction thus appears to follow an induced-fit mechanism, in which the binding site for fosfomycin, and presumably also for pyruvate-P, is created by the interaction of free enzyme with the sugar nucleotide. ; GO: 0016740 transferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process.
Probab=100.00 E-value=0 Score=852.11 Aligned_cols=419 Identities=53% Similarity=0.856 Sum_probs=409.3
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|++|+|+|+.+|+|+|+|+|+||.++..|+||+||+++++|+|+|+..|+..|++.||.||++|+|++.+ ..
T Consensus 1 m~~~~v~Gg~~L~G~V~iSGAKNAALPi~~A~lL~~~~~~l~NvP~l~DV~~~~~lL~~lGa~v~~~~~n--------~~ 72 (443)
T TIGR01072 1 MEKLEVEGGKPLSGEVTISGAKNAALPIIAATLLASEEVTLKNVPDLSDVKTMLELLRNLGARVEFDNPN--------EE 72 (443)
T ss_pred CCEEEEEECCEEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCC--------EE
T ss_conf 9658999201333499995253567899887634899689975475111899999998569799985686--------58
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC-EEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 9994366658644402343113211022533233321-045305866333201212343332103322456861489995
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGY-ARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVS 159 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~-~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~ 159 (430)
+.++...+.....|++++++||+|+++|||||+||++ +.|++||||.||.||+|.|+++|++|||+|+.++|++.++..
T Consensus 73 ~~i~~~~~~~~~apy~~V~kmRASilvLGPLLaR~g~Ga~V~LPGGCaIG~RPvD~H~~gL~~lGA~i~~~~G~v~A~~~ 152 (443)
T TIGR01072 73 LEINTPNINKTEAPYELVRKMRASILVLGPLLARFGKGAKVSLPGGCAIGARPVDLHLKGLEALGAEITIEDGYVVASAE 152 (443)
T ss_pred EEEECCCCCCEECCHHHHHHHCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCEEEEEEC
T ss_conf 99955745521079799754040487762897626886372688887357997668899898559899981639999850
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC-CCCCCC
Q ss_conf 0244333333343466611356650444468733233222015998998750145443202443212025542-222342
Q gi|254780927|r 160 SKGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTS-LSGTRH 238 (430)
Q Consensus 160 g~~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~-l~~~~~ 238 (430)
+++|+|.+|.+|++||++|.|+||||.+|+|+|+|+|++.||+|+|||.||++||++|++.|+++|+|+|+++ |++++|
T Consensus 153 ~~~L~G~~i~lD~~SVGATEN~~mAA~LAeG~Tvi~NaA~EPEivDL~~~L~~mGA~I~G~G~~~i~I~GV~~~L~g~~h 232 (443)
T TIGR01072 153 GGRLKGAHIVLDKVSVGATENIIMAAVLAEGTTVIENAAREPEIVDLCEFLNKMGAKIEGAGSSTITIEGVEKDLHGTEH 232 (443)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCEEE
T ss_conf 89622158982476564789988988526984699971488518999999985797896535878899854055775317
Q ss_pred EECCCCHHCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECC-------CCCCEEEEECCCC
Q ss_conf 001431000010000012444201002345642104688975267436744512675326-------7643157621535
Q gi|254780927|r 239 RILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNG-------EKLRPVDVITAPF 311 (430)
Q Consensus 239 ~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~-------~~l~~~di~~~~~ 311 (430)
+|.||+++|+||++|||+|+|+|.|+|+.+++++.+++.|++||++++..+++|+|.... ..++++||++.||
T Consensus 233 ~iiPDRIEAGTf~~AAA~T~G~~~~~~v~p~hL~~~~~KL~e~G~~~~~~~~~~~v~~~~~L~V~~D~~~k~v~i~T~py 312 (443)
T TIGR01072 233 SIIPDRIEAGTFLVAAAITRGEVLVKNVDPDHLRAVLAKLREIGAEVEVDENSIRVDMRQDLKVKLDKRLKAVDIETLPY 312 (443)
T ss_pred EECCCHHHHHHHHEEEEEECCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCEEEEECCCCCCEEECCCCC
T ss_conf 88386567866530023365817994578789999999998649679997788999855862797558888804237888
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEE--------------CCEEEEECCCCCEEEEE
Q ss_conf 6664210134667631356641673204656756678897488589997--------------89699988898510156
Q gi|254780927|r 312 PGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS--------------GQTARVEGVQGLRGAPV 377 (430)
Q Consensus 312 pg~~~D~~p~la~laa~A~G~s~I~e~i~e~R~~~~~eL~klG~~v~~~--------------~d~l~I~G~~~l~g~~v 377 (430)
|||||||||++++|+++|+|+|.|+|+||||||.|++||+||||+|+.+ ++...|+|++.|+|++|
T Consensus 313 PGFPTDlQaqf~aLl~~a~G~SvI~EtvFEnRf~Hv~EL~RMGA~I~~~d~CLS~KCRY~GN~Gn~A~i~G~~~L~Ga~V 392 (443)
T TIGR01072 313 PGFPTDLQAQFMALLSQAEGTSVITETVFENRFMHVDELIRMGADIKLEDECLSAKCRYIGNFGNTAVIQGVEQLSGAEV 392 (443)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCEECCCCCEEEEECCCCCCCCEE
T ss_conf 98887356999999854685179953775224566689830798089962632410300047885789968853445502
Q ss_pred EECCHHHHHHHHHHHHHCCC-EEEEECCCEECCCCCCHHHHHHHCCCEEEE
Q ss_conf 60818999999999985498-199924330117784878899866978999
Q gi|254780927|r 378 MATDLRASVSLVIAALAAQG-ETEISRVYHLDRGFECLEKKLSRCGALIQR 427 (430)
Q Consensus 378 ~~~DHRiaMa~~ia~L~a~g-~~~I~~~~~i~ksyp~f~~~L~~LGa~Ie~ 427 (430)
.++|.|+.|||.||||.|+| .|+|+|.+|++|||++|.++|++|||+|||
T Consensus 393 ~atDLRAg~aLvlAGL~A~GG~T~v~~~~HlDRGYe~l~~KL~~LGAkI~r 443 (443)
T TIGR01072 393 MATDLRAGAALVLAGLVAEGGETIVHNVYHLDRGYEDLEEKLRALGAKIER 443 (443)
T ss_pred EECHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHCCCEEEC
T ss_conf 521345779999998700799318801487137735799999736836609
No 3
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=100.00 E-value=0 Score=803.56 Aligned_cols=417 Identities=41% Similarity=0.668 Sum_probs=393.1
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|+||+|+|+++|+|+|++|||||++||+|++|+|++|+|+|+|+|+++|+.+|+++|++||++|+++++.
T Consensus 1 M~kl~I~g~~~L~G~v~vpgsKS~~~r~l~aa~La~g~s~I~n~~~s~D~~~t~~~l~~lG~~i~~~~~~---------- 70 (417)
T PRK12830 1 MEKIIINGGKPLNGEVTISGAKNSAVALIPAAILADGIVTLDGVPDISDVHSLVDILEELGGKVKRDGDT---------- 70 (417)
T ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCE----------
T ss_conf 9769996989627799898858999999999986699499926997789999999999779989997999----------
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 99943666586444023431132110225332333210453058663332012123433321033224568614899950
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS 160 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g 160 (430)
+.+.+........+...+.++|++++|+++++++++++.++++|||+|++|||++|+++|++|||+|+.++++++++ +
T Consensus 71 ~~I~~~g~~~~~~~~~~~~~~r~s~~l~g~ll~~~~~~~~~l~G~~sL~~RPm~~~~~~L~~lGa~i~~~~~~~~i~--~ 148 (417)
T PRK12830 71 LEIDPTGIQSMPLPNGKVKSLRASYYFMGALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNEHGAMYLR--A 148 (417)
T ss_pred EEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEECC--C
T ss_conf 99978886777588225533622688888876215808995278721168977999999997697899778840014--7
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEE
Q ss_conf 24433333334346661135665044446873323322201599899875014544320244321202554222234200
Q gi|254780927|r 161 KGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 (430)
Q Consensus 161 ~~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V 240 (430)
++++|++|.+|.+|+|+++++||||++++|.|+|+|++++||+.+|++||+.||++|++.+++.++|+|++.|++++|+|
T Consensus 149 ~~l~g~~~~~~~~S~~~~~~lllaa~~a~G~tvi~~~~~~p~v~~~~~~L~~~G~~I~~~g~~~i~i~g~~~l~~~~~~V 228 (417)
T PRK12830 149 DELKGAHIYLDVVSVGATINIMLAAVKAKGRTVIENAAKEPEIIDVATLLNNMGANIKGAGTDVIRIEGVEELHGCRHQV 228 (417)
T ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCEEEE
T ss_conf 88667469766777889999998765238973245556797179999999976984442697189993522444760230
Q ss_pred CCCCHHCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 14310000100000124442010023456421046889752674367445126753267643157621535666421013
Q gi|254780927|r 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQA 320 (430)
Q Consensus 241 ~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p 320 (430)
+||++||++|++||++++|+|+|+|+.+++.+.|+++|++|||++++.+++++|.+. .++++++++++++|++++|++|
T Consensus 229 ~pD~~saa~f~~aaa~~~~~v~i~nv~~~~~~~~l~~L~~MGa~i~~~~~~i~v~~~-~~L~~i~i~~~~~P~~~~Dl~p 307 (417)
T PRK12830 229 IPDRIEAGTYMILAAACGGGVIINNVIPEHLESFIAKLEEMGVRVEVEDDSIFVEGQ-EPLKAVDIKTLPYPGFATDLQQ 307 (417)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCEEEEECC-CCCCCEEEECCCCCCCCCCHHH
T ss_conf 687066899999999829947996778324178999999769879981998999138-9855278625789898752256
Q ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 46676313566416732046567566788974885899978969998889851015660818999999999985498199
Q gi|254780927|r 321 QFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETE 400 (430)
Q Consensus 321 ~la~laa~A~G~s~I~e~i~e~R~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa~~ia~L~a~g~~~ 400 (430)
++++++|+|+|+|+|++++||+|+++++||+|||+++++++|+++|+|+.+++|++++++|||+||||++|||.++|+++
T Consensus 308 ~l~~la~~A~G~t~i~~~v~e~R~ke~deL~kmGa~i~~~~d~~~I~G~~~l~G~~v~s~DHRiaMa~~ia~L~a~g~t~ 387 (417)
T PRK12830 308 PLTPLLLKANGRSVVTDTIYEKRFKHVDELKRMGANIKVEGRSAIITGPSKLTGAKVKATDLRAGAALVIAGLMAEGVTE 387 (417)
T ss_pred HHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 78999982787469995012546676899996789399989999997998774862668858999999999974898099
Q ss_pred EECCCEECCCCCCHHHHHHHCCCEEEEECC
Q ss_conf 924330117784878899866978999519
Q gi|254780927|r 401 ISRVYHLDRGFECLEKKLSRCGALIQRIKG 430 (430)
Q Consensus 401 I~~~~~i~ksyp~f~~~L~~LGa~Ie~i~~ 430 (430)
|+|++||+||||+||++|++|||+|||+|-
T Consensus 388 I~~~~~i~~SyP~F~~~L~~LGa~Ier~~~ 417 (417)
T PRK12830 388 ITNIEHIDRGYSNIIEKLKALGADIWREED 417 (417)
T ss_pred ECCCCEEECCCHHHHHHHHHCCCEEEEECC
T ss_conf 867222668704199999967997999249
No 4
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=100.00 E-value=0 Score=793.85 Aligned_cols=400 Identities=54% Similarity=0.859 Sum_probs=379.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCC
Q ss_conf 13789769646689999999974699699986983699999999999749899992774114202452599943666586
Q gi|254780927|r 12 LNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDL 91 (430)
Q Consensus 12 L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (430)
|+|+|++|||||++||+|+||+|++|+|+|+|+|+|+|+++|+++||+||++|+++++.. +.+.+......
T Consensus 1 L~G~i~vpgsKS~s~R~l~~aaLa~g~s~I~n~l~s~D~~~ti~~l~~LG~~i~~~~~~~---------~~i~~~~~~~~ 71 (400)
T cd01555 1 LSGEVRISGAKNAALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGENT---------LVIDASNINST 71 (400)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCE---------EEEECCCCCCC
T ss_conf 937998987499999999999867994999668925999999999997799899927988---------99968988778
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 44402343113211022533233321045305866333201212343332103322456861489995024433333334
Q gi|254780927|r 92 TGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFP 171 (430)
Q Consensus 92 ~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g~~i~l~ 171 (430)
..+..+++++|+++||+++++++++++.++++|||||++|||++|+++|++|||+|+.++|++|+...+ +++|++|.+|
T Consensus 72 ~~~~~~~~~~~~s~lllg~l~a~~~~~~~~~~G~~sL~~RPm~~li~~L~~lGa~i~~~~~~~~~~~~~-~l~g~~i~~~ 150 (400)
T cd01555 72 EAPYELVRKMRASILVLGPLLARFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIEDGYVEAKAAG-RLKGARIYLD 150 (400)
T ss_pred CCCHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCEEEECCC-CCCCCEEECC
T ss_conf 797577565318999999998466973697338853278970899999997466103047978884279-8536369766
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCHHCCHHH
Q ss_conf 34666113566504444687332332220159989987501454432024432120255422223420014310000100
Q gi|254780927|r 172 KVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEAGTYA 251 (430)
Q Consensus 172 ~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~ssAa~fl 251 (430)
.+|+|++|++||||++++|+|+|+|++++||+++|++||++||++|+..++++|+|+|+|+|++++|+||||||||+||+
T Consensus 151 ~~S~~~~s~lLlaa~~a~G~t~I~~~~~~P~i~~t~~~L~~~G~~i~~~~~~~i~I~g~~~l~~~~~~V~~D~SsAa~f~ 230 (400)
T cd01555 151 FPSVGATENIMMAAVLAEGTTVIENAAREPEIVDLANFLNKMGAKIEGAGTDTIRIEGVERLHGAEHTVIPDRIEAGTFL 230 (400)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCCEECCCCHHHHHHHH
T ss_conf 76688889999765523897334557888609999999997598625459988997788755576113277667899999
Q ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 00012444201002345642104688975267436744512675326764315762153566642101346676313566
Q gi|254780927|r 252 MAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAG 331 (430)
Q Consensus 252 ~Aaalt~g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p~la~laa~A~G 331 (430)
+||++++|+|+|+|++++++|.++++|++|||+|++.+++++|...+.++.+++++++|+|++++|++|+|+++||||+|
T Consensus 231 ~aaai~gg~i~i~nv~~~~~~~~~~iL~~MGa~i~~~~~~i~i~~~~~~l~~i~i~~~~~P~~~~D~~P~lavla~~A~G 310 (400)
T cd01555 231 VAAAITGGDITVENVIPEHLEAVLAKLREMGAKIEIGEDGIRVDGDGGRLKAVDIETAPYPGFPTDLQAQFMALLTQAEG 310 (400)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99997499189957873030899999996899899818989998368877751035776888843268899999983888
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCEECCCC
Q ss_conf 41673204656756678897488589997896999888985101566081899999999998549819992433011778
Q gi|254780927|r 332 ISHITETIFENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGF 411 (430)
Q Consensus 332 ~s~I~e~i~e~R~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksy 411 (430)
+|+|+|++||+|+++++||+|||+++++++|+++|+|+++++|+.++++||||||||+||||.++|+++|+|++||+|||
T Consensus 311 ~t~i~e~v~e~R~~~~~eL~klG~~i~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa~aia~L~a~g~~~I~~~~~i~~Sy 390 (400)
T cd01555 311 TSVITETIFENRFMHVDELNRMGADIKVEGNTAIIRGVTKLSGAPVMATDLRAGAALVLAGLAAEGETIISNIYHIDRGY 390 (400)
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHCCCCCEEECCEEEEECCC
T ss_conf 44999743476888899999769969998998999799876376136781899999999998289938986701575775
Q ss_pred CCHHHHHHHC
Q ss_conf 4878899866
Q gi|254780927|r 412 ECLEKKLSRC 421 (430)
Q Consensus 412 p~f~~~L~~L 421 (430)
||||+||++|
T Consensus 391 P~F~e~L~~L 400 (400)
T cd01555 391 ERIEEKLRAL 400 (400)
T ss_pred CCHHHHHHCC
T ss_conf 1189998539
No 5
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=747.97 Aligned_cols=420 Identities=55% Similarity=0.896 Sum_probs=410.2
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|+|++|+|+.+|+|+|+++|+||.+++.|+|++|++++++|+|+|+..|+..|++.|+.||++|++++ ...
T Consensus 1 M~k~~I~Gg~~L~G~V~IsGAKNaalpii~AtlLa~~~v~L~NvP~l~DV~~~~~ll~~lG~~v~~~~---------~~~ 71 (421)
T COG0766 1 MDKLIIEGGNPLNGEVTISGAKNAALPLLAATLLADEPVTLTNVPDLSDVETMLELLRNLGAKVERDG---------DGE 71 (421)
T ss_pred CCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEECC---------CCE
T ss_conf 97799967983313899841176788999999827996798079972789999999997197799826---------826
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 99943666586444023431132110225332333210453058663332012123433321033224568614899950
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS 160 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g 160 (430)
+.+.++.+.....|+++++.||+|++++||||+|||+++|.+||||.++.||+|.|+.+|++|||+|+.++|++..+..+
T Consensus 72 ~~i~~~~i~~~~apy~~v~kmRASi~vlGplLaR~g~a~V~LPGGCaIG~RPvDlHl~gleaLGA~i~~e~g~i~a~a~~ 151 (421)
T COG0766 72 LEIDAPNINSTEAPYELVRKMRASILVLGPLLARFGKAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEHGYIEASAPK 151 (421)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCC
T ss_conf 99716532456699899987774999887888534956878898766788744579999997699899728889997468
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEE
Q ss_conf 24433333334346661135665044446873323322201599899875014544320244321202554222234200
Q gi|254780927|r 161 KGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 (430)
Q Consensus 161 ~~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V 240 (430)
+ |+|.+|.+|++|+++|.++||||.+|+|+|+|+|++.||+|+|++++|++||++|++.|+++|+|+|++++++++|+|
T Consensus 152 ~-L~G~~I~ld~~SVGATenimmAA~lA~G~TvIeNAA~EPEIvDLa~~Ln~MGA~I~GaGT~~I~I~GV~~L~g~~h~V 230 (421)
T COG0766 152 G-LKGAHIYLDKVSVGATENIMMAAVLAEGTTVIENAAREPEIVDLANFLNKMGAKIEGAGTSTITIEGVEKLHGAEHSV 230 (421)
T ss_pred C-CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCCEEEE
T ss_conf 7-300189906875558899999998669848982025682589999999974882687687739996604556705663
Q ss_pred CCCCHHCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 14310000100000124442010023456421046889752674367445126753267643157621535666421013
Q gi|254780927|r 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQA 320 (430)
Q Consensus 241 ~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p 320 (430)
.||+++|++|++|||+++|+|+++|+.+++++.+++.|++||++++..+++++|..+..+++++|+.+.|||||+||+|+
T Consensus 231 ipDRIEAGT~~~aaA~tgg~v~i~~v~~~hl~~~~~kL~e~G~~~~~~~~~i~v~~~~~~~k~v~i~T~p~PGFpTDmQa 310 (421)
T COG0766 231 IPDRIEAGTFLVAAAITGGDVTIENVRPEHLEAVLAKLREAGVDIEEGEDGIRVDMEGKRLKAVDIKTLPYPGFPTDMQA 310 (421)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCCCCEECCCCCCCCCHHHHH
T ss_conf 57331387999999994894799078989999999999984980796288599965677788623305899999603789
Q ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 46676313566416732046567566788974885899978969998889851015660818999999999985498199
Q gi|254780927|r 321 QFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETE 400 (430)
Q Consensus 321 ~la~laa~A~G~s~I~e~i~e~R~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa~~ia~L~a~g~~~ 400 (430)
++++|++.|+|+|+|+|+||||||.|++||.|||++++.+++..+|+|+++|+|++|.++|.|..||+.+|||.|+|+|+
T Consensus 311 qf~~L~~~a~G~s~I~EtifEnRf~hv~EL~RmGA~i~~~g~~a~i~G~~~L~ga~V~atDLRAsaaLVlAgLvAeG~T~ 390 (421)
T COG0766 311 QFMALLTVAEGTSVITETIFENRFMHVPELIRMGANIKLEGNTAVIQGVEQLSGAPVMATDLRASAALVLAGLVAEGETI 390 (421)
T ss_pred HHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHCCEEE
T ss_conf 99999865678469987431655430899986689639978879997876444772451303538999999985188189
Q ss_pred EECCCEECCCCCCHHHHHHHCCCEEEEECC
Q ss_conf 924330117784878899866978999519
Q gi|254780927|r 401 ISRVYHLDRGFECLEKKLSRCGALIQRIKG 430 (430)
Q Consensus 401 I~~~~~i~ksyp~f~~~L~~LGa~Ie~i~~ 430 (430)
|+|.+|++|+|++|.++|++|||+||++++
T Consensus 391 I~~v~hldRGYe~~~~KL~~lGA~I~r~~~ 420 (421)
T COG0766 391 VNRVYHLDRGYERLEEKLRALGAKIERVEG 420 (421)
T ss_pred EEEEEEEECCHHHHHHHHHHCCCCEEEECC
T ss_conf 900898406756899999976981798248
No 6
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro: IPR006264 These sequences represent 5-enolpyruvyl shikimate-3-phosphate synthase (EPSP_synthase) (3-phosphoshikimate-1-carboxyvinyltransferase,aroA), which catalyzes the sixth of seven steps in the shikimate pathway of the biosynthesis of chorimate. Chorismate is last common precursor of all three aromatic amino acids. ; GO: 0003866 3-phosphoshikimate 1-carboxyvinyltransferase activity.
Probab=100.00 E-value=0 Score=726.14 Aligned_cols=399 Identities=22% Similarity=0.303 Sum_probs=343.6
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEC-CCCEEEECCCCEEEEECCCCCCCC
Q ss_conf 7897696466899999999746996999869836999999999997498999927-741142024525999436665864
Q gi|254780927|r 14 GTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDS-SYNDQNKSYSSTMHFRCRHIVDLT 92 (430)
Q Consensus 14 G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 92 (430)
|+|++|||||+|||+|++|+||+|+|+|+|++.|+||.+|+++||+||++|+++. .+.....+..+.+.. +..
T Consensus 1 G~~~~PgSKS~thRal~laaLA~G~t~v~n~L~S~Dt~~~~~al~~LG~~~~~~~~~~~~~i~G~~g~l~~-P~~----- 74 (444)
T TIGR01356 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKVEVRGEGEEVVIEGVGGTLKE-PQS----- 74 (444)
T ss_pred CEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCC-CCC-----
T ss_conf 93731898668999999985169847996155556899999999971986999848877986257874679-873-----
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCCEEEEEECC-CCC--CCC
Q ss_conf 4402343113211022533233321045305866333201212343332103322456--86148999502-443--333
Q gi|254780927|r 93 GSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKID--GGYVDARVSSK-GLR--GTS 167 (430)
Q Consensus 93 ~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~--~g~~p~~i~g~-~l~--g~~ 167 (430)
....|+|+||++||+.+++|... ..+.++||+||++|||+++++||++|||+|.+. +|++|++|.|+ +.. |..
T Consensus 75 -~~l~~gNsGT~~R~l~g~la~~~-~~~vl~Gd~SL~~RP~~~l~~aL~~lGa~i~~~~~~g~~Pl~i~G~~~~~~~g~v 152 (444)
T TIGR01356 75 -AELDLGNSGTTARLLTGVLALAS-GEVVLTGDESLRKRPMGRLVDALRQLGAEISSREGGGSLPLTISGPNGLRGKGIV 152 (444)
T ss_pred -CEEECCCHHHHHHHHHHHHHHCC-CCEEEECCCHHCCCCCHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCCCCEE
T ss_conf -23624462789999999998539-6189953610200887046799875695997607899545788888887776128
Q ss_pred CCCCCCCCCCEEEEEEECCC---CCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCCCC-CCEEECCCCC-CCCC-CCEE
Q ss_conf 33343466611356650444---46873323-322201599899875014544320244-3212025542-2223-4200
Q gi|254780927|r 168 YTFPKVSVGATQVMMMVASL---SHGDTSIY-NAAREPEVVDLAHCLNSMGAKISGMGS-STITIQGVTS-LSGT-RHRI 240 (430)
Q Consensus 168 i~l~~~S~q~~s~lLlaA~~---a~G~t~I~-~~~~~P~i~~t~~~L~~~Gv~I~~~~~-~~i~I~g~~~-l~~~-~~~V 240 (430)
+..+..|+||+|+|||||+. +.+.+++. ...|.||+++|+++|..|||+|+..++ ++|+|+|.|+ +.+. +|.|
T Consensus 153 ~~~~~~SSQ~~SaLl~aap~~~~~~~~~~~~~~~~Sr~y~e~TL~~l~~fGv~~~~~~~~~~~~v~g~~~L~~~~g~~~v 232 (444)
T TIGR01356 153 YISGSASSQYKSALLLAAPLALQAVGITIVGEPLKSRPYIEITLDLLGSFGVSVEREDDLRKIVVPGGQKLYGPPGDYDV 232 (444)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCEEEEEECCCCEEECCCCCEEE
T ss_conf 98785362699999998431688855788235557577389998987426807899625017998899647658985696
Q ss_pred CCCCHHCCHHHHHCCCCCC-CEEEECCCCCCCCC---HHH-HHHHCCCCEEEECC--------CEEEEEC--CCCCCEEE
Q ss_conf 1431000010000012444-20100234564210---468-89752674367445--------1267532--67643157
Q gi|254780927|r 241 LPDRIEAGTYAMAVAMTGG-DVILKMTDSSLLKT---VFK-VMRQTGVDIDIIDE--------GIRVRWN--GEKLRPVD 305 (430)
Q Consensus 241 ~~D~ssAa~fl~Aaalt~g-~i~i~n~~~~~~~~---~l~-iL~~mGa~i~~~~~--------~i~V~~~--~~~l~~~d 305 (430)
|||+|||+||++||||+++ +|+|+|+..+++|. |+. +|++|||+|+|.++ .|+|+.. ...+++++
T Consensus 233 pGD~SSA~fflaaaal~~~s~v~~~n~~~~~~q~d~~~~~~vL~~MGa~i~~~~~~~~~E~~~~~~V~~vr~~~~lkg~~ 312 (444)
T TIGR01356 233 PGDYSSAAFFLAAAALTGGSRVTVENLGENSTQGDKAIIIEVLEEMGADIEVEKQREDLEPVADVEVEGVRQASGLKGIK 312 (444)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEEECCCCCCCCCEE
T ss_conf 48834678999998625897079834658895431799999998639869994452345505799984131078888512
Q ss_pred ---EECCCCCCCCCCCHHHHHHHHHCCCCCEEEEE----ECCH-HHHHHH-HHHHHCCCEEEEECCEEEEECC------C
Q ss_conf ---62153566642101346676313566416732----0465-675667-8897488589997896999888------9
Q gi|254780927|r 306 ---VITAPFPGFPTDLQAQFMAMMCCAAGISHITE----TIFE-NRFMHV-QELVRLGARISLSGQTARVEGV------Q 370 (430)
Q Consensus 306 ---i~~~~~pg~~~D~~p~la~laa~A~G~s~I~e----~i~e-~R~~~~-~eL~klG~~v~~~~d~l~I~G~------~ 370 (430)
++...+| |++|++|+|||||+|+|+|++ |+|| ||++.+ .||+|||++|+|.+|+|+|+|+ .
T Consensus 313 v~~~d~~~~~----D~~p~lA~la~fA~G~t~i~~~~~lR~KEsDRi~A~~~~L~klG~~~~E~~Dgl~I~G~~D~~~~~ 388 (444)
T TIGR01356 313 VPDIDMDDMI----DLLPTLAVLAAFAEGPTRITGAEELRVKESDRIAAIAEELRKLGVEVEEFEDGLYIRGGKDITRKK 388 (444)
T ss_pred ECCCCCCCCH----HHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCC
T ss_conf 3677766400----089999999863799539931110221233248999999985693788506478996588887776
Q ss_pred CCEEEEEEEC-CHHHHHHHHHHHHHCC-CEEEEECCCEECCCCCCHHHHHHHCCCE
Q ss_conf 8510156608-1899999999998549-8199924330117784878899866978
Q gi|254780927|r 371 GLRGAPVMAT-DLRASVSLVIAALAAQ-GETEISRVYHLDRGFECLEKKLSRCGAL 424 (430)
Q Consensus 371 ~l~g~~v~~~-DHRiaMa~~ia~L~a~-g~~~I~~~~~i~ksyp~f~~~L~~LGa~ 424 (430)
.|+|+.++++ ||||||||+||||.++ |+++|+|.+||+||||+||++|++||++
T Consensus 389 ~l~g~~~~t~~DHRiAM~~avaGL~~~sg~~~i~d~~~v~kSfP~F~~~l~~l~~~ 444 (444)
T TIGR01356 389 ELKGAVVDTYGDHRIAMAFAVAGLVAESGEVRIDDPECVAKSFPSFFDVLERLGAN 444 (444)
T ss_pred CCCCCEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC
T ss_conf 54786542758748999998875120577668628740413580289999998459
No 7
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=100.00 E-value=0 Score=697.33 Aligned_cols=407 Identities=19% Similarity=0.238 Sum_probs=350.9
Q ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEE
Q ss_conf 38982797313789769646689999999974699699986983699999999999749899992774114202452599
Q gi|254780927|r 3 RIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMH 82 (430)
Q Consensus 3 ~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~ 82 (430)
-|+|.|...++|+|++|||||+|||+|++|+||+|+|+|+|++.|+|+++|+++|++||++|+.+++...+.+.+ ....
T Consensus 6 ~~~~~p~~~~sG~I~vPgsKSiShRAlilaaLa~G~s~I~n~l~S~D~~ati~al~~LG~~I~~~~~~~~I~G~g-~~~~ 84 (662)
T PRK11860 6 FLDLPPLLAAGGTVRLPGSKSISNRVLLLAALSEGTTTVHDLLASDDTRVMLDALRQLGCGVEQAGDTVRITGLG-GQLP 84 (662)
T ss_pred CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECC-CCCC
T ss_conf 627899887887998889779999999999867998897778878799999999998699699659989999078-8878
Q ss_pred EECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEEEC
Q ss_conf 9436665864440234311321102253323332104530586633320121234333210332245--68614899950
Q gi|254780927|r 83 FRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVSS 160 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i~g 160 (430)
.+. ...+|+|+||++|||.++++.++. .+.++||.||++|||++++++|++|||+|++ ++|++|++|.+
T Consensus 85 -~~~-------~~l~~GnSGTt~RlL~glla~~~~-~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~~~g~~Pl~I~g 155 (662)
T PRK11860 85 -VKK-------ADLFLGNAGTAMRPLTAALALLGG-EFELSGVPRMHERPIGDLVDALRQLGCRIDYLGNEGFPPLRIRP 155 (662)
T ss_pred -CCC-------CEEECCCCHHHHHHHHHHHHCCCC-EEEEECCCCHHHCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEC
T ss_conf -998-------657737847899999999985998-39998763110097289999999879969982689976558847
Q ss_pred CCCC-CCCCCCCC-CCCCCEEEEEEECCCCC-CCC-CCC---CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 2443-33333343-46661135665044446-873-323---32220159989987501454432024432120255422
Q gi|254780927|r 161 KGLR-GTSYTFPK-VSVGATQVMMMVASLSH-GDT-SIY---NAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSL 233 (430)
Q Consensus 161 ~~l~-g~~i~l~~-~S~q~~s~lLlaA~~a~-G~t-~I~---~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l 233 (430)
.+++ ++.++++. .|+|++|++||||++.. |.+ +|+ +..++||+++|++||++||++|+..+.+.+.|++++.|
T Consensus 156 ~~~~~~g~i~i~~~~SSQ~iSaLLlaapl~~~g~~~~ie~~~~~~Srpy~e~Tl~~L~~fGi~v~~~~~~~~~i~~g~~~ 235 (662)
T PRK11860 156 ASLKLDAPIRVRGDVSSQFLTALLMALPLVAAGQDIVIEVVGELISKPYIEITLNLLARFGIAVQREGWQRFTIPAGSRY 235 (662)
T ss_pred CCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCCC
T ss_conf 85368971452565068999999986265327983699848865887779999999997794799538808998089512
Q ss_pred -CCCCCEECCCCHHCCHHHHHCCCCCC---CEEEECCCCCCCC---CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEE
Q ss_conf -22342001431000010000012444---2010023456421---0468897526743674451267532676431576
Q gi|254780927|r 234 -SGTRHRILPDRIEAGTYAMAVAMTGG---DVILKMTDSSLLK---TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDV 306 (430)
Q Consensus 234 -~~~~~~V~~D~ssAa~fl~Aaalt~g---~i~i~n~~~~~~~---~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di 306 (430)
.+.+|+||||||||+||++||+++++ +|+++|++.+++| .|+++|++|||++++.++++.|..+...++++++
T Consensus 236 ~~~~~~~VpgD~SSAAfflaaaai~~~~~~~I~i~~v~~ns~qgd~~~l~iL~~MGa~i~~~~~~~~v~~~~~~L~gi~i 315 (662)
T PRK11860 236 RSPGTIHVEADASSASYFIALGAIAGGAQEGIRIEGVGADSIQGDIRFVEAARAMGARVTGGPNWLEVRRGAWPLKAIDL 315 (662)
T ss_pred CCCCCEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCEEEEECCCCCCCEEEE
T ss_conf 58860576898117899999999718998807981688888755379999999869979905975999505767632764
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCCCCEEEEE----ECCH-HHHHHH-HHHHHCCCEEEEECCEEEEECCCCCEEEEEEEC
Q ss_conf 2153566642101346676313566416732----0465-675667-889748858999789699988898510156608
Q gi|254780927|r 307 ITAPFPGFPTDLQAQFMAMMCCAAGISHITE----TIFE-NRFMHV-QELVRLGARISLSGQTARVEGVQGLRGAPVMAT 380 (430)
Q Consensus 307 ~~~~~pg~~~D~~p~la~laa~A~G~s~I~e----~i~e-~R~~~~-~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~ 380 (430)
+...+| |++|+|+++||||+|+|+|++ +++| ||+..+ .||+|||++|++.+|+++|+|+..++|+.|+++
T Consensus 316 d~~~iP----D~~PiLavlAa~A~G~T~i~g~~~LR~KESDRI~am~~eL~klGv~v~e~~Dgl~I~g~~~l~g~~i~s~ 391 (662)
T PRK11860 316 DCNHIP----DAAMTLAVMALYADGTTTLRNIASWRVKETDRIAAMACELRKLGATVEEGADYIRVTPPADWKAAAIHTY 391 (662)
T ss_pred CHHHCC----CHHHHHHHHHHHCCCCEEEECHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCEECCC
T ss_conf 622187----0789999999858997166584786311057899999999974987997288799978887867654177
Q ss_pred -CHHHHHHHHHHHHH-CCCEEEEECCCEECCCCCCHHHHHHHCCC
Q ss_conf -18999999999985-49819992433011778487889986697
Q gi|254780927|r 381 -DLRASVSLVIAALA-AQGETEISRVYHLDRGFECLEKKLSRCGA 423 (430)
Q Consensus 381 -DHRiaMa~~ia~L~-a~g~~~I~~~~~i~ksyp~f~~~L~~LGa 423 (430)
||||||||++|||. ++.+++|+|++||+||||+||+||.++..
T Consensus 392 ~DHRIAMafavagL~~~~~~v~I~d~~cV~kSfP~Ffedl~~~~~ 436 (662)
T PRK11860 392 DDHRMAMCFSLAAFNPARLPVRILDPKCVAKTFPDYFEALFSVAQ 436 (662)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCHHHHHHHHHHH
T ss_conf 886999999999835689957984788336768429999999862
No 8
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=0 Score=689.35 Aligned_cols=406 Identities=20% Similarity=0.275 Sum_probs=345.5
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|.+++|+ +++|+|+|.+|||||++||+|++|+|++|+|+|+|+|+++|+.+|+++|++||++|+++++...+...+...
T Consensus 3 ~~~~~i~-ps~l~G~i~ipgSKs~s~Rali~AaLa~g~s~i~n~~~~~Dv~~~~~~l~~lG~~i~~~~~~~~i~~~~~~~ 81 (424)
T PRK02427 3 LMLLPIS-PSPLKGTVRVPGSKSISHRALLLAALAEGETTITNLLDSEDTLATLEALRALGARIEEDGDELEVEGVGLGG 81 (424)
T ss_pred CEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCC
T ss_conf 5041232-898678997488289999999999976998999058903999999999998799899949999998278777
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCCEEEEE
Q ss_conf 9994366658644402343113211022533233321045305866333201212343332103322456--86148999
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKID--GGYVDARV 158 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~--~g~~p~~i 158 (430)
+. .....-.|+++++++||+.|+++..+ ..+.++|||+|++|||++|+++|++|||+|++. ++++|+++
T Consensus 82 ~~--------~~~~~i~~g~SGt~~R~l~~lla~~~-~~~~l~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~~lP~~i 152 (424)
T PRK02427 82 LK--------EPEAVLDCGNSGTTMRLLAGLLALQP-GEVVLTGDESLRKRPMGRLVDPLRQMGAKIEGREEGYRLPLTI 152 (424)
T ss_pred CC--------CCCCEEECCCCCCCHHHHHHHHHCCC-CEEEEECCHHHCCCCCHHHHHHHHHCCCEEEECCCCEEEEEEE
T ss_conf 66--------87220551466441776767752689-5699978701057871068999997799999657843543576
Q ss_pred ECCCCCCCCCC--CCCCCCCCEEEEEEECCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 50244333333--34346661135665044446873323-3222015998998750145443202443212025542222
Q gi|254780927|r 159 SSKGLRGTSYT--FPKVSVGATQVMMMVASLSHGDTSIY-NAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSG 235 (430)
Q Consensus 159 ~g~~l~g~~i~--l~~~S~q~~s~lLlaA~~a~G~t~I~-~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~ 235 (430)
.|+ .++..++ .+.+|+++++.+|+|+.+++|.|+|. +..++||+++|++||++||++|+..++++|+|+|++.|++
T Consensus 153 ~g~-~~~~~~~i~~~~sSq~vs~lll~A~l~~~g~t~i~~~~~s~pyi~~T~~~L~~~G~~I~~~~~~~i~I~g~~~l~~ 231 (424)
T PRK02427 153 RGP-KKGGPIEYDGPVSSQFVKSLLLLAPLAAEGTTIVIEPLPSRPHTEITLRMLRAFGVEVDDVDGRRFTVKGGQRLKG 231 (424)
T ss_pred ECC-CCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCC
T ss_conf 747-7776579922657575543455213227970798157677367999999998689649962881999778754466
Q ss_pred CCCEECCCCHHCCHHHHHCCCC-CCCEEEECCCCCCCC---CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCC
Q ss_conf 3420014310000100000124-442010023456421---046889752674367445126753267643157621535
Q gi|254780927|r 236 TRHRILPDRIEAGTYAMAVAMT-GGDVILKMTDSSLLK---TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPF 311 (430)
Q Consensus 236 ~~~~V~~D~ssAa~fl~Aaalt-~g~i~i~n~~~~~~~---~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~ 311 (430)
.+|+||||||+|+||++||+++ ||+|+|+|++.+++| .|+++|++|||++++.++++.+.....++++++++..++
T Consensus 232 ~~~~V~~D~s~A~~~l~aaal~~g~~i~i~~~~~~~~q~d~~~l~iL~~mGa~i~~~~~~~~~~~~~~~L~~i~id~~~~ 311 (424)
T PRK02427 232 PDITVPGDISSAAFFLAAAAITPGSEVTITNVGLNPTQGGKAILDVLEKMGADIEWGDDREEGEPVSGELKGIDIDIPDI 311 (424)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCEEECCCCC
T ss_conf 55769989889999999999758986999177766565518999999986998999478079975488876478338889
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEE----ECCH-HHHHH-HHHHHHCCCEEEEECCEEEEECCCCCEEEEEEE-CCHHH
Q ss_conf 66642101346676313566416732----0465-67566-788974885899978969998889851015660-81899
Q gi|254780927|r 312 PGFPTDLQAQFMAMMCCAAGISHITE----TIFE-NRFMH-VQELVRLGARISLSGQTARVEGVQGLRGAPVMA-TDLRA 384 (430)
Q Consensus 312 pg~~~D~~p~la~laa~A~G~s~I~e----~i~e-~R~~~-~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~-~DHRi 384 (430)
| |++|+++++||+|+|+|+|++ +.+| ||+.. +.||+|||+++++++|+++|+|+ ++|+++++ +|||+
T Consensus 312 p----Dl~p~la~la~~a~G~s~i~~i~~lR~KESdRi~~~~~eL~k~G~~i~~~~d~l~I~G~--~~g~~v~s~~DhRi 385 (424)
T PRK02427 312 I----DEAPTLAVLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVEETEDGLIITGP--LGGAVVDSYGDHRI 385 (424)
T ss_pred C----CHHHHHHHHHHHCCCCCEEECCHHHCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECC--CCCCEEECCCCHHH
T ss_conf 6----07899999998389983685213411401307999999999779989996996999788--98866768987899
Q ss_pred HHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHCCCE
Q ss_conf 9999999985498199924330117784878899866978
Q gi|254780927|r 385 SVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRCGAL 424 (430)
Q Consensus 385 aMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~LGa~ 424 (430)
||||++|||.++| ++|+|++||+||||+||++|++|||+
T Consensus 386 ama~~ia~l~~~g-~~I~~~~~v~ksyp~F~~~l~~LGA~ 424 (424)
T PRK02427 386 AMAFAIAGLLASP-VTIDDPECVAKSFPDFFELLASLGAN 424 (424)
T ss_pred HHHHHHHHHCCCC-EEEECCCEEECCCHHHHHHHHHCCCC
T ss_conf 9999999981799-79937553768655199999974999
No 9
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=687.03 Aligned_cols=403 Identities=23% Similarity=0.331 Sum_probs=343.8
Q ss_pred ECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECC
Q ss_conf 27973137897696466899999999746996999869836999999999997498999927741142024525999436
Q gi|254780927|r 7 IGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCR 86 (430)
Q Consensus 7 ~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~ 86 (430)
..+++++|+|++|||||+|||+|++|+||+|+|+|+|+++|+|+++|+++||+||++|++.++...+...+. .
T Consensus 8 ~~~~~l~G~v~~PgSKSishRalilaaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~~~~~v~g~g~--~----- 80 (428)
T COG0128 8 VKPSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRALGARIEKEGDTLVVRGTGG--E----- 80 (428)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCEEECCCCEEEEECCCC--C-----
T ss_conf 557765169978998238999999998728965994322568699999999970874885587799967988--7-----
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCCEEEEEECCCCC
Q ss_conf 6658644402343113211022533233321045305866333201212343332103322456--86148999502443
Q gi|254780927|r 87 HIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKID--GGYVDARVSSKGLR 164 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~--~g~~p~~i~g~~l~ 164 (430)
........+|+|++|++||+.++++....+.+.++||.||++|||++++++|++|||+|++. ++++|+.|+|+ ++
T Consensus 81 --~~~~~~~l~~GnSGTt~R~l~glla~~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~-~~ 157 (428)
T COG0128 81 --LKEPPAVLDCGNSGTTLRLLTGLLALGSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG-LK 157 (428)
T ss_pred --CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCEEEECC-CC
T ss_conf --579974456056265899999999617897099987832310976788999997796899468888678799778-77
Q ss_pred CCCCCCCC-CCCCCEEEEEEECCCC-CCCCCCC--CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEE
Q ss_conf 33333343-4666113566504444-6873323--322201599899875014544320244321202554222234200
Q gi|254780927|r 165 GTSYTFPK-VSVGATQVMMMVASLS-HGDTSIY--NAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 (430)
Q Consensus 165 g~~i~l~~-~S~q~~s~lLlaA~~a-~G~t~I~--~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V 240 (430)
++.+.++. .|+|+.+++||+|++. +|.+++. +..++||+++|++||++||++|+..++ +|+|+|+|++.+.+|.|
T Consensus 158 ~~~i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~-~~~i~~g~~~~~~~~~V 236 (428)
T COG0128 158 GGEVEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGY-RFYIPGGQKLTPGDYDV 236 (428)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECC-EEEECCCCCCCCCEEEC
T ss_conf 85289845650799999999876258983898457567766799999999986983896043-89988986216754782
Q ss_pred CCCCHHCCHHHHHCCCC-CCC-EEEECCCCCCCCC-HHHHHHHCCCCEEEECCCE-EEEECCCCCCEEEEECCCCCCCCC
Q ss_conf 14310000100000124-442-0100234564210-4688975267436744512-675326764315762153566642
Q gi|254780927|r 241 LPDRIEAGTYAMAVAMT-GGD-VILKMTDSSLLKT-VFKVMRQTGVDIDIIDEGI-RVRWNGEKLRPVDVITAPFPGFPT 316 (430)
Q Consensus 241 ~~D~ssAa~fl~Aaalt-~g~-i~i~n~~~~~~~~-~l~iL~~mGa~i~~~~~~i-~V~~~~~~l~~~di~~~~~pg~~~ 316 (430)
|||+|||+||++||+++ +++ ++++|+..++.+. ++++|++|||+++|.+++. +|... ..+++++++.+..|
T Consensus 237 pgD~SSAafflaAaai~~~~~~i~~~~v~~~~~~~~~~~vl~~MGa~i~~~~~~~l~V~~~-~~l~gi~vd~~~~p---- 311 (428)
T COG0128 237 PGDYSSAAFFLAAAAITPRSTGITLKNVQPNPTDKGILDVLEKMGADIEIGDDSVLRVRGS-GELKGIEVDMDDMP---- 311 (428)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEEC-CCCCCEEECCCCCC----
T ss_conf 7972669999999984278750450157768660489999997599179746834999625-87567676754382----
Q ss_pred CCHHHHHHHHHCCCCCEEEEE----ECCH-HHHHH-HHHHHHCCCEEEEECCEEEEECCCCCEEEE-EEEC-CHHHHHHH
Q ss_conf 101346676313566416732----0465-67566-788974885899978969998889851015-6608-18999999
Q gi|254780927|r 317 DLQAQFMAMMCCAAGISHITE----TIFE-NRFMH-VQELVRLGARISLSGQTARVEGVQGLRGAP-VMAT-DLRASVSL 388 (430)
Q Consensus 317 D~~p~la~laa~A~G~s~I~e----~i~e-~R~~~-~~eL~klG~~v~~~~d~l~I~G~~~l~g~~-v~~~-DHRiaMa~ 388 (430)
|+.|++|++||||+|+|+|++ |++| ||+.. ++||+|||++|++.+|+++|+|+++++|+. ++++ ||||||||
T Consensus 312 D~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e~~Dgl~I~g~~~l~g~~~v~s~~DHRiaMa~ 391 (428)
T COG0128 312 DLAPTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETEDGLIITGGTKLKGAGTVDSYGDHRIAMAF 391 (428)
T ss_pred HHHHHHHHHHHHCCCCEEEECHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 27899999998547976997657732030247999999999658677864883899789878998510476868999999
Q ss_pred HHHHHHCCCEEEEECCCEECCCCCCHHHHHHHCCCEE
Q ss_conf 9999854981999243301177848788998669789
Q gi|254780927|r 389 VIAALAAQGETEISRVYHLDRGFECLEKKLSRCGALI 425 (430)
Q Consensus 389 ~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~LGa~I 425 (430)
++|+|.++++++|+|++||+||||+||++|++||+++
T Consensus 392 aia~l~~~~~v~I~~~~~v~kSfP~F~~~l~~l~~~~ 428 (428)
T COG0128 392 AVAGLLSEGGVRIDDAECVAKSFPGFFEDLASLGARI 428 (428)
T ss_pred HHHHHHCCCCEEECCCCCEECCCCHHHHHHHHHHCCC
T ss_conf 9999605897897274610345843999999842779
No 10
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=100.00 E-value=0 Score=679.58 Aligned_cols=397 Identities=24% Similarity=0.308 Sum_probs=348.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCC
Q ss_conf 13789769646689999999974699699986983699999999999749899992774114202452599943666586
Q gi|254780927|r 12 LNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDL 91 (430)
Q Consensus 12 L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (430)
|+|+|++|||||++||+|++|+|++|+|+|+|+|+|+|+.+|+++||+||++|+++++...+....... ...
T Consensus 1 L~G~v~~pgSKs~s~R~L~~aaLa~g~s~i~n~~~s~D~~~~i~~L~~LG~~i~~~~~~~~i~~~~~~~--------~~~ 72 (408)
T cd01554 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKDGVITIQGVGMAG--------LKA 72 (408)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCC--------CCC
T ss_conf 947997888599999999999974998999518907899999999998799899948999999468875--------568
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC--CCEEEEEECCCCCCCCCC
Q ss_conf 444023431132110225332333210453058663332012123433321033224568--614899950244333333
Q gi|254780927|r 92 TGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDG--GYVDARVSSKGLRGTSYT 169 (430)
Q Consensus 92 ~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~--g~~p~~i~g~~l~g~~i~ 169 (430)
......++++++++||+.++++.. ...+.++|+|+|++|||++|+++|++|||+|++++ +++|+.+.++ +.++.+.
T Consensus 73 ~~~~l~~g~sgt~~r~l~~~l~~~-~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~~~~~~p~~~~~~-~~~~~~~ 150 (408)
T cd01554 73 PQNALNLGNSGTAIRLISGVLAGA-DFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDLPPLLKGGK-NLGPIHY 150 (408)
T ss_pred CCCCHHHCCCCCCHHHHHHHHHCC-CCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCEEEEECCC-CCCCEEE
T ss_conf 865400004731399999999768-95699748841167984999999997798899608964235532576-5576399
Q ss_pred CC-CCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCHHCC
Q ss_conf 34-34666113566504444687332332220159989987501454432024432120255422223420014310000
Q gi|254780927|r 170 FP-KVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEAG 248 (430)
Q Consensus 170 l~-~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~ssAa 248 (430)
.+ ..|+|++|++||||++++|.|+|.|++++||+++|++||++||++|++.++++|.|+|++.|++.+|+||||||+|+
T Consensus 151 ~~~~~SsQ~~SalLlaa~~~~g~t~I~~~~s~pyv~~t~~~L~~fG~~i~~~~~~~~~i~g~~~~~~~~~~V~~D~s~A~ 230 (408)
T cd01554 151 EDPIASAQVKSALMFAALLAKGETVIIEAAKEPTINHTENMLQTFGGHISVQGTKKIVVQGPQKLTGQKYVVPGDISSAA 230 (408)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCCCEECCCCEEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf 88988599999999999865898320345788739999999996599632048728998488666789888987989999
Q ss_pred HHHHHCCCCCCCEEEECCCCCCC-CCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 10000012444201002345642-10468897526743674451267532676431576215356664210134667631
Q gi|254780927|r 249 TYAMAVAMTGGDVILKMTDSSLL-KTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMC 327 (430)
Q Consensus 249 ~fl~Aaalt~g~i~i~n~~~~~~-~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p~la~laa 327 (430)
||++|+++++|+|+|+|+..++. ..|+++|++||+++++.++++.+.. ..+++++++..++| +++|++|+++++|+
T Consensus 231 ~~l~aa~l~~g~v~i~~~~~~~~~~~~l~iL~~mG~~i~~~~~~i~v~~--~~l~~~~i~~~~~p-~~~D~~p~lavla~ 307 (408)
T cd01554 231 FFLVAAAIAPGRLVLQNVGINETRTGIIDVLRAMGAKIEIGEDTISVES--SDLKATEICGALIP-RLIDELPIIALLAL 307 (408)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEC--CCCCEEEECCCCCC-CCHHHHHHHHHHHH
T ss_conf 9999998679969991789756679999999975998998398678546--99851550554488-72237999999998
Q ss_pred CCCCCEEEEE----ECCH-HHHH-HHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEEC-CHHHHHHHHHHHHHCCCEEE
Q ss_conf 3566416732----0465-6756-67889748858999789699988898510156608-18999999999985498199
Q gi|254780927|r 328 CAAGISHITE----TIFE-NRFM-HVQELVRLGARISLSGQTARVEGVQGLRGAPVMAT-DLRASVSLVIAALAAQGETE 400 (430)
Q Consensus 328 ~A~G~s~I~e----~i~e-~R~~-~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~-DHRiaMa~~ia~L~a~g~~~ 400 (430)
+|+|+|+|++ +.+| ||+. +++||+|||+++++++|+++|+|++.++|++++++ |||+||||++|||.++|+++
T Consensus 308 ~a~G~s~i~~~~~lr~KEsdR~~~~~~eL~~lG~~~~~~~d~l~I~g~~~l~g~~v~s~~DHR~ama~~vaal~~~g~~~ 387 (408)
T cd01554 308 QAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIEPTADGMIIKGKEKLHGARVNTFGDHRIGMMTALAALVADGEVE 387 (408)
T ss_pred HCCCCCEECCCEEECCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 56588641411443034640899999999987997999899899979987877856678419999999999985899599
Q ss_pred EECCCEECCCCCCHHHHHHHC
Q ss_conf 924330117784878899866
Q gi|254780927|r 401 ISRVYHLDRGFECLEKKLSRC 421 (430)
Q Consensus 401 I~~~~~i~ksyp~f~~~L~~L 421 (430)
|+|++||+|||||||++|++|
T Consensus 388 I~~~~~v~ksyP~F~~~L~~L 408 (408)
T cd01554 388 LDRAEAINTSYPSFFDDLESL 408 (408)
T ss_pred EECCCEEECCCHHHHHHHHCC
T ss_conf 937636757467299998658
No 11
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00 E-value=0 Score=671.60 Aligned_cols=394 Identities=25% Similarity=0.362 Sum_probs=344.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCC
Q ss_conf 13789769646689999999974699699986983699999999999749899992774114202452599943666586
Q gi|254780927|r 12 LNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDL 91 (430)
Q Consensus 12 L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (430)
|+|+|++|||||++||+|++|+|++|+|+|+|+|+++|+..|+++||+||++|+++++...+... .....
T Consensus 1 L~G~v~ipgsKs~s~r~li~aaL~~g~~~i~n~~~~~Dv~~~~~~l~~lG~~i~~~~~~~~i~~~----------~~~~~ 70 (409)
T cd01556 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEEGGTVEIVGG----------GGLGL 70 (409)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECC----------CCCCC
T ss_conf 93899878748999999999996599899904890399999999999879989980899999888----------88777
Q ss_pred C-CCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCCEEEEEECCCCCCCCC
Q ss_conf 4-4402343113211022533233321045305866333201212343332103322456--861489995024433333
Q gi|254780927|r 92 T-GSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKID--GGYVDARVSSKGLRGTSY 168 (430)
Q Consensus 92 ~-~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~--~g~~p~~i~g~~l~g~~i 168 (430)
. .....++++++++||+.++++..+ +.+.++|||+|++|||++|+++|++|||+|++. ++++|+. .+++++++++
T Consensus 71 ~~~~~l~~g~sGt~~R~l~~ll~~~~-~~~~l~G~~~l~~RPi~~~i~~L~~lGa~i~~~~~~~~~~~~-~~~~l~~~~i 148 (409)
T cd01556 71 PPEAVLDCGNSGTTMRLLTGLLALQG-GDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYPPLI-GGGGLKGGEV 148 (409)
T ss_pred CCCHHHHHCCCHHHHHHHHHHHCCCC-CEEEEECCHHHCCCCCHHHHHHHHHCCCEEEECCCCCCEEEE-CCCCCCCCEE
T ss_conf 87411100024121765766651588-369983773425898468999999889999962797533472-4899505289
Q ss_pred CCCCC-CCCCEEEEEEECCCCCCCCCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCH
Q ss_conf 33434-6661135665044446873323322--20159989987501454432024432120255422223420014310
Q gi|254780927|r 169 TFPKV-SVGATQVMMMVASLSHGDTSIYNAA--REPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRI 245 (430)
Q Consensus 169 ~l~~~-S~q~~s~lLlaA~~a~G~t~I~~~~--~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~s 245 (430)
++|.. |+|++|++||||++++|.|+|.|+. ++||+++|++||++||++|++.++++|+|+|++.|++.+|+||||||
T Consensus 149 ~l~~~~SSQ~~SalLmaa~~a~g~t~i~~~~~es~~yvd~T~~~L~~~Ga~I~~~~~~~i~I~g~~~l~~~~~~V~~D~s 228 (409)
T cd01556 149 EIPGAVSSQFKSALLLAAPLAEGPTTIIIGELESKPYIDHTERMLRAFGAEVEVDGYRTITVKGGQKYKGPEYTVEGDAS 228 (409)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCEECCCCCHH
T ss_conf 97764551188799999873699579974674661199999999985798289639819997786334675013788988
Q ss_pred HCCHHHHHCCCCCCCEEEECCCCCCCC-CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 000100000124442010023456421-0468897526743674451267532676431576215356664210134667
Q gi|254780927|r 246 EAGTYAMAVAMTGGDVILKMTDSSLLK-TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMA 324 (430)
Q Consensus 246 sAa~fl~Aaalt~g~i~i~n~~~~~~~-~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p~la~ 324 (430)
+|+||++||++++|+|+++|++.++.+ .++++|++||+++++.++++....+...++++++++.++| |++|++++
T Consensus 229 ~A~~~l~aaalt~~~v~i~~v~~~~~d~~~~~~L~~mG~~i~~~~~~~i~~~~~~~l~~~~i~~~~~p----Dl~p~lav 304 (409)
T cd01556 229 SAAFFLAAAAITGSEIVIKNVGLNSGDTGIIDVLKEMGADIEIGNEDTVVVESGGKLKGIDIDGNDIP----DEAPTLAV 304 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCEEECCCCCC----HHHHHHHH
T ss_conf 99999999997699499907783211799999999879989994697899735888544782587686----05799999
Q ss_pred HHHCCCCCEEEEE----ECCH-HHHHH-HHHHHHCCCEEEEECCEEEEECCC-CCEEEEEEE-CCHHHHHHHHHHHHHCC
Q ss_conf 6313566416732----0465-67566-788974885899978969998889-851015660-81899999999998549
Q gi|254780927|r 325 MMCCAAGISHITE----TIFE-NRFMH-VQELVRLGARISLSGQTARVEGVQ-GLRGAPVMA-TDLRASVSLVIAALAAQ 396 (430)
Q Consensus 325 laa~A~G~s~I~e----~i~e-~R~~~-~~eL~klG~~v~~~~d~l~I~G~~-~l~g~~v~~-~DHRiaMa~~ia~L~a~ 396 (430)
+||+|+|+|+|++ +++| ||+.. +.||+|||+++++++|++.|+|++ .+.++.+++ +|||+||||++|||.++
T Consensus 305 la~~a~G~s~i~~~~~lr~KEsdRi~a~~~eL~k~Ga~i~~~~d~l~I~G~~~~~~~~~~~t~~DhR~ama~~iaal~a~ 384 (409)
T cd01556 305 LAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDGLIIEGGPLKGAGVEVYTYGDHRIAMSFAIAGLVAE 384 (409)
T ss_pred HHHHCCCCEEEEECCCCCCEECCHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHCC
T ss_conf 99856897278732011203130789999999977997999799799989887788515889998899999999998679
Q ss_pred CEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 8199924330117784878899866
Q gi|254780927|r 397 GETEISRVYHLDRGFECLEKKLSRC 421 (430)
Q Consensus 397 g~~~I~~~~~i~ksyp~f~~~L~~L 421 (430)
|+++|+|++||+|||||||++|++|
T Consensus 385 ~~~~I~~~~~i~ksyp~f~~~l~~L 409 (409)
T cd01556 385 GGVTIEDPECVAKSFPNFFEDLESL 409 (409)
T ss_pred CCEEEECCCEEECCCHHHHHHHHCC
T ss_conf 9899946637878656599998649
No 12
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=0 Score=664.50 Aligned_cols=405 Identities=18% Similarity=0.244 Sum_probs=340.8
Q ss_pred CEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEE
Q ss_conf 43898279731378976964668999999997469969998698369999999999974989999277411420245259
Q gi|254780927|r 2 DRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTM 81 (430)
Q Consensus 2 ~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~ 81 (430)
..+.|.|+++++|+|++|||||+|||+|++|+||+|+|+|+|++.|+|+++|+++||+||++|+.+++...+. +..+.+
T Consensus 241 ~~~~~~p~~~~~G~I~vPGDKSISHRalilaaLA~G~s~I~n~L~seD~~~Ti~alr~LGv~I~~~~~~~vv~-g~~g~~ 319 (673)
T PRK11861 241 EHLDLGPFSHAQGTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRDGGTCVVG-GTRGAF 319 (673)
T ss_pred EEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEE-CCCCCC
T ss_conf 3577346765405786698610899999999862898899568876789999999998398899819999997-898876
Q ss_pred EEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEEE
Q ss_conf 99436665864440234311321102253323332104530586633320121234333210332245--6861489995
Q gi|254780927|r 82 HFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVS 159 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i~ 159 (430)
.......+|+|+||++|||.++++.++. .+.++||.||++|||++++++|++|||+|++ ++|++|++|.
T Consensus 320 --------~~p~~~ld~GNSGTt~RLL~Glla~~~~-~~~ltGD~SL~kRPM~rvi~pL~~mGA~I~~~~~~G~~Pl~I~ 390 (673)
T PRK11861 320 --------TAKTADLFLGNAGTAVRPLTAALAVNGG-EYRIHGVPRMHERPIGDLVDGLRQIGARIDYEGNEGFPPLRIR 390 (673)
T ss_pred --------CCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEE
T ss_conf --------8998605605850689999999967997-4999887677649867999999977993997789996877986
Q ss_pred CCCCC-CCCCCCCC-CCCCCEEEEEEECCCC--C-CCCCCC---CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCC
Q ss_conf 02443-33333343-4666113566504444--6-873323---322201599899875014544320244321202554
Q gi|254780927|r 160 SKGLR-GTSYTFPK-VSVGATQVMMMVASLS--H-GDTSIY---NAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVT 231 (430)
Q Consensus 160 g~~l~-g~~i~l~~-~S~q~~s~lLlaA~~a--~-G~t~I~---~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~ 231 (430)
+..+. +..+..+. .|+|++|++||++++. . +.++++ ...++||+++|++||+.||++|+.++.+.+.+++++
T Consensus 391 g~~~~~~~~i~~~~~~SSQ~~SalLla~~~l~a~~~~~viei~~~~~srp~~e~TlrmL~~fGi~v~~~g~~~~~i~~g~ 470 (673)
T PRK11861 391 PATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVERDGWQRFTVPAGV 470 (673)
T ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCEEEEECCCC
T ss_conf 77557787222168541999999999988863579952998478217877399999999977948995498589977984
Q ss_pred CC-CCCCCEECCCCHHCCHHHHHCCCCCCCEEEECCCCCCCC---CHHHHHHHCCCCEEEECCCEEEEE---CCCCCCEE
Q ss_conf 22-223420014310000100000124442010023456421---046889752674367445126753---26764315
Q gi|254780927|r 232 SL-SGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLK---TVFKVMRQTGVDIDIIDEGIRVRW---NGEKLRPV 304 (430)
Q Consensus 232 ~l-~~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~---~~l~iL~~mGa~i~~~~~~i~V~~---~~~~l~~~ 304 (430)
++ .+.+|.||+|+|||+||++|+++++|+++++|++.+++| .|+++|++|||++++.++++++.. ...++.++
T Consensus 471 ~~~~~~~i~VpgD~SSAAFfiaAa~l~gs~i~i~nv~~n~trgd~g~l~iL~~MGa~I~~~~~~~~v~~i~~~~~~l~~i 550 (673)
T PRK11861 471 RYRSPGTIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIEVRGIGHDHGRLAPI 550 (673)
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCEEECCCCCCCCCCCCC
T ss_conf 02688852579974668999999837799669843578888540589999998699469658726851333566764673
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEE----ECCH-HHHHHH-HHHHHCCCEEEEECCEEEEECCCCCE-EEEE
Q ss_conf 762153566642101346676313566416732----0465-675667-88974885899978969998889851-0156
Q gi|254780927|r 305 DVITAPFPGFPTDLQAQFMAMMCCAAGISHITE----TIFE-NRFMHV-QELVRLGARISLSGQTARVEGVQGLR-GAPV 377 (430)
Q Consensus 305 di~~~~~pg~~~D~~p~la~laa~A~G~s~I~e----~i~e-~R~~~~-~eL~klG~~v~~~~d~l~I~G~~~l~-g~~v 377 (430)
+++....| |+.|+|+++||||+|+|+|++ +++| ||++.+ ++|++||+++++.+|+++|.|+..+. |+.|
T Consensus 551 ~i~~~~ip----De~PiLaVaAa~A~G~T~i~ga~eLRvKESDRI~am~~~L~~lGv~vee~~Dgl~I~g~~~~~~g~~I 626 (673)
T PRK11861 551 DMDFNLIP----DAAMTIAVAALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEEGADYLVVTPPAQLTPNASI 626 (673)
T ss_pred CCCCCCCC----CHHHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCEE
T ss_conf 25813397----47999999999689978987843635043289999999999769989982897999798778999677
Q ss_pred EEC-CHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 608-18999999999985498199924330117784878899866
Q gi|254780927|r 378 MAT-DLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRC 421 (430)
Q Consensus 378 ~~~-DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~L 421 (430)
+++ ||||||||+||||.. ++++|+|++||++|||+||++|++|
T Consensus 627 ~s~~DHRIAMsfavagL~~-~~i~I~d~~~V~~SFP~F~d~f~~L 670 (673)
T PRK11861 627 DTYDDHRMAMCFSLVSLGG-VPVRINDPKCVGKTFPDYFDRFLAL 670 (673)
T ss_pred ECCCCHHHHHHHHHHHHCC-CCEEEECCCEEECCCCCHHHHHHHH
T ss_conf 4898889999999999579-9879926880123288589999997
No 13
>pfam00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase).
Probab=100.00 E-value=0 Score=666.58 Aligned_cols=402 Identities=28% Similarity=0.366 Sum_probs=344.1
Q ss_pred EECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEEC
Q ss_conf 82797313789769646689999999974699699986983699999999999749899992774114202452599943
Q gi|254780927|r 6 IIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRC 85 (430)
Q Consensus 6 V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~ 85 (430)
|+||++|+|+|++|||||+|||+|++|+|++|+|+|+|+|+|+|+.+|+++||+||++|+++++........+.......
T Consensus 1 i~gg~~L~G~v~vpgSKS~s~R~li~AaL~~g~s~i~n~~~s~Dv~~~~~~l~~lG~~i~~~~~~~~~~~~~g~~~~~~~ 80 (415)
T pfam00275 1 VTGGSRLNGEVKVPGSKSNSHRALLLAALAAGESTITNLLDSDDTRLMLEALRALGAEVIELDEEKTVVIVEGLGGSFEA 80 (415)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCC
T ss_conf 96978067899778618999999999998199999924990799999999999879989998899679997899975459
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCCEEEEEECCCC
Q ss_conf 66658644402343113211022533233321045305866333201212343332103322456--8614899950244
Q gi|254780927|r 86 RHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKID--GGYVDARVSSKGL 163 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~--~g~~p~~i~g~~l 163 (430)
.......++++++++|||.++++.... .+.++|||+|++|||++|+++|++|||++++. .+++|+.+.+..+
T Consensus 81 -----~~~~~~~~g~Sgt~lr~L~~~~~~~~~-~~~l~G~~~L~~RP~~~l~~~L~~lGa~i~~~~~~~~~pi~i~~~~~ 154 (415)
T pfam00275 81 -----PYELVLDLGNSGTAMRPLLGRLALQSG-EVVLTGDDSIGERPIDRLLDGLRQLGAEIEYREGYGYAPLKVRGLKL 154 (415)
T ss_pred -----CHHHHHHCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
T ss_conf -----878877513289999999999806995-59841873346897279999999879889994253112221138998
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCEEECCCCCCCCCCCEECC
Q ss_conf 33333334346661135665044446873323322201599899875014544320244-32120255422223420014
Q gi|254780927|r 164 RGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGS-STITIQGVTSLSGTRHRILP 242 (430)
Q Consensus 164 ~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~-~~i~I~g~~~l~~~~~~V~~ 242 (430)
++.+|..+.+|.|.++++|+|+.+++|+|+|.|++++||++||++||++||++|++.++ ++|.|+|++++.+.+|+|||
T Consensus 155 ~~~~i~~~~sSq~~s~lll~a~~~~~g~t~i~~~~s~pyv~~T~~~L~~~G~~i~~~~~~~~i~I~g~~~~~~~~~~V~~ 234 (415)
T pfam00275 155 GGVHIDGSISSQFVTSLLMLAALLAEGTTIIENLASEPYIDDTENMLNKFGAKIEGSGTETSIYIKGGQKLPGVEYRVEG 234 (415)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCEEHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 66799625677999889998887189813123678886819999999976976897288768999277445556642478
Q ss_pred CCHHCCHHHHHCCCCCCCEEEECCCCCCCCC---HHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 3100001000001244420100234564210---4688975267436744512675326764315762153566642101
Q gi|254780927|r 243 DRIEAGTYAMAVAMTGGDVILKMTDSSLLKT---VFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQ 319 (430)
Q Consensus 243 D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~---~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~ 319 (430)
|||+|+||++||++++|+|+|+|++.+++|. ++++|++||+++++.++.+.+.... .+.+++++....| |+.
T Consensus 235 D~ssAa~~l~aa~l~~g~i~i~~~~~~~~q~d~~~l~iL~~mG~~i~~~~~~~~~~~~~-~l~~~~~d~~~~p----D~~ 309 (415)
T pfam00275 235 DRSSAAYFLAAAAITGGTVKVENVGINSLQGDRAADEILEKMGAEITQGEDSDIVVGPP-GLRGIDVDMNTAP----DPA 309 (415)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEEECC-CCCCEEEECCCCC----CCH
T ss_conf 88899999999986698499947764335235999999998899699648828999667-8874036656587----615
Q ss_pred HHHHHHHHCCCCCEEEEE----ECCH-HHH-HHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEEC-CHHHHHHHHHHH
Q ss_conf 346676313566416732----0465-675-667889748858999789699988898510156608-189999999999
Q gi|254780927|r 320 AQFMAMMCCAAGISHITE----TIFE-NRF-MHVQELVRLGARISLSGQTARVEGVQGLRGAPVMAT-DLRASVSLVIAA 392 (430)
Q Consensus 320 p~la~laa~A~G~s~I~e----~i~e-~R~-~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~-DHRiaMa~~ia~ 392 (430)
|++++++++|+|.|+|+. +.+| +|+ .++.||+|||+++++++|+++|.|+++++|++|+++ |||+||||++||
T Consensus 310 p~la~~a~~a~g~t~~~g~~~lr~KEsdRi~~~~~eL~klG~~i~~~~d~l~I~g~~~l~g~~v~s~~DHRiaMa~~ia~ 389 (415)
T pfam00275 310 PTTAVQAAFAEGTSRIEGISELRVKETDRLFAMATELRKLGAEVEEGPDGLIITAVVELKGAEVDSYGDHRAAMAFALAG 389 (415)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 57999998651332115540689999710999999999879979997998999699878777670897099999999999
Q ss_pred HHCCCEEEEECCCEECCCCCCHHHHH
Q ss_conf 85498199924330117784878899
Q gi|254780927|r 393 LAAQGETEISRVYHLDRGFECLEKKL 418 (430)
Q Consensus 393 L~a~g~~~I~~~~~i~ksyp~f~~~L 418 (430)
|.++|+++|+|++||+|||||||++|
T Consensus 390 l~~~g~~~I~~~~~v~ksyP~f~~~L 415 (415)
T pfam00275 390 LVAEGEVIIDDPECTDKSFPDFFEKL 415 (415)
T ss_pred HHCCCCEEEECCEEEECCCHHHHHHC
T ss_conf 85899599957747747265149559
No 14
>KOG0692 consensus
Probab=100.00 E-value=0 Score=405.16 Aligned_cols=410 Identities=19% Similarity=0.227 Sum_probs=332.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC-CEEEEECCCCEEEECCCCEEEEECCC
Q ss_conf 97313789769646689999999974699699986983699999999999749-89999277411420245259994366
Q gi|254780927|r 9 GNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHG-VEILSDSSYNDQNKSYSSTMHFRCRH 87 (430)
Q Consensus 9 ~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG-~~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (430)
.+.+.|-|.+|||||+++|++++|+|.+|+..+.|++.|+||..|+.+|..|| +..+|++.+....++.++.+.+..+.
T Consensus 102 ir~i~~~i~~pgSKs~snralllaal~eg~~~~~nlL~sddt~~mlsaL~~L~~~~~~we~~~~~vvEG~gg~~~~~~~~ 181 (595)
T KOG0692 102 IREISGLIKLPGSKSLSNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEENNRAVVEGCGGEFSIDSKS 181 (595)
T ss_pred HHHHHCEEECCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEECCCCEEEECHHH
T ss_conf 88752334378871010047999987456302154234521466653577760565002379879997689802101111
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCC----CCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEEECC
Q ss_conf 65864440234311321102253323----332104530586633320121234333210332245--686148999502
Q gi|254780927|r 88 IVDLTGSYDLVSKMRASFWVIGPLLA----REGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVSSK 161 (430)
Q Consensus 88 ~~~~~~~~~~~~~~r~s~~~l~~lla----~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i~g~ 161 (430)
.. ..+.++.++..|+++.+++ .-+...+.++|..++++||+++|++.|+|+||+|++ ..+++|+++...
T Consensus 182 d~-----eLylgnagta~r~lt~~aa~V~~k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~~~~t~~~p~dV~~~ 256 (595)
T KOG0692 182 DI-----ELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTLGTNCPPVDVNAN 256 (595)
T ss_pred HH-----HHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCEEEECC
T ss_conf 12-----3306764145666788888861678872599826740125776189999986387168733678983332003
Q ss_pred -CCCCCCCCCCC-CCCCCEEEEEEECCCCCCCCCCC----CCCCCHHHHHHHHHHHCCCCCCCCCCC--CCEEECCCCCC
Q ss_conf -44333333343-46661135665044446873323----322201599899875014544320244--32120255422
Q gi|254780927|r 162 -GLRGTSYTFPK-VSVGATQVMMMVASLSHGDTSIY----NAAREPEVVDLAHCLNSMGAKISGMGS--STITIQGVTSL 233 (430)
Q Consensus 162 -~l~g~~i~l~~-~S~q~~s~lLlaA~~a~G~t~I~----~~~~~P~i~~t~~~L~~~Gv~I~~~~~--~~i~I~g~~~l 233 (430)
+++|+.+.+-. +|+|+.++++|+|+++.|..++. .+.|.||++||++||++||+++++.++ +++.|.|+.+.
T Consensus 257 ~~~~gg~V~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~IS~pyv~mt~~lme~fgvnv~~s~~~~~~y~i~g~~y~ 336 (595)
T KOG0692 257 GGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVEHSTSWDRFYVIGGQKYK 336 (595)
T ss_pred CCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCC
T ss_conf 78767545653551366888998740420796589972685646655668999999837674743777646752685557
Q ss_pred CCCCCEECCCCHHCCHHHHHCCCCCCCEEEECCCCCCCC---CHHHHHHHCCCCEEEECCCEEEEECCC------CCCEE
Q ss_conf 223420014310000100000124442010023456421---046889752674367445126753267------64315
Q gi|254780927|r 234 SGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLK---TVFKVMRQTGVDIDIIDEGIRVRWNGE------KLRPV 304 (430)
Q Consensus 234 ~~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~---~~l~iL~~mGa~i~~~~~~i~V~~~~~------~l~~~ 304 (430)
++.+|.|++|.|+|.+|++-+++++-++++.|+...++| .|-++|+.|||++.|..++++|.++.. .++.+
T Consensus 337 ~p~~~~Ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svtv~gpp~ga~~~~~lr~i 416 (595)
T KOG0692 337 SPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVTVTGPPRGAFGMRHLRAI 416 (595)
T ss_pred CCCCCEEECCCCCCCCCCEEEEEECCEEEECCCCCEECCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEHHHH
T ss_conf 99980464462223232103667523255436461321565216665100456023303544336888774331341220
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCC-----CCCEEEEE----ECCH-HHHH-HHHHHHHCCCEEEEECCEEEEECCC--C
Q ss_conf 7621535666421013466763135-----66416732----0465-6756-6788974885899978969998889--8
Q gi|254780927|r 305 DVITAPFPGFPTDLQAQFMAMMCCA-----AGISHITE----TIFE-NRFM-HVQELVRLGARISLSGQTARVEGVQ--G 371 (430)
Q Consensus 305 di~~~~~pg~~~D~~p~la~laa~A-----~G~s~I~e----~i~e-~R~~-~~~eL~klG~~v~~~~d~l~I~G~~--~ 371 (430)
|+ ..+ ++|...++++.|+++ .+.|+|.. +++| +|+. ...||+|||+.++|.+|++.|.+++ .
T Consensus 417 D~-m~~----m~d~~~t~sVvA~~a~~~s~gdpttI~~~as~rvket~r~ia~~~el~klg~~~~E~~dg~~v~~~~~k~ 491 (595)
T KOG0692 417 DV-MNK----MPDVAMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDGYCVITPPEKK 491 (595)
T ss_pred CC-CCC----CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHH
T ss_conf 22-135----6436676658888642568999830544322567778999998777887522121058517994786575
Q ss_pred CEEEEEE---EC-CHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHH-CCCEEEEE
Q ss_conf 5101566---08-1899999999998549819992433011778487889986-69789995
Q gi|254780927|r 372 LRGAPVM---AT-DLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR-CGALIQRI 428 (430)
Q Consensus 372 l~g~~v~---~~-DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~-LGa~Ie~i 428 (430)
|+-++.+ +. |||+||+|.+++..+.-++.|.+..|..|+||+||+.|.+ .|.++.+-
T Consensus 492 lk~aE~~g~~TydDhr~am~fsvLA~~~~~~~~I~d~~ct~kt~p~y~~Vl~~~~~~kltga 553 (595)
T KOG0692 492 LKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTRKTFPDYFQVLERITKHKLTGA 553 (595)
T ss_pred CCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 15244305311344323022568874368886014788552334059999998861356566
No 15
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=99.88 E-value=8.2e-21 Score=155.04 Aligned_cols=278 Identities=18% Similarity=0.239 Sum_probs=153.2
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEC-CCC-CCCCCCC----CCCCCHHHH
Q ss_conf 0121234333210332245686148999502443333333434666113566504-444-6873323----322201599
Q gi|254780927|r 131 RPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQVMMMVA-SLS-HGDTSIY----NAAREPEVV 204 (430)
Q Consensus 131 RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s~lLlaA-~~a-~G~t~I~----~~~~~P~i~ 204 (430)
+-....+++|++||++|+.+++. -+.+.++++.......+..+. .-.++|+++ +++ .|+..+. ..-.++.++
T Consensus 48 ~D~~~t~~~l~~LG~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~-~R~sil~lg~Llar~g~~~~~~~Gg~~lg~RPm~ 125 (417)
T PRK09369 48 SDVETMIELLRSLGAKVERDEGG-TLTIDASNINNTEAPYELVKK-MRASILVLGPLLARFGEAKVSLPGGCAIGARPVD 125 (417)
T ss_pred HHHHHHHHHHHHCCCEEEECCCC-EEEEECCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCH
T ss_conf 89999999999779989985898-899978987778699678631-2365887788884169449953798744688728
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCHHCC---HHHHHCCCCCCCEEEECCCCCCC-CCHHHHHHH
Q ss_conf 89987501454432024432120255422223420014310000---10000012444201002345642-104688975
Q gi|254780927|r 205 DLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEAG---TYAMAVAMTGGDVILKMTDSSLL-KTVFKVMRQ 280 (430)
Q Consensus 205 ~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~ssAa---~fl~Aaalt~g~i~i~n~~~~~~-~~~l~iL~~ 280 (430)
..++-|++||++|+..+ ..+.+...+.+++.+|+.+ ++|+. ..+.|+.+..|..+|+|...++- .-.++.|++
T Consensus 126 ~~~~~L~~lGA~i~~~~-g~~~~~~~~~L~g~~i~l~--~~S~~~t~~lLlAa~~A~G~T~I~n~~~ePei~~t~~mL~~ 202 (417)
T PRK09369 126 LHLKGLEALGAEIEIEH-GYVKAKAAGRLKGAHIVLD--FPSVGATENILMAAVLAEGTTVIENAAREPEIVDLANFLNK 202 (417)
T ss_pred HHHHHHHHCCEEEECCC-CCEEEEECCCCCCCCEECC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99988974883995148-9479997888767623357--68745777899777645896024556778619999999997
Q ss_pred CCCCEEEEC-CCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCHHHHH-HHHHHHHCCCE
Q ss_conf 267436744-51267532676431576215356664210--134667631356641673204656756-67889748858
Q gi|254780927|r 281 TGVDIDIID-EGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFENRFM-HVQELVRLGAR 356 (430)
Q Consensus 281 mGa~i~~~~-~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e~R~~-~~~eL~klG~~ 356 (430)
||++|+..+ +.++|.+. .++++.+..--+ |. ..+++++|+...|..+|++ +..+.+. .++-|++||++
T Consensus 203 ~G~~I~~~~~~~i~I~G~-~~l~~~~~~V~g------D~ssAa~fl~Aaaitgg~v~i~~-v~~~~~~~~l~vL~~MGa~ 274 (417)
T PRK09369 203 MGAKISGAGTDTITIEGV-ERLHGAEHRVIP------DRIEAGTFLVAAAITGGDITIRG-ARPEHLEAVLAKLREAGAE 274 (417)
T ss_pred CCCCEEECCCCEEEEECC-CCCCCCEEECCC------CHHHHHHHHHHHHHCCCCEEEEC-CCHHHHHHHHHHHHHCCCE
T ss_conf 798478259965999587-655572334587------77899999999998399189947-8646758999999976998
Q ss_pred EEEECCEEEEECCCCCEEEEEEEC-------CHHHHHHHHHHHHHCCCEEEEECCCEECCCCCC---HHHHHHHCCCEEE
Q ss_conf 999789699988898510156608-------189999999999854981999243301177848---7889986697899
Q gi|254780927|r 357 ISLSGQTARVEGVQGLRGAPVMAT-------DLRASVSLVIAALAAQGETEISRVYHLDRGFEC---LEKKLSRCGALIQ 426 (430)
Q Consensus 357 v~~~~d~l~I~G~~~l~g~~v~~~-------DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~---f~~~L~~LGa~Ie 426 (430)
++.++|++.|.+...+++-+++.. |.= -.|++++..|+|+++|.+ +-|++ +++.|+++||+||
T Consensus 275 i~~~~~~i~v~~~~~l~~i~i~~~~~Pg~~tD~~--p~l~vla~~A~G~t~I~e-----~i~e~R~~~~~eL~kmGa~i~ 347 (417)
T PRK09369 275 IEEGEDGIRVDMPGRLKAVDIKTAPYPGFPTDMQ--AQFMALLTQAEGTSVITE-----TIFENRFMHVPELIRMGADIE 347 (417)
T ss_pred EEEECCEEEEECCCCCCCEEEECCCCCCCCCCHH--HHHHHHHHCCCCCEEEEE-----EECHHHHHHHHHHHHCCCEEE
T ss_conf 9980999999627874412686675899723068--899999970788449998-----762567667999997799799
Q ss_pred EE
Q ss_conf 95
Q gi|254780927|r 427 RI 428 (430)
Q Consensus 427 ~i 428 (430)
.-
T Consensus 348 ~~ 349 (417)
T PRK09369 348 VE 349 (417)
T ss_pred EE
T ss_conf 98
No 16
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=99.87 E-value=1.6e-20 Score=153.10 Aligned_cols=290 Identities=19% Similarity=0.263 Sum_probs=182.3
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC--CCCCCCCCCCCCCEEEEEEE-CCCCCCCCCCCC--CCCCHH
Q ss_conf 3320121234333210332245686148999502443--33333343466611356650-444468733233--222015
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLR--GTSYTFPKVSVGATQVMMMV-ASLSHGDTSIYN--AAREPE 202 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~--g~~i~l~~~S~q~~s~lLla-A~~a~G~t~I~~--~~~~P~ 202 (430)
...+-+..++++|++||++|+.+++.+- |.+.+.. .....++.-.++.+.-+|++ +....+.+++.+ ...++.
T Consensus 34 ~~~~Dv~~~~~~l~~lG~~i~~~~~~~~--i~~~~~~~~~~~~~l~~g~sGt~~R~l~~ll~~~~~~~~l~G~~~l~~RP 111 (409)
T cd01556 34 LDSDDTLATLEALRALGAKIEEEGGTVE--IVGGGGLGLPPEAVLDCGNSGTTMRLLTGLLALQGGDSVLTGDESLRKRP 111 (409)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCEEE--EECCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCHHHCCCC
T ss_conf 9039999999999987998998089999--98888877787411100024121765766651588369983773425898
Q ss_pred HHHHHHHHHCCCCCCCCCCC-CCEEECCCCCCCCCCCEECCCCHH--CCHHHHHCCCCCCCEEEECCCCCCC---CCHHH
Q ss_conf 99899875014544320244-321202554222234200143100--0010000012444201002345642---10468
Q gi|254780927|r 203 VVDLAHCLNSMGAKISGMGS-STITIQGVTSLSGTRHRILPDRIE--AGTYAMAVAMTGGDVILKMTDSSLL---KTVFK 276 (430)
Q Consensus 203 i~~t~~~L~~~Gv~I~~~~~-~~i~I~g~~~l~~~~~~V~~D~ss--Aa~fl~Aaalt~g~i~i~n~~~~~~---~~~l~ 276 (430)
++..++.|++||++|+..+. ....+.....+++.++.++++-|| .+..+.||.+..|...|.|...++- ..-++
T Consensus 112 i~~~i~~L~~lGa~i~~~~~~~~~~~~~~~~l~~~~i~l~~~~SSQ~~SalLmaa~~a~g~t~i~~~~~es~~yvd~T~~ 191 (409)
T cd01556 112 MGRLVDALRQLGAEIEGREGGGYPPLIGGGGLKGGEVEIPGAVSSQFKSALLLAAPLAEGPTTIIIGELESKPYIDHTER 191 (409)
T ss_pred CHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 46899999988999996279753347248995052899776455118879999987369957997467466119999999
Q ss_pred HHHHCCCCEEEECC-CEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEE-CCHHHHHHHHHHHH
Q ss_conf 89752674367445-1267532676431576215356664210--13466763135664167320-46567566788974
Q gi|254780927|r 277 VMRQTGVDIDIIDE-GIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITET-IFENRFMHVQELVR 352 (430)
Q Consensus 277 iL~~mGa~i~~~~~-~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~-i~e~R~~~~~eL~k 352 (430)
+|++||++|+..+. .++|.+. .++.+.+..-- .|+ ..+++++++...|.-+|++- ..+.+...++-|++
T Consensus 192 ~L~~~Ga~I~~~~~~~i~I~g~-~~l~~~~~~V~------~D~s~A~~~l~aaalt~~~v~i~~v~~~~~d~~~~~~L~~ 264 (409)
T cd01556 192 MLRAFGAEVEVDGYRTITVKGG-QKYKGPEYTVE------GDASSAAFFLAAAAITGSEIVIKNVGLNSGDTGIIDVLKE 264 (409)
T ss_pred HHHHCCCEEEECCCEEEEECCC-CCCCCCEECCC------CCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 9985798289639819997786-33467501378------8988999999999976994999077832117999999998
Q ss_pred CCCEEEEEC-CEEEEECCCCCEEEEEEEC---CHHHHHHHHHHHHHCCCEEEEECCCEECC----CCCCHHHHHHHCCCE
Q ss_conf 885899978-9699988898510156608---18999999999985498199924330117----784878899866978
Q gi|254780927|r 353 LGARISLSG-QTARVEGVQGLRGAPVMAT---DLRASVSLVIAALAAQGETEISRVYHLDR----GFECLEKKLSRCGAL 424 (430)
Q Consensus 353 lG~~v~~~~-d~l~I~G~~~l~g~~v~~~---DHRiaMa~~ia~L~a~g~~~I~~~~~i~k----syp~f~~~L~~LGa~ 424 (430)
||++++..+ +.+.+.+...+++-+++.. | .++.+++++..++|+++|.|+++++- =+-.+.+.|+++||+
T Consensus 265 mG~~i~~~~~~~i~~~~~~~l~~~~i~~~~~pD--l~p~lavla~~a~G~s~i~~~~~lr~KEsdRi~a~~~eL~k~Ga~ 342 (409)
T cd01556 265 MGADIEIGNEDTVVVESGGKLKGIDIDGNDIPD--EAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGAD 342 (409)
T ss_pred CCCEEEEECCCEEEECCCCCCCCEEECCCCCCH--HHHHHHHHHHHCCCCEEEEECCCCCCEECCHHHHHHHHHHHCCCE
T ss_conf 799899946978997358885447825876860--579999999856897278732011203130789999999977997
Q ss_pred EEEE
Q ss_conf 9995
Q gi|254780927|r 425 IQRI 428 (430)
Q Consensus 425 Ie~i 428 (430)
++.-
T Consensus 343 i~~~ 346 (409)
T cd01556 343 VEET 346 (409)
T ss_pred EEEE
T ss_conf 9997
No 17
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=99.86 E-value=6.5e-20 Score=149.16 Aligned_cols=302 Identities=18% Similarity=0.213 Sum_probs=151.5
Q ss_pred HHHHHHHHCC-CCEEE--EC--CCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHC
Q ss_conf 9999997469-96999--86--9836999999999997498999927741142024525999436665864440234311
Q gi|254780927|r 27 PVMIASLLTS-ETLTL--EN--IPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKM 101 (430)
Q Consensus 27 Ral~aaaLa~-g~s~i--~n--~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (430)
+.++.++|+. ++..+ .+ -+........++.|++||++|+.++....+.... +. .........+ ..
T Consensus 95 ~~l~g~ll~~~~~~~~~l~G~~sL~~RPm~~~~~~L~~lGa~i~~~~~~~~i~~~~---l~--g~~~~~~~~S-----~~ 164 (417)
T PRK12830 95 YYFMGALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNEHGAMYLRADE---LK--GAHIYLDVVS-----VG 164 (417)
T ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEECCCCC---CC--CCEEECCCCC-----HH
T ss_conf 88888876215808995278721168977999999997697899778840014788---66--7469766777-----88
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCEEEEEEC-CCCCCCCCCC-C-CCCCCC
Q ss_conf 32110225332333210453058663332012-123433321033224568614899950-2443333333-4-346661
Q gi|254780927|r 102 RASFWVIGPLLAREGYARISLPGGCAIGTRPV-DLFVDSLKSLGVVIKIDGGYVDARVSS-KGLRGTSYTF-P-KVSVGA 177 (430)
Q Consensus 102 r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~-~~l~~~L~~lGa~i~~~~g~~p~~i~g-~~l~g~~i~l-~-~~S~q~ 177 (430)
-++-.+|.++++ .|... + ....+||. ..+..-|+.||++|+..+ .--+++.| +.+++.+|+. | .+|+.
T Consensus 165 ~~~~lllaa~~a-~G~tv--i---~~~~~~p~v~~~~~~L~~~G~~I~~~g-~~~i~i~g~~~l~~~~~~V~pD~~saa- 236 (417)
T PRK12830 165 ATINIMLAAVKA-KGRTV--I---ENAAKEPEIIDVATLLNNMGANIKGAG-TDVIRIEGVEELHGCRHQVIPDRIEAG- 236 (417)
T ss_pred HHHHHHHHHHHC-CCCCC--C---CCCCCCCCHHHHHHHHHHCCCCEEECC-CCEEEECCCCCCCCCEEEECCCCHHHH-
T ss_conf 999999876523-89732--4---555679717999999997698444269-718999352244476023068706689-
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEEC--C----CCHHCCHHH
Q ss_conf 1356650444468733233222015998998750145443202443212025542222342001--4----310000100
Q gi|254780927|r 178 TQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRIL--P----DRIEAGTYA 251 (430)
Q Consensus 178 ~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~--~----D~ssAa~fl 251 (430)
..+.+|....|+.+|+|. ..+..+-.++.|++||++|+..+ +.+.|.+.+.+++.+.... | |+.. .++
T Consensus 237 --~f~~aaa~~~~~v~i~nv-~~~~~~~~l~~L~~MGa~i~~~~-~~i~v~~~~~L~~i~i~~~~~P~~~~Dl~p--~l~ 310 (417)
T PRK12830 237 --TYMILAAACGGGVIINNV-IPEHLESFIAKLEEMGVRVEVED-DSIFVEGQEPLKAVDIKTLPYPGFATDLQQ--PLT 310 (417)
T ss_pred --HHHHHHHHHCCCEEEECC-CCHHHHHHHHHHHHCCCEEEEEC-CEEEEECCCCCCCEEEECCCCCCCCCCHHH--HHH
T ss_conf --999999982994799677-83241789999997698799819-989991389855278625789898752256--789
Q ss_pred HHCCCCCCCEEEE-CCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHC
Q ss_conf 0001244420100-234564210468897526743674451267532676431576215356664210--1346676313
Q gi|254780927|r 252 MAVAMTGGDVILK-MTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCC 328 (430)
Q Consensus 252 ~Aaalt~g~i~i~-n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~ 328 (430)
++++...|+-+|. ++..+..+ ..|-|++||++++..++++.|.++ .++.+.++++. |+ .+.+++++..
T Consensus 311 ~la~~A~G~t~i~~~v~e~R~k-e~deL~kmGa~i~~~~d~~~I~G~-~~l~G~~v~s~-------DHRiaMa~~ia~L~ 381 (417)
T PRK12830 311 PLLLKANGRSVVTDTIYEKRFK-HVDELKRMGANIKVEGRSAIITGP-SKLTGAKVKAT-------DLRAGAALVIAGLM 381 (417)
T ss_pred HHHHHCCCCEEEEEEEHHHHHH-HHHHHHHCCCEEEEECCEEEEECC-CCCCCCEECCC-------CHHHHHHHHHHHHC
T ss_conf 9998278746999501254667-689999678939998999999799-87748626688-------58999999999974
Q ss_pred CCCCEEEEEECCH-HH--HHHHHHHHHCCCEEEEECC
Q ss_conf 5664167320465-67--5667889748858999789
Q gi|254780927|r 329 AAGISHITETIFE-NR--FMHVQELVRLGARISLSGQ 362 (430)
Q Consensus 329 A~G~s~I~e~i~e-~R--~~~~~eL~klG~~v~~~~d 362 (430)
|+|++.|.+. +. +| =.+++.|++||++|+..+|
T Consensus 382 a~g~t~I~~~-~~i~~SyP~F~~~L~~LGa~Ier~~~ 417 (417)
T PRK12830 382 AEGVTEITNI-EHIDRGYSNIIEKLKALGADIWREED 417 (417)
T ss_pred CCCEEEECCC-CEEECCCHHHHHHHHHCCCEEEEECC
T ss_conf 8980998672-22668704199999967997999249
No 18
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=99.86 E-value=6.2e-20 Score=149.33 Aligned_cols=286 Identities=19% Similarity=0.291 Sum_probs=179.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC---CCCCCCCC--CCCCH
Q ss_conf 33320121234333210332245686148999502443333333434666113566504444---68733233--22201
Q gi|254780927|r 127 AIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQVMMMVASLS---HGDTSIYN--AAREP 201 (430)
Q Consensus 127 ~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s~lLlaA~~a---~G~t~I~~--~~~~P 201 (430)
-+..+-....+++|++||++|+.+++. -+.+.++++.......+......++.+++.++++ +..+++.+ -..++
T Consensus 33 ~l~s~D~~~ti~~l~~LG~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~s~lllg~l~a~~~~~~~~~~G~~sL~~R 111 (400)
T cd01555 33 VPDLLDVETMIELLRSLGAKVEFEGEN-TLVIDASNINSTEAPYELVRKMRASILVLGPLLARFGEARVSLPGGCAIGAR 111 (400)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCC-EEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 892599999999999779989992798-8999689887787975775653189999999984669736973388532789
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCHHCCH---HHHHCCCCCCCEEEECCCCCCC-CCHHHH
Q ss_conf 599899875014544320244321202554222234200143100001---0000012444201002345642-104688
Q gi|254780927|r 202 EVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEAGT---YAMAVAMTGGDVILKMTDSSLL-KTVFKV 277 (430)
Q Consensus 202 ~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~ssAa~---fl~Aaalt~g~i~i~n~~~~~~-~~~l~i 277 (430)
.+..+++.|++||++|+..+ ..+.+.....+++.+|.+ |.+|+.. .+.|+.+..|..+|.|...++. .-.++.
T Consensus 112 Pm~~li~~L~~lGa~i~~~~-~~~~~~~~~~l~g~~i~~--~~~S~~~~s~lLlaa~~a~G~t~I~~~~~~P~i~~t~~~ 188 (400)
T cd01555 112 PVDLHLKGLEALGAKIEIED-GYVEAKAAGRLKGARIYL--DFPSVGATENIMMAAVLAEGTTVIENAAREPEIVDLANF 188 (400)
T ss_pred CCHHHHHHHHHCCCCEEECC-CCEEEECCCCCCCCEEEC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 70899999997466103047-978884279853636976--676688889999765523897334557888609999999
Q ss_pred HHHCCCCEEEECC-CEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCHHHHH-HHHHHHHC
Q ss_conf 9752674367445-1267532676431576215356664210--134667631356641673204656756-67889748
Q gi|254780927|r 278 MRQTGVDIDIIDE-GIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFENRFM-HVQELVRL 353 (430)
Q Consensus 278 L~~mGa~i~~~~~-~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e~R~~-~~~eL~kl 353 (430)
|++||++|+..++ .++|.+ ..++.+.++.-- .|+ ..++.++|+...|.-+|++ +..+.+. .++-|++|
T Consensus 189 L~~~G~~i~~~~~~~i~I~g-~~~l~~~~~~V~------~D~SsAa~f~~aaai~gg~i~i~n-v~~~~~~~~~~iL~~M 260 (400)
T cd01555 189 LNKMGAKIEGAGTDTIRIEG-VERLHGAEHTVI------PDRIEAGTFLVAAAITGGDITVEN-VIPEHLEAVLAKLREM 260 (400)
T ss_pred HHHCCCCEEECCCCEEEECC-CCCCCCCCEECC------CCHHHHHHHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHHHC
T ss_conf 99759862545998899778-875557611327------766789999999997499189957-8730308999999968
Q ss_pred CCEEEEECCEEEEECC-CCCEEEEEEEC-------CHHHHHHHHHHHHHCCCEEEEEC-CCEECCCCCCHHHHHHHCCCE
Q ss_conf 8589997896999888-98510156608-------18999999999985498199924-330117784878899866978
Q gi|254780927|r 354 GARISLSGQTARVEGV-QGLRGAPVMAT-------DLRASVSLVIAALAAQGETEISR-VYHLDRGFECLEKKLSRCGAL 424 (430)
Q Consensus 354 G~~v~~~~d~l~I~G~-~~l~g~~v~~~-------DHRiaMa~~ia~L~a~g~~~I~~-~~~i~ksyp~f~~~L~~LGa~ 424 (430)
|++|+.++|.+.|.+. .++++-+++.. |. .-.+++++..|+|+++|.+ .+. +| + ...+.|++|||+
T Consensus 261 Ga~i~~~~~~i~i~~~~~~l~~i~i~~~~~P~~~~D~--~P~lavla~~A~G~t~i~e~v~e-~R-~-~~~~eL~klG~~ 335 (400)
T cd01555 261 GAKIEIGEDGIRVDGDGGRLKAVDIETAPYPGFPTDL--QAQFMALLTQAEGTSVITETIFE-NR-F-MHVDELNRMGAD 335 (400)
T ss_pred CCEEEECCCEEEEEECCCCCCCEECCCCCCCCCCCCH--HHHHHHHHHHCCCCEEEEEEEHH-HH-H-HHHHHHHHCCCE
T ss_conf 9989981898999836887775103577688884326--88999999838884499974347-68-8-889999976996
Q ss_pred EEEEC
Q ss_conf 99951
Q gi|254780927|r 425 IQRIK 429 (430)
Q Consensus 425 Ie~i~ 429 (430)
|+.-+
T Consensus 336 i~~~~ 340 (400)
T cd01555 336 IKVEG 340 (400)
T ss_pred EEEEC
T ss_conf 99989
No 19
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro: IPR006264 These sequences represent 5-enolpyruvyl shikimate-3-phosphate synthase (EPSP_synthase) (3-phosphoshikimate-1-carboxyvinyltransferase,aroA), which catalyzes the sixth of seven steps in the shikimate pathway of the biosynthesis of chorimate. Chorismate is last common precursor of all three aromatic amino acids. ; GO: 0003866 3-phosphoshikimate 1-carboxyvinyltransferase activity.
Probab=99.86 E-value=1.5e-20 Score=153.39 Aligned_cols=309 Identities=22% Similarity=0.287 Sum_probs=199.3
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC-CC-CCCEEEEEECCC--CCCCC-CCCCCCCCCCEEEE
Q ss_conf 225332333210453058663332012123433321033224-56-861489995024--43333-33343466611356
Q gi|254780927|r 107 VIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIK-ID-GGYVDARVSSKG--LRGTS-YTFPKVSVGATQVM 181 (430)
Q Consensus 107 ~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~-~~-~g~~p~~i~g~~--l~g~~-i~l~~~S~q~~s~l 181 (430)
|+-+.|| .|+..|. .-|...-....+++|++||++|+ .+ ++... |.|.+ ++--. -.++.-=+|.+-=+
T Consensus 16 l~laaLA-~G~t~v~----n~L~S~Dt~~~~~al~~LG~~~~~~~~~~~~~--i~G~~g~l~~P~~~~l~~gNsGT~~R~ 88 (444)
T TIGR01356 16 LILAALA-EGETRVR----NLLRSEDTLATLDALRALGAKVEVRGEGEEVV--IEGVGGTLKEPQSAELDLGNSGTTARL 88 (444)
T ss_pred HHHHHHC-CCCEEEE----ECCCCHHHHHHHHHHHHCCCEEEEECCCCEEE--EECCCCCCCCCCCCEEECCCHHHHHHH
T ss_conf 9998516-9847996----15555689999999997198699984887798--625787467987323624462789999
Q ss_pred EEE-CCCCCCCCCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCC-C--CEEECCCCCCCC-CCCEECCCCHHCC--HHHH
Q ss_conf 650-44446873323322--201599899875014544320244-3--212025542222-3420014310000--1000
Q gi|254780927|r 182 MMV-ASLSHGDTSIYNAA--REPEVVDLAHCLNSMGAKISGMGS-S--TITIQGVTSLSG-TRHRILPDRIEAG--TYAM 252 (430)
Q Consensus 182 Lla-A~~a~G~t~I~~~~--~~P~i~~t~~~L~~~Gv~I~~~~~-~--~i~I~g~~~l~~-~~~~V~~D~ssAa--~fl~ 252 (430)
|++ +....+.+++.+.. +++.+..+++-|++||++|+.... + =++|.|.....+ ....+.|+.||-. +++.
T Consensus 89 l~g~la~~~~~~vl~Gd~SL~~RP~~~l~~aL~~lGa~i~~~~~~g~~Pl~i~G~~~~~~~g~v~~~~~~SSQ~~SaLl~ 168 (444)
T TIGR01356 89 LTGVLALASGEVVLTGDESLRKRPMGRLVDALRQLGAEISSREGGGSLPLTISGPNGLRGKGIVYISGSASSQYKSALLL 168 (444)
T ss_pred HHHHHHHCCCCEEEECCCHHCCCCCHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 99999853961899536102008870467998756959976078995457888888877761289878536269999999
Q ss_pred HC--CCCCCCEEEECCC---CCCCCCHHHHHHHCCCCEEEECC--CEEEEECCC-CCCE--EEEECCCCCCCCCCCHHHH
Q ss_conf 00--1244420100234---56421046889752674367445--126753267-6431--5762153566642101346
Q gi|254780927|r 253 AV--AMTGGDVILKMTD---SSLLKTVFKVMRQTGVDIDIIDE--GIRVRWNGE-KLRP--VDVITAPFPGFPTDLQAQF 322 (430)
Q Consensus 253 Aa--alt~g~i~i~n~~---~~~~~~~l~iL~~mGa~i~~~~~--~i~V~~~~~-~l~~--~di~~~~~pg~~~D~~p~l 322 (430)
|| ++.+..+++-+-+ .+++..-|+.|.++|++|+..++ .+.|.++.. .... ++|. |-++ ...++
T Consensus 169 aap~~~~~~~~~~~~~~~~Sr~y~e~TL~~l~~fGv~~~~~~~~~~~~v~g~~~L~~~~g~~~vp-----GD~S-SA~ff 242 (444)
T TIGR01356 169 AAPLALQAVGITIVGEPLKSRPYIEITLDLLGSFGVSVEREDDLRKIVVPGGQKLYGPPGDYDVP-----GDYS-SAAFF 242 (444)
T ss_pred HHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCEEEEEECCCCEEECCCCCEEEC-----CCCC-HHHHH
T ss_conf 84316888557882355575773899989874268078996250179988996476589856964-----8834-67899
Q ss_pred HHHHHCCCC-CEEEEEECCHH--HHH--HHH-HHHHCCCEEEEECC--------EEEEEC---CCCCEEEE---EEECC-
Q ss_conf 676313566-41673204656--756--678-89748858999789--------699988---89851015---66081-
Q gi|254780927|r 323 MAMMCCAAG-ISHITETIFEN--RFM--HVQ-ELVRLGARISLSGQ--------TARVEG---VQGLRGAP---VMATD- 381 (430)
Q Consensus 323 a~laa~A~G-~s~I~e~i~e~--R~~--~~~-eL~klG~~v~~~~d--------~l~I~G---~~~l~g~~---v~~~D- 381 (430)
+|+|+.+.+ ..+|++ +.++ |.. .+. -|++|||+|+.+.+ .++|+| +.+|+|-+ ++..|
T Consensus 243 laaaal~~~s~v~~~n-~~~~~~q~d~~~~~~vL~~MGa~i~~~~~~~~~E~~~~~~V~~vr~~~~lkg~~v~~~d~~~~ 321 (444)
T TIGR01356 243 LAAAALTGGSRVTVEN-LGENSTQGDKAIIIEVLEEMGADIEVEKQREDLEPVADVEVEGVRQASGLKGIKVPDIDMDDM 321 (444)
T ss_pred HHHHHHCCCCCEEEEC-CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCC
T ss_conf 9998625897079834-658895431799999998639869994452345505799984131078888512367776640
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCEECCCC----CCHHHHHHHCCCEEEEEC
Q ss_conf 899999999998549819992433011778----487889986697899951
Q gi|254780927|r 382 LRASVSLVIAALAAQGETEISRVYHLDRGF----ECLEKKLSRCGALIQRIK 429 (430)
Q Consensus 382 HRiaMa~~ia~L~a~g~~~I~~~~~i~ksy----p~f~~~L~~LGa~Ie~i~ 429 (430)
-=.+|.+|++|++|+|+|+|.|+++++.== --..+.|++||+++|-.+
T Consensus 322 ~D~~p~lA~la~fA~G~t~i~~~~~lR~KEsDRi~A~~~~L~klG~~~~E~~ 373 (444)
T TIGR01356 322 IDLLPTLAVLAAFAEGPTRITGAEELRVKESDRIAAIAEELRKLGVEVEEFE 373 (444)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 0089999999863799539931110221233248999999985693788506
No 20
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=99.85 E-value=9.2e-20 Score=148.20 Aligned_cols=289 Identities=20% Similarity=0.239 Sum_probs=185.3
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECC-CCCCCCCCCCCCCCCCEEEEEEECC--CCCCCCCCCC--CCCCHH
Q ss_conf 3320121234333210332245686148999502-4433333334346661135665044--4468733233--222015
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSK-GLRGTSYTFPKVSVGATQVMMMVAS--LSHGDTSIYN--AAREPE 202 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~-~l~g~~i~l~~~S~q~~s~lLlaA~--~a~G~t~I~~--~~~~P~ 202 (430)
+..+-...++++|++||++|+.+++.+.+...+. .+......++...++ +...+|+++ ..+|.+++.+ ...++.
T Consensus 34 ~~s~D~~~~i~~L~~LG~~i~~~~~~~~i~~~~~~~~~~~~~~l~~g~sg-t~~r~l~~~l~~~~~~v~l~G~~~l~~RP 112 (408)
T cd01554 34 LRGEDVLSTMQVLRDLGVEIEDKDGVITIQGVGMAGLKAPQNALNLGNSG-TAIRLISGVLAGADFEVELFGDDSLSKRP 112 (408)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCCCCCHHHCCCC-CCHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 90789999999999879989994899999946887556886540000473-13999999997689569974884116798
Q ss_pred HHHHHHHHHCCCCCCCCCCCC-C--EEECCCCCCCCCCCEECCCCHHCCH--HHHHCCCCCCCEEEECCCCCCC-CCHHH
Q ss_conf 998998750145443202443-2--1202554222234200143100001--0000012444201002345642-10468
Q gi|254780927|r 203 VVDLAHCLNSMGAKISGMGSS-T--ITIQGVTSLSGTRHRILPDRIEAGT--YAMAVAMTGGDVILKMTDSSLL-KTVFK 276 (430)
Q Consensus 203 i~~t~~~L~~~Gv~I~~~~~~-~--i~I~g~~~l~~~~~~V~~D~ssAa~--fl~Aaalt~g~i~i~n~~~~~~-~~~l~ 276 (430)
+..+++.|++||++|+..+.. . +.+.| .+.+..+.+.++.||-.. .+.||.+..++.+|.|...++. +-.++
T Consensus 113 ~~~l~~~L~~lGa~i~~~~~~~~~p~~~~~--~~~~~~~~~~~~~SsQ~~SalLlaa~~~~g~t~I~~~~s~pyv~~t~~ 190 (408)
T cd01554 113 MDRVTLPLKKMGASISGQEERDLPPLLKGG--KNLGPIHYEDPIASAQVKSALMFAALLAKGETVIIEAAKEPTINHTEN 190 (408)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCEEEEECC--CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHH
T ss_conf 499999999779889960896423553257--655763998898859999999999986589832034578873999999
Q ss_pred HHHHCCCCEEEECCC-EEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCH--HHHHHHHHHH
Q ss_conf 897526743674451-267532676431576215356664210--13466763135664167320465--6756678897
Q gi|254780927|r 277 VMRQTGVDIDIIDEG-IRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFE--NRFMHVQELV 351 (430)
Q Consensus 277 iL~~mGa~i~~~~~~-i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e--~R~~~~~eL~ 351 (430)
+|++||++|++.+.. +.|. ....+.+.+.. ++.|+ ..+++++++.++|.-+|++ +.. .+...++-|+
T Consensus 191 ~L~~fG~~i~~~~~~~~~i~-g~~~~~~~~~~------V~~D~s~A~~~l~aa~l~~g~v~i~~-~~~~~~~~~~l~iL~ 262 (408)
T cd01554 191 MLQTFGGHISVQGTKKIVVQ-GPQKLTGQKYV------VPGDISSAAFFLVAAAIAPGRLVLQN-VGINETRTGIIDVLR 262 (408)
T ss_pred HHHHCCCCCEECCCCEEEEC-CCCCCCCCCCC------CCCCHHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHH
T ss_conf 99965996320487289984-88666789888------98798999999999986799699917-897566799999999
Q ss_pred HCCCEEEEECCEEEEECCCCCEEEEEEECCH----HHHHHHHHHHHHCCCEEEEECCCEEC----CCCCCHHHHHHHCCC
Q ss_conf 4885899978969998889851015660818----99999999998549819992433011----778487889986697
Q gi|254780927|r 352 RLGARISLSGQTARVEGVQGLRGAPVMATDL----RASVSLVIAALAAQGETEISRVYHLD----RGFECLEKKLSRCGA 423 (430)
Q Consensus 352 klG~~v~~~~d~l~I~G~~~l~g~~v~~~DH----RiaMa~~ia~L~a~g~~~I~~~~~i~----ksyp~f~~~L~~LGa 423 (430)
+||++++..+|.+.+... .+++-+++..++ =..+.++++++.++|++.|.|.++++ .-.-.+.+.|+++|+
T Consensus 263 ~mG~~i~~~~~~i~v~~~-~l~~~~i~~~~~p~~~D~~p~lavla~~a~G~s~i~~~~~lr~KEsdR~~~~~~eL~~lG~ 341 (408)
T cd01554 263 AMGAKIEIGEDTISVESS-DLKATEICGALIPRLIDELPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGA 341 (408)
T ss_pred HCCCEEEECCCEEEEECC-CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEECCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 759989983986785469-9851550554488722379999999985658864141144303464089999999998799
Q ss_pred EEEEE
Q ss_conf 89995
Q gi|254780927|r 424 LIQRI 428 (430)
Q Consensus 424 ~Ie~i 428 (430)
++|.-
T Consensus 342 ~~~~~ 346 (408)
T cd01554 342 DIEPT 346 (408)
T ss_pred EEEEE
T ss_conf 79998
No 21
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=99.84 E-value=1.1e-19 Score=147.59 Aligned_cols=301 Identities=21% Similarity=0.283 Sum_probs=195.8
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC--CCCCCCCCCCCCCCCEEEEEEEC-CC-CCCC
Q ss_conf 21045305866333201212343332103322456861489995024--43333333434666113566504-44-4687
Q gi|254780927|r 116 GYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKG--LRGTSYTFPKVSVGATQVMMMVA-SL-SHGD 191 (430)
Q Consensus 116 ~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~--l~g~~i~l~~~S~q~~s~lLlaA-~~-a~G~ 191 (430)
|+..+. .-|..+-....++++++||++|+.+++. +.|+|.+ +.-..-.++.--++.+.-+|++. .+ .++.
T Consensus 38 g~s~i~----~~L~s~D~~~tl~a~~~lG~~i~~~~~~--~~v~g~g~~~~~~~~~l~~GnSGTt~R~l~glla~~~~~~ 111 (428)
T COG0128 38 GESTIT----NLLDSEDTLATLEALRALGARIEKEGDT--LVVRGTGGELKEPPAVLDCGNSGTTLRLLTGLLALGSPGE 111 (428)
T ss_pred CCEEEE----EEECCHHHHHHHHHHHHHCCEEECCCCE--EEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCE
T ss_conf 965994----3225686999999999708748855877--9996798875799744560562658999999996178970
Q ss_pred CCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCCC---CEEECCCCCCCCCCCEECCCCHHCCH--HHHHCC-CCCCCEEE
Q ss_conf 3323322--2015998998750145443202443---21202554222234200143100001--000001-24442010
Q gi|254780927|r 192 TSIYNAA--REPEVVDLAHCLNSMGAKISGMGSS---TITIQGVTSLSGTRHRILPDRIEAGT--YAMAVA-MTGGDVIL 263 (430)
Q Consensus 192 t~I~~~~--~~P~i~~t~~~L~~~Gv~I~~~~~~---~i~I~g~~~l~~~~~~V~~D~ssAa~--fl~Aaa-lt~g~i~i 263 (430)
+++.+.. .++.+..+++-|+++|++|+..+.+ -+.|.|. +.+..+.+.++-||+-. .+.+|. ..++.+.+
T Consensus 112 ~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~--~~~~~i~i~~~~SSq~vsslL~~a~l~~~~~~~~ 189 (428)
T COG0128 112 TVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG--LKGGEVEIDGPVSSQQVSSLLLLAPLLAEGTTII 189 (428)
T ss_pred EEEECCHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCEEEECC--CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99987832310976788999997796899468888678799778--7785289845650799999999876258983898
Q ss_pred E--CCCCCCCC-CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEEC
Q ss_conf 0--23456421-0468897526743674451267532676431576215356664210134667631356641-673204
Q gi|254780927|r 264 K--MTDSSLLK-TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGIS-HITETI 339 (430)
Q Consensus 264 ~--n~~~~~~~-~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p~la~laa~A~G~s-~I~e~i 339 (430)
. ++...+.+ .=++.|+++|++|+.....++|+++. ++.+.++.- ||-.+- ..+++++++.+.+.. ...+.+
T Consensus 190 ~~~~~~s~~yid~T~~mL~~FGv~v~~~~~~~~i~~g~-~~~~~~~~V---pgD~SS-AafflaAaai~~~~~~i~~~~v 264 (428)
T COG0128 190 VGGVLESKPYIDHTLDMLKAFGVEVENEGYRFYIPGGQ-KLTPGDYDV---PGDYSS-AAFFLAAAAITPRSTGITLKNV 264 (428)
T ss_pred ECCCCCCCCHHHHHHHHHHHCCCEEEEECCEEEECCCC-CCCCCEEEC---CCCHHH-HHHHHHHHHHCCCCCEEEECCC
T ss_conf 45756776679999999998698389604389988986-216754782---797266-9999999984278750450157
Q ss_pred C--HHHHHHHHHHHHCCCEEEEECCE-EEEECCCCCEEEEEEECC-HHHHHHHHHHHHHCCCEEEEECCCEECCCC----
Q ss_conf 6--56756678897488589997896-999888985101566081-899999999998549819992433011778----
Q gi|254780927|r 340 F--ENRFMHVQELVRLGARISLSGQT-ARVEGVQGLRGAPVMATD-LRASVSLVIAALAAQGETEISRVYHLDRGF---- 411 (430)
Q Consensus 340 ~--e~R~~~~~eL~klG~~v~~~~d~-l~I~G~~~l~g~~v~~~D-HRiaMa~~ia~L~a~g~~~I~~~~~i~ksy---- 411 (430)
. ..|...++-|++||++++..++. ++|.+...|+|-+|+..| -=.+|.++++|+.|+|+|+|.|+++++.==
T Consensus 265 ~~~~~~~~~~~vl~~MGa~i~~~~~~~l~V~~~~~l~gi~vd~~~~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi 344 (428)
T COG0128 265 QPNPTDKGILDVLEKMGADIEIGDDSVLRVRGSGELKGIEVDMDDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRI 344 (428)
T ss_pred CCCCCHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHCCHHHH
T ss_conf 76866048999999759917974683499962587567676754382278999999985479769976577320302479
Q ss_pred CCHHHHHHHCCCEEEEEC
Q ss_conf 487889986697899951
Q gi|254780927|r 412 ECLEKKLSRCGALIQRIK 429 (430)
Q Consensus 412 p~f~~~L~~LGa~Ie~i~ 429 (430)
--..+.|++||+++|..+
T Consensus 345 ~a~a~eL~klG~~v~e~~ 362 (428)
T COG0128 345 AAMATELRKLGVEVEETE 362 (428)
T ss_pred HHHHHHHHHCCCEEEECC
T ss_conf 999999996586778648
No 22
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro: IPR005750 The bacterial enzyme UDP-N-acetylglucosamine (UDP-GlcNAc) enolpyruvyltransferase (MurA) catalyzes the transfer of enolpyruvate from phosphoenolpyruvate to uridine diphospho-N-acetylglucosamine, which is the first committed step of bacterial cell wall biosynthesis. Experimental evidence suggests that binding of substrates to the enzyme does not exclusively follow an ordered mechanism with UDP-GlcNAc binding first, although binding of UDP-GlcNAc to free enzyme is preferred and possibly influenced by pyruvate-P. The reaction thus appears to follow an induced-fit mechanism, in which the binding site for fosfomycin, and presumably also for pyruvate-P, is created by the interaction of free enzyme with the sugar nucleotide. ; GO: 0016740 transferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process.
Probab=99.83 E-value=2.4e-19 Score=145.47 Aligned_cols=279 Identities=18% Similarity=0.255 Sum_probs=160.4
Q ss_pred CHHHHHHHHHHHCCCCCCCCC-CC-EEEEEECCCCCCCCCCCCCCCCCCE-EEEEEECCCCC-CC-CCCC---C-CCCCH
Q ss_conf 012123433321033224568-61-4899950244333333343466611-35665044446-87-3323---3-22201
Q gi|254780927|r 131 RPVDLFVDSLKSLGVVIKIDG-GY-VDARVSSKGLRGTSYTFPKVSVGAT-QVMMMVASLSH-GD-TSIY---N-AAREP 201 (430)
Q Consensus 131 RP~~~l~~~L~~lGa~i~~~~-g~-~p~~i~g~~l~g~~i~l~~~S~q~~-s~lLlaA~~a~-G~-t~I~---~-~~~~P 201 (430)
.-++.+++.|+.|||+++.++ +. +- |+...+.-.+.-.+.++ +.= |-++|-++++. |. ..+. + +--.+
T Consensus 48 ~DV~~~~~lL~~lGa~v~~~~~n~~~~--i~~~~~~~~~apy~~V~-kmRASilvLGPLLaR~g~Ga~V~LPGGCaIG~R 124 (443)
T TIGR01072 48 SDVKTMLELLRNLGARVEFDNPNEELE--INTPNINKTEAPYELVR-KMRASILVLGPLLARFGKGAKVSLPGGCAIGAR 124 (443)
T ss_pred CHHHHHHHHHHHCCCEEEEECCCEEEE--EECCCCCCEECCHHHHH-HHCHHHHHHHHHHHHCCCCCEECCCCCCCCCCC
T ss_conf 118999999985697999856865899--95574552107979975-404048776289762688637268888735799
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEECCC-CCCCCCCCEECCCCHHC-CH--HHHHCCCCCCCEEEECCCCCCCC-CHHH
Q ss_conf 59989987501454432024432120255-42222342001431000-01--00000124442010023456421-0468
Q gi|254780927|r 202 EVVDLAHCLNSMGAKISGMGSSTITIQGV-TSLSGTRHRILPDRIEA-GT--YAMAVAMTGGDVILKMTDSSLLK-TVFK 276 (430)
Q Consensus 202 ~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~-~~l~~~~~~V~~D~ssA-a~--fl~Aaalt~g~i~i~n~~~~~~~-~~l~ 276 (430)
.|+.=+.-|++||++|+..+ ..+..+.. .+|++.++. -|+.|. || -+.||++-.|+.+|+|+-.++.= =..+
T Consensus 125 PvD~H~~gL~~lGA~i~~~~-G~v~A~~~~~~L~G~~i~--lD~~SVGATEN~~mAA~LAeG~Tvi~NaA~EPEivDL~~ 201 (443)
T TIGR01072 125 PVDLHLKGLEALGAEITIED-GYVVASAEGGRLKGAHIV--LDKVSVGATENIIMAAVLAEGTTVIENAAREPEIVDLCE 201 (443)
T ss_pred CHHHHHHHHHHCCCEEEECC-CEEEEEECCCCCCEEEEE--CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
T ss_conf 76688998985598999816-399998508962215898--247656478998898852698469997148851899999
Q ss_pred HHHHCCCCEE-EECCCEEEEECCCC-CCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCHHHHHH-HHHHH
Q ss_conf 8975267436-74451267532676-431576215356664210--1346676313566416732046567566-78897
Q gi|254780927|r 277 VMRQTGVDID-IIDEGIRVRWNGEK-LRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFENRFMH-VQELV 351 (430)
Q Consensus 277 iL~~mGa~i~-~~~~~i~V~~~~~~-l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e~R~~~-~~eL~ 351 (430)
.|++|||+|+ ...+.|+|++.. + |++.+..--| |= .-+|..+||...|.-.|+ .+..+-+.. ...|+
T Consensus 202 ~L~~mGA~I~G~G~~~i~I~GV~-~~L~g~~h~iiP------DRIEAGTf~~AAA~T~G~~~~~-~v~p~hL~~~~~KL~ 273 (443)
T TIGR01072 202 FLNKMGAKIEGAGSSTITIEGVE-KDLHGTEHSIIP------DRIEAGTFLVAAAITRGEVLVK-NVDPDHLRAVLAKLR 273 (443)
T ss_pred HHHHCCCEEEEECCCEEEEEEEC-CCCCCEEEEECC------CHHHHHHHHEEEEEECCEEEEE-CCCHHHHHHHHHHHH
T ss_conf 99857978965358788998540-557753178838------6567866530023365817994-578789999999998
Q ss_pred HCCCEEEEECCEEEEECC--------CCCEEEEEEE-------CCHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHH
Q ss_conf 488589997896999888--------9851015660-------8189999999999854981999243301177848788
Q gi|254780927|r 352 RLGARISLSGQTARVEGV--------QGLRGAPVMA-------TDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEK 416 (430)
Q Consensus 352 klG~~v~~~~d~l~I~G~--------~~l~g~~v~~-------~DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~ 416 (430)
.||+++++++|++.|... +.+++-+|++ +|--.=|.. ....|+|.+.|++ -|...==-|++
T Consensus 274 e~G~~~~~~~~~~~v~~~~~L~V~~D~~~k~v~i~T~pyPGFPTDlQaqf~a--Ll~~a~G~SvI~E--tvFEnRf~Hv~ 349 (443)
T TIGR01072 274 EIGAEVEVDENSIRVDMRQDLKVKLDKRLKAVDIETLPYPGFPTDLQAQFMA--LLSQAEGTSVITE--TVFENRFMHVD 349 (443)
T ss_pred HCCCEEEEECCEEEEEECCCEEEEECCCCCCEEECCCCCCCCCCCHHHHHHH--HHHHCCCEEEEEC--CCCCCHHHHHH
T ss_conf 6496799977889998558627975588888042378889888735699999--9854685179953--77522456668
Q ss_pred HHHHCCCEEEE
Q ss_conf 99866978999
Q gi|254780927|r 417 KLSRCGALIQR 427 (430)
Q Consensus 417 ~L~~LGa~Ie~ 427 (430)
.|+++||+|+.
T Consensus 350 EL~RMGA~I~~ 360 (443)
T TIGR01072 350 ELIRMGADIKL 360 (443)
T ss_pred HHHCCCCCEEE
T ss_conf 98307980899
No 23
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.83 E-value=9.9e-19 Score=141.49 Aligned_cols=286 Identities=22% Similarity=0.312 Sum_probs=166.0
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC---CCCCCCCCCCCCEEEEEEE-CCCCCCCCCCCCC--CCCH
Q ss_conf 33201212343332103322456861489995024433---3333343466611356650-4444687332332--2201
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRG---TSYTFPKVSVGATQVMMMV-ASLSHGDTSIYNA--AREP 201 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g---~~i~l~~~S~q~~s~lLla-A~~a~G~t~I~~~--~~~P 201 (430)
...+-+...+++|++||++|+.+++.+. |.+.+..+ ....++.--++.+.-+|+. +....+.+++.+- -.++
T Consensus 46 ~~~~Dv~~~~~~l~~lG~~i~~~~~~~~--i~~~~~~~~~~~~~~i~~g~SGt~~R~l~~lla~~~~~~~l~G~~~l~~R 123 (424)
T PRK02427 46 LDSEDTLATLEALRALGARIEEDGDELE--VEGVGLGGLKEPEAVLDCGNSGTTMRLLAGLLALQPGEVVLTGDESLRKR 123 (424)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCEEE--EECCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEECCHHHCCC
T ss_conf 9039999999999987998999499999--98278777668722055146644177676775268956999787010578
Q ss_pred HHHHHHHHHHCCCCCCCCCCCC-C--EEECCCCCCCCCCCEECCCCHH--CCHHHHHCC-CCCCCEEEE-CCCC-CCCCC
Q ss_conf 5998998750145443202443-2--1202554222234200143100--001000001-244420100-2345-64210
Q gi|254780927|r 202 EVVDLAHCLNSMGAKISGMGSS-T--ITIQGVTSLSGTRHRILPDRIE--AGTYAMAVA-MTGGDVILK-MTDS-SLLKT 273 (430)
Q Consensus 202 ~i~~t~~~L~~~Gv~I~~~~~~-~--i~I~g~~~l~~~~~~V~~D~ss--Aa~fl~Aaa-lt~g~i~i~-n~~~-~~~~~ 273 (430)
.+..+++.|++||++|+..... . +.|.|.. .+..+.+..|.|| +...+.+|+ +.+|..++. +... ...+.
T Consensus 124 Pi~~l~~~L~~lGa~i~~~~~~~~lP~~i~g~~--~~~~~~i~~~~sSq~vs~lll~A~l~~~g~t~i~~~~~s~pyi~~ 201 (424)
T PRK02427 124 PMGRLVDPLRQMGAKIEGREEGYRLPLTIRGPK--KGGPIEYDGPVSSQFVKSLLLLAPLAAEGTTIVIEPLPSRPHTEI 201 (424)
T ss_pred CCHHHHHHHHHCCCEEEECCCCEEEEEEEECCC--CCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 710689999977999996578435435767477--776579922657575543455213227970798157677367999
Q ss_pred HHHHHHHCCCCEEEEC-CCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCC-CEEEEEECCH--HHH--H
Q ss_conf 4688975267436744-51267532676431576215356664210--1346676313566-4167320465--675--6
Q gi|254780927|r 274 VFKVMRQTGVDIDIID-EGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAG-ISHITETIFE--NRF--M 345 (430)
Q Consensus 274 ~l~iL~~mGa~i~~~~-~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G-~s~I~e~i~e--~R~--~ 345 (430)
.+++|++||++|+..+ +.++|.+. ..+.+.++.- +.|+ ..+++++++.++| .-+|++ +.. .|- .
T Consensus 202 T~~~L~~~G~~I~~~~~~~i~I~g~-~~l~~~~~~V------~~D~s~A~~~l~aaal~~g~~i~i~~-~~~~~~q~d~~ 273 (424)
T PRK02427 202 TLRMLRAFGVEVDDVDGRRFTVKGG-QRLKGPDITV------PGDISSAAFFLAAAAITPGSEVTITN-VGLNPTQGGKA 273 (424)
T ss_pred HHHHHHHCCCEEEECCCCEEEECCC-CCCCCCCCCC------CCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCCCCHH
T ss_conf 9999986896499628819997787-5446655769------98988999999999975898699917-77665655189
Q ss_pred HHHHHHHCCCEEEEECCEEEEEC-CCCCEEEEEEEC---CHHHHHHHHHHHHHCCCEEEEECCCEECC----CCCCHHHH
Q ss_conf 67889748858999789699988-898510156608---18999999999985498199924330117----78487889
Q gi|254780927|r 346 HVQELVRLGARISLSGQTARVEG-VQGLRGAPVMAT---DLRASVSLVIAALAAQGETEISRVYHLDR----GFECLEKK 417 (430)
Q Consensus 346 ~~~eL~klG~~v~~~~d~l~I~G-~~~l~g~~v~~~---DHRiaMa~~ia~L~a~g~~~I~~~~~i~k----syp~f~~~ 417 (430)
.++-|++||++++..++.+.+.. ..+|+|-+++.. | .++.+++++..++|+++|.|+++.+- =.-.+.+.
T Consensus 274 ~l~iL~~mGa~i~~~~~~~~~~~~~~~L~~i~id~~~~pD--l~p~la~la~~a~G~s~i~~i~~lR~KESdRi~~~~~e 351 (424)
T PRK02427 274 ILDVLEKMGADIEWGDDREEGEPVSGELKGIDIDIPDIID--EAPTLAVLAAFAEGTTVIRNAEELRVKETDRIAAMATE 351 (424)
T ss_pred HHHHHHHCCCEEEEECCEEEEEECCCCCCCEEECCCCCCC--HHHHHHHHHHHCCCCCEEECCHHHCCCCCHHHHHHHHH
T ss_conf 9999998699899947807997548887647833888960--78999999983899836852134114013079999999
Q ss_pred HHHCCCEEEE
Q ss_conf 9866978999
Q gi|254780927|r 418 LSRCGALIQR 427 (430)
Q Consensus 418 L~~LGa~Ie~ 427 (430)
|+++|++|+.
T Consensus 352 L~k~G~~i~~ 361 (424)
T PRK02427 352 LRKLGAEVEE 361 (424)
T ss_pred HHHCCCEEEE
T ss_conf 9977998999
No 24
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.83 E-value=7.8e-19 Score=142.14 Aligned_cols=311 Identities=16% Similarity=0.206 Sum_probs=178.8
Q ss_pred EEEEECC-CCE---EEEEECCCCHHHHHHHHH-HHHHCCCCEEEECCCCHH--HHHHHHHHHHHCCCEEEEECCCCEEEE
Q ss_conf 3898279-731---378976964668999999-997469969998698369--999999999974989999277411420
Q gi|254780927|r 3 RIKIIGG-NKL---NGTIAISGAKNASLPVMI-ASLLTSETLTLENIPDLA--DVKLLIRILRSHGVEILSDSSYNDQNK 75 (430)
Q Consensus 3 ~l~V~g~-~~L---~G~i~vpgSKs~s~Ral~-aaaLa~g~s~i~n~~~s~--D~~~~~~~l~~lG~~i~~~~~~~~~~~ 75 (430)
.+.|+|. .++ ..++.. |.---+.|.|+ ++++.++.+++.+-.... =....++.|++||++|++..+..
T Consensus 73 ~~~I~G~g~~~~~~~~~l~~-GnSGTt~RlL~glla~~~~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~~~g---- 147 (662)
T PRK11860 73 TVRITGLGGQLPVKKADLFL-GNAGTAMRPLTAALALLGGEFELSGVPRMHERPIGDLVDALRQLGCRIDYLGNEG---- 147 (662)
T ss_pred EEEEEECCCCCCCCCCEEEC-CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHCCCEEEEECCCC----
T ss_conf 89999078887899865773-7847899999999985998399987631100972899999998799699826899----
Q ss_pred CCCCEEEEECCCCCC---CCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHH-HHHHHHHCCCCCCCCC
Q ss_conf 245259994366658---644402343113211022533233321045305866333201212-3433321033224568
Q gi|254780927|r 76 SYSSTMHFRCRHIVD---LTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDL-FVDSLKSLGVVIKIDG 151 (430)
Q Consensus 76 ~~~~~~~~~~~~~~~---~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~-l~~~L~~lGa~i~~~~ 151 (430)
..++.+.+..... ...++......=++++|..|+++......+...| .+-+||.-. -++.|++||++++.++
T Consensus 148 --~~Pl~I~g~~~~~~g~i~i~~~~SSQ~iSaLLlaapl~~~g~~~~ie~~~--~~~Srpy~e~Tl~~L~~fGi~v~~~~ 223 (662)
T PRK11860 148 --FPPLRIRPASLKLDAPIRVRGDVSSQFLTALLMALPLVAAGQDIVIEVVG--ELISKPYIEITLNLLARFGIAVQREG 223 (662)
T ss_pred --CCCEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECC--CCCCCCHHHHHHHHHHHCCCEEEECC
T ss_conf --76558847853689714525650689999999862653279836998488--65887779999999997794799538
Q ss_pred CCEEEEEE-CCCC-CCCCCCCC--CCCCCCEEEEEEECCCCCC---CCCCCCCCCCHHHH--HHHHHHHCCCCCCCCCCC
Q ss_conf 61489995-0244-33333334--3466611356650444468---73323322201599--899875014544320244
Q gi|254780927|r 152 GYVDARVS-SKGL-RGTSYTFP--KVSVGATQVMMMVASLSHG---DTSIYNAAREPEVV--DLAHCLNSMGAKISGMGS 222 (430)
Q Consensus 152 g~~p~~i~-g~~l-~g~~i~l~--~~S~q~~s~lLlaA~~a~G---~t~I~~~~~~P~i~--~t~~~L~~~Gv~I~~~~~ 222 (430)
..- ..+. ++.+ .+.+|+.| .+|+.| ++-+|+++.| ..+|.|....|.-- ..++.|++||++|++.+
T Consensus 224 ~~~-~~i~~g~~~~~~~~~~VpgD~SSAAf---flaaaai~~~~~~~I~i~~v~~ns~qgd~~~l~iL~~MGa~i~~~~- 298 (662)
T PRK11860 224 WQR-FTIPAGSRYRSPGTIHVEADASSASY---FIALGAIAGGAQEGIRIEGVGADSIQGDIRFVEAARAMGARVTGGP- 298 (662)
T ss_pred CCE-EEEECCCCCCCCCCEECCCCCHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECC-
T ss_conf 808-99808951258860576898117899---9999997189988079816888887553799999998699799059-
Q ss_pred CCEEEC-CCCCCCCCCCE--ECCCCHHCCHHHHHCCCCCCCEEEECCC----CCCCC--CHHHHHHHCCCCEEEECCCEE
Q ss_conf 321202-55422223420--0143100001000001244420100234----56421--046889752674367445126
Q gi|254780927|r 223 STITIQ-GVTSLSGTRHR--ILPDRIEAGTYAMAVAMTGGDVILKMTD----SSLLK--TVFKVMRQTGVDIDIIDEGIR 293 (430)
Q Consensus 223 ~~i~I~-g~~~l~~~~~~--V~~D~ssAa~fl~Aaalt~g~i~i~n~~----~~~~~--~~l~iL~~mGa~i~~~~~~i~ 293 (430)
+.+.|. +...+++.++. -.||- +-...++|+...|+.+|+|+. .+++| ++.+-|++||++++..+|++.
T Consensus 299 ~~~~v~~~~~~L~gi~id~~~iPD~--~PiLavlAa~A~G~T~i~g~~~LR~KESDRI~am~~eL~klGv~v~e~~Dgl~ 376 (662)
T PRK11860 299 NWLEVRRGAWPLKAIDLDCNHIPDA--AMTLAVMALYADGTTTLRNIASWRVKETDRIAAMACELRKLGATVEEGADYIR 376 (662)
T ss_pred CEEEEECCCCCCCEEEECHHHCCCH--HHHHHHHHHHCCCCEEEECHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCEEE
T ss_conf 7599950576763276462218707--89999999858997166584786311057899999999974987997288799
Q ss_pred EEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCC-CEEEE
Q ss_conf 7532676431576215356664210--1346676313566-41673
Q gi|254780927|r 294 VRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAG-ISHIT 336 (430)
Q Consensus 294 V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G-~s~I~ 336 (430)
|.+.. .+++..+++-. |. .+.|++++..+.| +.+|.
T Consensus 377 I~g~~-~l~g~~i~s~~------DHRIAMafavagL~~~~~~v~I~ 415 (662)
T PRK11860 377 VTPPA-DWKAAAIHTYD------DHRMAMCFSLAAFNPARLPVRIL 415 (662)
T ss_pred EECCC-CCCCCEECCCC------CHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 97888-78676541778------86999999999835689957984
No 25
>pfam00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase).
Probab=99.80 E-value=2.1e-18 Score=139.41 Aligned_cols=290 Identities=18% Similarity=0.221 Sum_probs=184.8
Q ss_pred CCCCHHHHHHHHHHHCCCCCCC-CCCCEEEEEECCCC---CCCCCCCCCCCCCCEEEEEEE-CCCCCCCCCCCC--CCCC
Q ss_conf 3320121234333210332245-68614899950244---333333343466611356650-444468733233--2220
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKI-DGGYVDARVSSKGL---RGTSYTFPKVSVGATQVMMMV-ASLSHGDTSIYN--AARE 200 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~-~~g~~p~~i~g~~l---~g~~i~l~~~S~q~~s~lLla-A~~a~G~t~I~~--~~~~ 200 (430)
+..+-+...+++|++||++++. +++..-+.+.+... .+-...++...++.+--+|++ +....+.+++.+ -..+
T Consensus 40 ~~s~Dv~~~~~~l~~lG~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~Sgt~lr~L~~~~~~~~~~~~l~G~~~L~~ 119 (415)
T pfam00275 40 LDSDDTRLMLEALRALGAEVIELDEEKTVVIVEGLGGSFEAPYELVLDLGNSGTAMRPLLGRLALQSGEVVLTGDDSIGE 119 (415)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 90799999999999879989998899679997899975459878877513289999999999806995598418733468
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-C--EEECCCCCCCCCCCEECCCCHHCC--H-HHHHCCCCCCCEEEECCCCCC-CCC
Q ss_conf 15998998750145443202443-2--120255422223420014310000--1-000001244420100234564-210
Q gi|254780927|r 201 PEVVDLAHCLNSMGAKISGMGSS-T--ITIQGVTSLSGTRHRILPDRIEAG--T-YAMAVAMTGGDVILKMTDSSL-LKT 273 (430)
Q Consensus 201 P~i~~t~~~L~~~Gv~I~~~~~~-~--i~I~g~~~l~~~~~~V~~D~ssAa--~-fl~Aaalt~g~i~i~n~~~~~-~~~ 273 (430)
+.+..+++.|++||++|+..+.. . +.|.|. +...+.+..+.||.. . .++|+.+..|+.++.|...++ ..-
T Consensus 120 RP~~~l~~~L~~lGa~i~~~~~~~~~pi~i~~~---~~~~~~i~~~~sSq~~s~lll~a~~~~~g~t~i~~~~s~pyv~~ 196 (415)
T pfam00275 120 RPIDRLLDGLRQLGAEIEYREGYGYAPLKVRGL---KLGGVHIDGSISSQFVTSLLMLAALLAEGTTIIENLASEPYIDD 196 (415)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC---CCCCEEEECCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCEEHH
T ss_conf 972799999998798899942531122211389---98667996256779998899988871898131236788868199
Q ss_pred HHHHHHHCCCCEEEECC--CEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCHH--HH--H
Q ss_conf 46889752674367445--1267532676431576215356664210--134667631356641673204656--75--6
Q gi|254780927|r 274 VFKVMRQTGVDIDIIDE--GIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFEN--RF--M 345 (430)
Q Consensus 274 ~l~iL~~mGa~i~~~~~--~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e~--R~--~ 345 (430)
-+++|++||++|++.++ .++|.+. ..+.+.++.-- .|+ ..+++++++...|.-+|++ +..+ |- .
T Consensus 197 T~~~L~~~G~~i~~~~~~~~i~I~g~-~~~~~~~~~V~------~D~ssAa~~l~aa~l~~g~i~i~~-~~~~~~q~d~~ 268 (415)
T pfam00275 197 TENMLNKFGAKIEGSGTETSIYIKGG-QKLPGVEYRVE------GDRSSAAYFLAAAAITGGTVKVEN-VGINSLQGDRA 268 (415)
T ss_pred HHHHHHHCCCEEEECCCCCEEEEECC-CCCCCCCCCCC------CCHHHHHHHHHHHHHCCCEEEEEC-CCCCCCCCHHH
T ss_conf 99999976976897288768999277-44555664247------888899999999986698499947-76433523599
Q ss_pred HHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEECC-HHHHHHHHHHHHHCCCEEEEECCCEEC-CCCCC---HHHHHHH
Q ss_conf 678897488589997896999888985101566081-899999999998549819992433011-77848---7889986
Q gi|254780927|r 346 HVQELVRLGARISLSGQTARVEGVQGLRGAPVMATD-LRASVSLVIAALAAQGETEISRVYHLD-RGFEC---LEKKLSR 420 (430)
Q Consensus 346 ~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~D-HRiaMa~~ia~L~a~g~~~I~~~~~i~-ksyp~---f~~~L~~ 420 (430)
.++-|++||++++..++..++.++..+++..++..| .=.++.+++++..++|.+.+.|+++++ |=|.+ +.+.|++
T Consensus 269 ~l~iL~~mG~~i~~~~~~~~~~~~~~l~~~~~d~~~~pD~~p~la~~a~~a~g~t~~~g~~~lr~KEsdRi~~~~~eL~k 348 (415)
T pfam00275 269 ADEILEKMGAEITQGEDSDIVVGPPGLRGIDVDMNTAPDPAPTTAVQAAFAEGTSRIEGISELRVKETDRLFAMATELRK 348 (415)
T ss_pred HHHHHHHCCCEEEECCCCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECHHHHHHHHHHH
T ss_conf 99999988996996488289996678874036656587615579999986513321155406899997109999999998
Q ss_pred CCCEEEEE
Q ss_conf 69789995
Q gi|254780927|r 421 CGALIQRI 428 (430)
Q Consensus 421 LGa~Ie~i 428 (430)
+|++++.-
T Consensus 349 lG~~i~~~ 356 (415)
T pfam00275 349 LGAEVEEG 356 (415)
T ss_pred CCCEEEEE
T ss_conf 79979997
No 26
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=1.4e-17 Score=133.90 Aligned_cols=279 Identities=19% Similarity=0.240 Sum_probs=128.8
Q ss_pred HHHHHHHHHHCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC-CCCCCC---CC-CCCHHHHHH
Q ss_conf 2123433321033224568-61489995024433333334346661135665044446-873323---32-220159989
Q gi|254780927|r 133 VDLFVDSLKSLGVVIKIDG-GYVDARVSSKGLRGTSYTFPKVSVGATQVMMMVASLSH-GDTSIY---NA-AREPEVVDL 206 (430)
Q Consensus 133 ~~~l~~~L~~lGa~i~~~~-g~~p~~i~g~~l~g~~i~l~~~S~q~~s~lLlaA~~a~-G~t~I~---~~-~~~P~i~~t 206 (430)
+..+++.|+.||++++.++ +. +.+....+.....-.+..+.-=-|-++|.++++. |.-.+. +. .-.+.++.-
T Consensus 50 V~~~~~ll~~lG~~v~~~~~~~--~~i~~~~i~~~~apy~~v~kmRASi~vlGplLaR~g~a~V~LPGGCaIG~RPvDlH 127 (421)
T COG0766 50 VETMLELLRNLGAKVERDGDGE--LEIDAPNINSTEAPYELVRKMRASILVLGPLLARFGKAKVSLPGGCAIGARPVDLH 127 (421)
T ss_pred HHHHHHHHHHCCCEEEECCCCE--EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHH
T ss_conf 9999999997197799826826--99716532456699899987774999887888534956878898766788744579
Q ss_pred HHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCHHCC-H--HHHHCCCCCCCEEEECCCCCCCC-CHHHHHHHCC
Q ss_conf 987501454432024432120255422223420014310000-1--00000124442010023456421-0468897526
Q gi|254780927|r 207 AHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEAG-T--YAMAVAMTGGDVILKMTDSSLLK-TVFKVMRQTG 282 (430)
Q Consensus 207 ~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~ssAa-~--fl~Aaalt~g~i~i~n~~~~~~~-~~l~iL~~mG 282 (430)
++-|+++|++|+..+ .++.....+.|++.++. -|+.|.. + .+.||.+..|+-.|.|.-.++-= -..+.|.+||
T Consensus 128 l~gleaLGA~i~~e~-g~i~a~a~~~L~G~~I~--ld~~SVGATenimmAA~lA~G~TvIeNAA~EPEIvDLa~~Ln~MG 204 (421)
T COG0766 128 LKGLEALGAEIEIEH-GYIEASAPKGLKGAHIY--LDKVSVGATENIMMAAVLAEGTTVIENAAREPEIVDLANFLNKMG 204 (421)
T ss_pred HHHHHHCCCEEEECC-CEEEEECCCCCCCEEEE--ECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 999997699899728-88999746873001899--068755588999999986698489820256825899999999748
Q ss_pred CCEEEECC-CEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEE
Q ss_conf 74367445-1267532676431576215356664210--13466763135664167320465675667889748858999
Q gi|254780927|r 283 VDIDIIDE-GIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISL 359 (430)
Q Consensus 283 a~i~~~~~-~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e~R~~~~~eL~klG~~v~~ 359 (430)
|+|+-.+. .|++++-. ++++.+.+--| |- .-+++++||...|.-.+++..++.=-.....|+.||+++++
T Consensus 205 A~I~GaGT~~I~I~GV~-~L~g~~h~Vip------DRIEAGT~~~aaA~tgg~v~i~~v~~~hl~~~~~kL~e~G~~~~~ 277 (421)
T COG0766 205 AKIEGAGTSTITIEGVE-KLHGAEHSVIP------DRIEAGTFLVAAAITGGDVTIENVRPEHLEAVLAKLREAGVDIEE 277 (421)
T ss_pred CEEEECCCCEEEEECCC-CCCCCEEEECC------CHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 82687687739996604-55670566357------331387999999994894799078989999999999984980796
Q ss_pred ECCEEEEECC-CCCEEEEEEE-------CCHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHCCCEEEE
Q ss_conf 7896999888-9851015660-------818999999999985498199924330117784878899866978999
Q gi|254780927|r 360 SGQTARVEGV-QGLRGAPVMA-------TDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRCGALIQR 427 (430)
Q Consensus 360 ~~d~l~I~G~-~~l~g~~v~~-------~DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~LGa~Ie~ 427 (430)
++|++.|... ..+++-++++ +|...-|.. +.+.++|.+.|.+ -|.-.-=.|++.|.++||+|+.
T Consensus 278 ~~~~i~v~~~~~~~k~v~i~T~p~PGFpTDmQaqf~~--L~~~a~G~s~I~E--tifEnRf~hv~EL~RmGA~i~~ 349 (421)
T COG0766 278 GEDGIRVDMEGKRLKAVDIKTLPYPGFPTDMQAQFMA--LLTVAEGTSVITE--TIFENRFMHVPELIRMGANIKL 349 (421)
T ss_pred CCCEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHH--HHHHCCCCEEEEE--EECHHHHHHHHHHHHCCCCEEE
T ss_conf 2885999656777886233058999996037899999--9865678469987--4316554308999866896399
No 27
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.77 E-value=2.1e-17 Score=132.91 Aligned_cols=309 Identities=18% Similarity=0.240 Sum_probs=167.7
Q ss_pred CEEEECCCCCCCCCCHH---------------------HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 10453058663332012---------------------123433321033224568614899950244333333343466
Q gi|254780927|r 117 YARISLPGGCAIGTRPV---------------------DLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSV 175 (430)
Q Consensus 117 ~~~v~l~G~~~l~~RP~---------------------~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g~~i~l~~~S~ 175 (430)
++.|.+|||.||.-|-+ .--+++|++||++|+.+++..-+...+++++.-...++.--+
T Consensus 252 ~G~I~vPGDKSISHRalilaaLA~G~s~I~n~L~seD~~~Ti~alr~LGv~I~~~~~~~vv~g~~g~~~~p~~~ld~GNS 331 (673)
T PRK11861 252 QGTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRDGGTCVVGGTRGAFTAKTADLFLGNA 331 (673)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCEEEECCC
T ss_conf 05786698610899999999862898899568876789999999998398899819999997898876899860560585
Q ss_pred CCEEEEEEEC-CCCCCCCCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCC---CCEEECCCCCCCCCCCEECCCCHHCC-
Q ss_conf 6113566504-4446873323322--201599899875014544320244---32120255422223420014310000-
Q gi|254780927|r 176 GATQVMMMVA-SLSHGDTSIYNAA--REPEVVDLAHCLNSMGAKISGMGS---STITIQGVTSLSGTRHRILPDRIEAG- 248 (430)
Q Consensus 176 q~~s~lLlaA-~~a~G~t~I~~~~--~~P~i~~t~~~L~~~Gv~I~~~~~---~~i~I~g~~~l~~~~~~V~~D~ssAa- 248 (430)
|.+.-+|+.. ...++.+++.+-. +++...-+++-|++||++|+..++ --+.|.|...-......+.++.||..
T Consensus 332 GTt~RLL~Glla~~~~~~~ltGD~SL~kRPM~rvi~pL~~mGA~I~~~~~~G~~Pl~I~g~~~~~~~~i~~~~~~SSQ~~ 411 (673)
T PRK11861 332 GTAVRPLTAALAVNGGEYRIHGVPRMHERPIGDLVDGLRQIGARIDYEGNEGFPPLRIRPATISVDAPIRVRGDVSSQFL 411 (673)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEECCCCCCCCCEECCCCCHHHHH
T ss_conf 06899999999679974999887677649867999999977993997789996877986775577872221685419999
Q ss_pred -HHHH-HCCCC--CCC--EEEEC--CCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf -1000-00124--442--01002--34564210468897526743674451267532676-4315762153566642101
Q gi|254780927|r 249 -TYAM-AVAMT--GGD--VILKM--TDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK-LRPVDVITAPFPGFPTDLQ 319 (430)
Q Consensus 249 -~fl~-Aaalt--~g~--i~i~n--~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~-l~~~di~~~~~pg~~~D~~ 319 (430)
+.+. ++++. ++. +.+.. +..+....-++.|+++|++++..+....+...+.+ ..+.++. .|+-+ --.
T Consensus 412 SalLla~~~l~a~~~~~viei~~~~~srp~~e~TlrmL~~fGi~v~~~g~~~~~i~~g~~~~~~~~i~---VpgD~-SSA 487 (673)
T PRK11861 412 TALLMTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVERDGWQRFTVPAGVRYRSPGTIM---VEGDA-SSA 487 (673)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCCEE---CCCCH-HHH
T ss_conf 99999988863579952998478217877399999999977948995498589977984026888525---79974-668
Q ss_pred HHHHHHHHCCCCCEEEEEE-CCHHH--HHHHHHHHHCCCEEEEECCEEEEECC----CCCEEEEEEECCH-HHHHHHHHH
Q ss_conf 3466763135664167320-46567--56678897488589997896999888----9851015660818-999999999
Q gi|254780927|r 320 AQFMAMMCCAAGISHITET-IFENR--FMHVQELVRLGARISLSGQTARVEGV----QGLRGAPVMATDL-RASVSLVIA 391 (430)
Q Consensus 320 p~la~laa~A~G~s~I~e~-i~e~R--~~~~~eL~klG~~v~~~~d~l~I~G~----~~l~g~~v~~~DH-RiaMa~~ia 391 (430)
.++.++++...+..+|++. ..+.| .+.++-|++||++++..++.+.+.|. ..|+|.+++..+- =....++++
T Consensus 488 AFfiaAa~l~gs~i~i~nv~~n~trgd~g~l~iL~~MGa~I~~~~~~~~v~~i~~~~~~l~~i~i~~~~ipDe~PiLaVa 567 (673)
T PRK11861 488 SYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIEVRGIGHDHGRLAPIDMDFNLIPDAAMTIAVA 567 (673)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999983779966984357888854058999999869946965872685133356676467325813397479999999
Q ss_pred HHHCCCEEEEECCCEECCCC----CCHHHHHHHCCCEEEEEC
Q ss_conf 98549819992433011778----487889986697899951
Q gi|254780927|r 392 ALAAQGETEISRVYHLDRGF----ECLEKKLSRCGALIQRIK 429 (430)
Q Consensus 392 ~L~a~g~~~I~~~~~i~ksy----p~f~~~L~~LGa~Ie~i~ 429 (430)
+..|+|+|+|.|++.++.== --..+.|+++|+++|..+
T Consensus 568 Aa~A~G~T~i~ga~eLRvKESDRI~am~~~L~~lGv~vee~~ 609 (673)
T PRK11861 568 ALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEEGA 609 (673)
T ss_pred HHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 996899789878436350432899999999997699899828
No 28
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=98.94 E-value=1.5e-08 Score=75.13 Aligned_cols=162 Identities=22% Similarity=0.198 Sum_probs=113.4
Q ss_pred HHHHHCCCCCCCEEEECCCCCCC----C----CHHHHHHHC-CCCEEEE---CCCEEEEECCCCCCEEEEECCC-CCCCC
Q ss_conf 10000012444201002345642----1----046889752-6743674---4512675326764315762153-56664
Q gi|254780927|r 249 TYAMAVAMTGGDVILKMTDSSLL----K----TVFKVMRQT-GVDIDII---DEGIRVRWNGEKLRPVDVITAP-FPGFP 315 (430)
Q Consensus 249 ~fl~Aaalt~g~i~i~n~~~~~~----~----~~l~iL~~m-Ga~i~~~---~~~i~V~~~~~~l~~~di~~~~-~pg~~ 315 (430)
+.++.+++++..|+|.|+..+.. + .+++.++++ +++++.. ...++..+ ..+.+.++..+. ..|-.
T Consensus 15 ~alaLSaltgkpvrI~nIRa~R~~PGL~~QHl~~l~ll~~i~~a~v~g~~~gSt~l~F~P--g~i~gG~~~~d~gTAgSi 92 (211)
T cd01553 15 SFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRP--GTVRGGDVRFAIGSAGSC 92 (211)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEC--CCCCCCEEEEECCCCHHH
T ss_conf 999999974898899985379989885799999999999970877950055966999979--864486699966874209
Q ss_pred CCCHHHHHHHHHCCCCCEEEEEE-----CCH-----HHHHHHHHHHHCCCEEEEECC------------EEEEECCCCCE
Q ss_conf 21013466763135664167320-----465-----675667889748858999789------------69998889851
Q gi|254780927|r 316 TDLQAQFMAMMCCAAGISHITET-----IFE-----NRFMHVQELVRLGARISLSGQ------------TARVEGVQGLR 373 (430)
Q Consensus 316 ~D~~p~la~laa~A~G~s~I~e~-----i~e-----~R~~~~~eL~klG~~v~~~~d------------~l~I~G~~~l~ 373 (430)
+.++..+..++.||++.+.++-+ -|. .|.-+...|+|||++++++-. .+.|++.+.|+
T Consensus 93 ~LvlQ~lLp~~lfa~~~~~ltl~GGTnv~~sPsiDy~~~V~lP~L~r~G~~~~~~~~rrG~yP~GGG~v~~~v~Pv~~Lk 172 (211)
T cd01553 93 TDVLQTILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAGGGVVATEVSPVEKLN 172 (211)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEEEHHHCC
T ss_conf 99999999999748997499997403999898989999999999998199679999865604389828999997758768
Q ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 015660818999999999985498199924330117784878899866
Q gi|254780927|r 374 GAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRC 421 (430)
Q Consensus 374 g~~v~~~DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~L 421 (430)
+.++ |+.|.+.+++ .++.+....|.++.|++.|+.+++|
T Consensus 173 ~~~~-----~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~ 211 (211)
T cd01553 173 TAQL-----RQLVLPMLLA----SGAVEFTVAHPSCHLLTNFAVLEAL 211 (211)
T ss_pred CCCC-----HHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf 2232-----7888878987----0724788637744554435676249
No 29
>KOG0692 consensus
Probab=97.79 E-value=0.00016 Score=48.96 Aligned_cols=286 Identities=19% Similarity=0.259 Sum_probs=126.9
Q ss_pred CCCCHHHHHHHHHHHCCCCCCC-CCCCEEEEEECCC--CC---CC--CCCCCCCC--CCCEEEEEEECCCCCC--CC-CC
Q ss_conf 3320121234333210332245-6861489995024--43---33--33334346--6611356650444468--73-32
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKI-DGGYVDARVSSKG--LR---GT--SYTFPKVS--VGATQVMMMVASLSHG--DT-SI 194 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~-~~g~~p~~i~g~~--l~---g~--~i~l~~~S--~q~~s~lLlaA~~a~G--~t-~I 194 (430)
|..-......++|..||..... ++|. -+.++|.+ ++ .. +..++++- .|+.+.+ .++.-+++ .. +|
T Consensus 138 L~sddt~~mlsaL~~L~~~~~~we~~~-~~vvEG~gg~~~~~~~~d~eLylgnagta~r~lt~~-aa~V~~k~~~k~~Vl 215 (595)
T KOG0692 138 LNSDDTNYMLSALKTLGLNVETWEENN-RAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEF-AAAVTAKGGNKSYVL 215 (595)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEECCCC-EEEEECCCCEEEECHHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCCCEEEE
T ss_conf 345214666535777605650023798-799976898021011111233067641456667888-888616788725998
Q ss_pred C-CC-CCCHHHHHHHHHHHCCCCCCCCCCC---CCEEECCCCCCCCCCCEE----CCCCHHCCHHHHHCCCCCCCEEEEC
Q ss_conf 3-32-2201599899875014544320244---321202554222234200----1431000010000012444201002
Q gi|254780927|r 195 Y-NA-AREPEVVDLAHCLNSMGAKISGMGS---STITIQGVTSLSGTRHRI----LPDRIEAGTYAMAVAMTGGDVILKM 265 (430)
Q Consensus 195 ~-~~-~~~P~i~~t~~~L~~~Gv~I~~~~~---~~i~I~g~~~l~~~~~~V----~~D~ssAa~fl~Aaalt~g~i~i~n 265 (430)
. ++ ..++.+..+..-||+.|++|+.... .-+.|.-..-+++..... -+-|-++ .+..|-..+|++++.-
T Consensus 216 ~g~hrmq~rPi~~LV~~l~q~GadI~~~~~t~~~p~dV~~~~~~~gg~V~l~g~Vssqy~~~--~lm~ap~a~g~vt~~~ 293 (595)
T KOG0692 216 DGVHRMQERPIGDLVVGLKQLGADIECTLGTNCPPVDVNANGGLPGGKVKLSGSVSSQYLTA--LLMCAPLALGDVTIEI 293 (595)
T ss_pred ECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCCEEEEEEEEHHHHHHH--HHHHHHHCCCCEEEEE
T ss_conf 26740125776189999986387168733678983332003787675456535513668889--9874042079658997
Q ss_pred CCCCCC-----CCHHHHHHHCCCCEEEECC--CEEEEECCCCCCEEEEECCCCCCCCCCCHH---HHHHHHHCCCCCEEE
Q ss_conf 345642-----1046889752674367445--126753267643157621535666421013---466763135664167
Q gi|254780927|r 266 TDSSLL-----KTVFKVMRQTGVDIDIIDE--GIRVRWNGEKLRPVDVITAPFPGFPTDLQA---QFMAMMCCAAGISHI 335 (430)
Q Consensus 266 ~~~~~~-----~~~l~iL~~mGa~i~~~~~--~i~V~~~~~~l~~~di~~~~~pg~~~D~~p---~la~laa~A~G~s~I 335 (430)
+.-... ...++.++++|++++.... .+++...+ +.+ ..+.|-+..|... +++. ++. -|++..
T Consensus 294 vdgk~IS~pyv~mt~~lme~fgvnv~~s~~~~~~y~i~g~-~y~-----~p~~~~Ve~dAssa~yfla~-aa~-tg~~~t 365 (595)
T KOG0692 294 VDGKLISVPYVEMTLKLMERFGVNVEHSTSWDRFYVIGGQ-KYK-----SPGNAYVEGDASSASYFLAG-AAI-TGETVT 365 (595)
T ss_pred ECCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCEEECCCC-CCC-----CCCCCEEECCCCCCCCCCEE-EEE-ECCEEE
T ss_conf 2685646655668999999837674743777646752685-557-----99980464462223232103-667-523255
Q ss_pred EEECCH----HHHHHHHHHHHCCCEEEEECCEEEEECCCCCEEE----EEEECC-----HHHHHHHHHHHHHC-----CC
Q ss_conf 320465----6756678897488589997896999888985101----566081-----89999999999854-----98
Q gi|254780927|r 336 TETIFE----NRFMHVQELVRLGARISLSGQTARVEGVQGLRGA----PVMATD-----LRASVSLVIAALAA-----QG 397 (430)
Q Consensus 336 ~e~i~e----~R~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~----~v~~~D-----HRiaMa~~ia~L~a-----~g 397 (430)
-+.+.. +-.++.+-|++||.++..+.|+..+.||+. |+ ...+-| --.+|.+++.|+.+ ++
T Consensus 366 V~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svtv~gpp~--ga~~~~~lr~iD~m~~m~d~~~t~sVvA~~a~~~s~gd 443 (595)
T KOG0692 366 VEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVTVTGPPR--GAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLRSSGD 443 (595)
T ss_pred ECCCCCEECCCCCCHHHHHCCCCCEEEEECCCCCCCCCCC--CCCCCEEHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 4364613215652166651004560233035443368887--74331341220221356436676658888642568999
Q ss_pred EEEEECCCEECCCCC----CHHHHHHHCCCEEEE
Q ss_conf 199924330117784----878899866978999
Q gi|254780927|r 398 ETEISRVYHLDRGFE----CLEKKLSRCGALIQR 427 (430)
Q Consensus 398 ~~~I~~~~~i~ksyp----~f~~~L~~LGa~Ie~ 427 (430)
+++|.+...-+.+=- ..-..|++||+..+.
T Consensus 444 pttI~~~as~rvket~r~ia~~~el~klg~~~~E 477 (595)
T KOG0692 444 PTTIRDVASWRVKETERMIAICTELRKLGATVEE 477 (595)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8305443225677789999987778875221210
No 30
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=97.05 E-value=0.0028 Score=40.82 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=61.4
Q ss_pred HHHHHHHCCCCEEEECCCCHH------H-HHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 999997469969998698369------9-99999999974-989999277411420245259994366658644402343
Q gi|254780927|r 28 VMIASLLTSETLTLENIPDLA------D-VKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVS 99 (430)
Q Consensus 28 al~aaaLa~g~s~i~n~~~s~------D-~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (430)
+|++|+|+..+.+|+|+=.-+ + -.+.+++++++ +++++.... ++..+.+.|..+..-... ..|+
T Consensus 18 alaLS~itgkpi~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~-------gst~l~F~Pg~i~~g~~~-~d~g 89 (326)
T TIGR03399 18 ALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAEL-------GSTELEFIPGKIRGGDYR-FDIG 89 (326)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEC-------CCEEEEEECCCCCCCEEE-EECC
T ss_conf 99999976897799846899879885699999999999971985841144-------857999968854575168-7569
Q ss_pred HCCCCCCCCCCCC--CCC--CCEEEECCCCCCCC-CCHHHH----HHHHHHHCCCCCCC---CCCCEE
Q ss_conf 1132110225332--333--21045305866333-201212----34333210332245---686148
Q gi|254780927|r 100 KMRASFWVIGPLL--ARE--GYARISLPGGCAIG-TRPVDL----FVDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 100 ~~r~s~~~l~~ll--a~~--~~~~v~l~G~~~l~-~RP~~~----l~~~L~~lGa~i~~---~~g~~p 155 (430)
+.|+.-+++-+++ +.| +...+.+.|+-.-. .=|++. ++-.|++||++++. +.|++|
T Consensus 90 tagsi~L~lq~llp~~~fa~~~~~l~l~GgT~v~~sPsvDy~~~v~lP~l~~fG~~~~~~i~kRGfyP 157 (326)
T TIGR03399 90 TAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGFYP 157 (326)
T ss_pred CCCEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 88366522999999996389976999985558999998899999999999973996799999556789
No 31
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=96.97 E-value=0.00071 Score=44.73 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=38.7
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCE----EEEEEECCCCCCCCCCC-----CCCCCHHHH----HHHHHHHCCCCCCC
Q ss_conf 614899950244333333343466611----35665044446873323-----322201599----89987501454432
Q gi|254780927|r 152 GYVDARVSSKGLRGTSYTFPKVSVGAT----QVMMMVASLSHGDTSIY-----NAAREPEVV----DLAHCLNSMGAKIS 218 (430)
Q Consensus 152 g~~p~~i~g~~l~g~~i~l~~~S~q~~----s~lLlaA~~a~G~t~I~-----~~~~~P~i~----~t~~~L~~~Gv~I~ 218 (430)
|.-.+...++.+++++|..|..+++.+ .++|.+++++++.+++. |....|-++ .++-+|++||++++
T Consensus 66 gSt~l~F~Pg~i~gG~~~~d~gTAgSi~LvlQ~lLp~~lfa~~~~~ltl~GGTnv~~sPsiDy~~~V~lP~L~r~G~~~~ 145 (211)
T cd01553 66 GSDRISFRPGTVRGGDVRFAIGSAGSCTDVLQTILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQE 145 (211)
T ss_pred CCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 96699997986448669996687420999999999999748997499997403999898989999999999998199679
Q ss_pred CC-----------CCCCEEECCCCCCCCCCC
Q ss_conf 02-----------443212025542222342
Q gi|254780927|r 219 GM-----------GSSTITIQGVTSLSGTRH 238 (430)
Q Consensus 219 ~~-----------~~~~i~I~g~~~l~~~~~ 238 (430)
.. |.=.++|+|++++++.+.
T Consensus 146 ~~~~rrG~yP~GGG~v~~~v~Pv~~Lk~~~~ 176 (211)
T cd01553 146 ETLLRHGFYPAGGGVVATEVSPVEKLNTAQL 176 (211)
T ss_pred EEEEECCCCCCCCEEEEEEEEEHHHCCCCCC
T ss_conf 9998656043898289999977587682232
No 32
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=96.90 E-value=0.038 Score=33.46 Aligned_cols=109 Identities=21% Similarity=0.228 Sum_probs=57.2
Q ss_pred HHHHHHHCCCCEEEECCCCH------HH-HHHHHHHHHHC--CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 99999746996999869836------99-99999999974--98999927741142024525999436665864440234
Q gi|254780927|r 28 VMIASLLTSETLTLENIPDL------AD-VKLLIRILRSH--GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV 98 (430)
Q Consensus 28 al~aaaLa~g~s~i~n~~~s------~D-~~~~~~~l~~l--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (430)
+|.+|+|+..+.+|+|.=.- .+ -...+++++++ |..++.+... ..+.+.|..+..-.... .|
T Consensus 12 ~laLS~ltgkpv~I~nIR~~r~~PGL~~qh~~~l~l~~~i~~g~~~~~~~~~--------t~l~f~Pg~i~gg~~~~-d~ 82 (360)
T TIGR03400 12 RLVLSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTG--------TTVIYKPGLITGGSVTH-EC 82 (360)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCC--------EEEEEECCCCCCCCEEE-EC
T ss_conf 9999997599889998558997988479999999999985385484021471--------59999788121872799-66
Q ss_pred HHCCCCCCCCCCCC--CCC--CCEEEECCCCCCCC-CCHHHHH----HHHHHHCCC
Q ss_conf 31132110225332--333--21045305866333-2012123----433321033
Q gi|254780927|r 99 SKMRASFWVIGPLL--ARE--GYARISLPGGCAIG-TRPVDLF----VDSLKSLGV 145 (430)
Q Consensus 99 ~~~r~s~~~l~~ll--a~~--~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa 145 (430)
++.|+.-++|-+++ +.| ....+++.|+-.-. .-|+|.+ +-.|++||+
T Consensus 83 ~tagsi~l~lq~~lp~~~f~~~~~~l~l~GgT~~~~~psvD~~~~v~lp~l~~fGi 138 (360)
T TIGR03400 83 PTTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGI 138 (360)
T ss_pred CCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 88843089999999888636997699997503899897689999999999998299
No 33
>LOAD_rna_Cyc consensus
Probab=96.57 E-value=0.014 Score=36.21 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHH--------HHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHH
Q ss_conf 999999974699699986983699--------99999999974-989999277411420245259994366658644402
Q gi|254780927|r 26 LPVMIASLLTSETLTLENIPDLAD--------VKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYD 96 (430)
Q Consensus 26 ~Ral~aaaLa~g~s~i~n~~~s~D--------~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (430)
--++.+|+|+..+.+|+|+ +..+ -...+++++++ ++++..... .+..+.+.|..+..-... .
T Consensus 14 R~alaLS~itg~pi~I~nI-Ra~R~~PGL~~Qhl~~l~l~~~i~~a~~~g~~~-------gst~l~F~Pg~i~~g~~~-~ 84 (329)
T LOAD_rna_Cyc 14 RTALALSTLTGKPVRIENI-RANRPKPGLKPQHLSAVRLLKRITNATVEGAEL-------GSTELEFRPGKITGGVYR-F 84 (329)
T ss_pred HHHHHHHHHHCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCC-------CCEEEEEECCCCCCCCEE-E
T ss_conf 9999999976898799973-479989886799999999999970976813253-------865899979864687279-9
Q ss_pred HHHHCCCCCCCCCCCC----CCCCCEEEECCCCCCCC-CCHHHHH----HHHHHHCCCCCCC---CCCCEE
Q ss_conf 3431132110225332----33321045305866333-2012123----4333210332245---686148
Q gi|254780927|r 97 LVSKMRASFWVIGPLL----AREGYARISLPGGCAIG-TRPVDLF----VDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 97 ~~~~~r~s~~~l~~ll----a~~~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa~i~~---~~g~~p 155 (430)
.|++.|+.-++|-+++ -.-+...+.+.|+-.-. .=|++.+ +-.|++||++++. +-|++|
T Consensus 85 d~gtAgsi~L~LQ~lLp~~~f~~~~~~l~l~GGT~v~~sPsvDy~~~v~lP~l~~fG~~~~l~i~rRGfyP 155 (329)
T LOAD_rna_Cyc 85 DIGTAGSITLFLQTLLPLLLFAKGPSKIKLKGGTDVPWAPPVDYLKNVFLPILEKFGVHGELKILKRGFYP 155 (329)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 56987007999999999996489974999975438999998899999999999976996699998536689
No 34
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=95.56 E-value=0.13 Score=30.06 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=9.5
Q ss_pred HHHHHHHCCCCEEEECC
Q ss_conf 99999746996999869
Q gi|254780927|r 28 VMIASLLTSETLTLENI 44 (430)
Q Consensus 28 al~aaaLa~g~s~i~n~ 44 (430)
+|.+|+|+..+.+|.|.
T Consensus 20 al~LS~ltG~pvrI~nI 36 (341)
T COG0430 20 ALALSALTGKPVRIENI 36 (341)
T ss_pred HHHHHHHCCCCEEEEEE
T ss_conf 89899851896799987
No 35
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=95.23 E-value=0.018 Score=35.56 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=63.6
Q ss_pred HHHHHHHHCCCCEEEECCCCH-------HHHHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 999999746996999869836-------9999999999974-98999927741142024525999436665864440234
Q gi|254780927|r 27 PVMIASLLTSETLTLENIPDL-------ADVKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV 98 (430)
Q Consensus 27 Ral~aaaLa~g~s~i~n~~~s-------~D~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (430)
-++.+|+++..+.+|+|+=.- .--...++++.++ +++++.+... +..+.+.|..+..-... ..+
T Consensus 18 ~alaLS~itgkpi~I~nIRa~R~~PGL~~QHl~~l~l~~~i~~a~v~g~~~G-------St~l~F~Pg~i~~g~~~-~d~ 89 (339)
T PRK04204 18 TALSLSAITGKPVRITNIRAGRKKPGLLRQHLTAVKAAAEICNAEVEGAELG-------SQELVFIPGPIRGGDYR-FDI 89 (339)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECC-------CEEEEEECCCCCCCEEE-EEC
T ss_conf 9999999868987999735799898951999999999999709868622359-------65799968864586489-855
Q ss_pred HHCCCCCCCCCCC----CCCCCCEEEECCCCCCCC-CCHHHHH----HHHHHHCCCCCCC---CCCCEE
Q ss_conf 3113211022533----233321045305866333-2012123----4333210332245---686148
Q gi|254780927|r 99 SKMRASFWVIGPL----LAREGYARISLPGGCAIG-TRPVDLF----VDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 99 ~~~r~s~~~l~~l----la~~~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa~i~~---~~g~~p 155 (430)
++.|+.-+++-++ +-.-+...+.+.|+-.-. .=|++.+ +-.|++||++++. +.|++|
T Consensus 90 gTAgSi~L~lQ~~Lp~l~f~~~~~~l~l~GGT~v~~sPs~Dy~~~v~lP~l~~~G~~~~l~v~kRGfyP 158 (339)
T PRK04204 90 GTAGSITLVLQTLLPALLFADGPSRVTISGGTDVPWAPPIDYIRRVFLPLLARMGIRVEIELLRRGFYP 158 (339)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 887312478999999998679965999984348999989899999999999971986799998536788
No 36
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=95.03 E-value=0.29 Score=27.75 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCH-------HHHHHHHHHHHHC--CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 899999999746996999869836-------9999999999974--9899992774114202452599943666586444
Q gi|254780927|r 24 ASLPVMIASLLTSETLTLENIPDL-------ADVKLLIRILRSH--GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGS 94 (430)
Q Consensus 24 ~s~Ral~aaaLa~g~s~i~n~~~s-------~D~~~~~~~l~~l--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (430)
+--.+|++|+|+.-+.+|+|.-.. .--...++++.++ |..+..+... ..+.+.|..+..-...
T Consensus 12 ~lR~~l~LS~l~gkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~it~g~~~~~~~~s--------t~l~f~Pg~i~gg~~~ 83 (341)
T cd00875 12 FFRQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTG--------TTLIYKPGLITGGVLN 83 (341)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCC--------EEEEEECCCEECCCEE
T ss_conf 99999999997499879998568996998579999999999996186485143483--------3899979821078569
Q ss_pred HHHHHHCCCCCCCCCCCC--CCC--CCEEEECCCCCCCC-CCHHHHH----HHHHHHCCC
Q ss_conf 023431132110225332--333--21045305866333-2012123----433321033
Q gi|254780927|r 95 YDLVSKMRASFWVIGPLL--ARE--GYARISLPGGCAIG-TRPVDLF----VDSLKSLGV 145 (430)
Q Consensus 95 ~~~~~~~r~s~~~l~~ll--a~~--~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa 145 (430)
..|++.|+.-|+|-+++ +.| ....+++.|+-.-. .=|+|.+ +-.|++||.
T Consensus 84 -~d~~ta~si~l~lq~ll~l~~f~~~~~~l~l~GgT~~~~~psvD~~~~v~lp~l~~fGi 142 (341)
T cd00875 84 -HDCPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGI 142 (341)
T ss_pred -EECCCCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf -96788634099999999999747997399999256999998989999999999998589
No 37
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=94.76 E-value=0.21 Score=28.69 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=50.5
Q ss_pred HHHHHHC--CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEE----EEEEECCCCCCCCCCC-----CCCCCHHHH-
Q ss_conf 4333210--332245686148999502443333333434666113----5665044446873323-----322201599-
Q gi|254780927|r 137 VDSLKSL--GVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQ----VMMMVASLSHGDTSIY-----NAAREPEVV- 204 (430)
Q Consensus 137 ~~~L~~l--Ga~i~~~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s----~lLlaA~~a~G~t~I~-----~~~~~P~i~- 204 (430)
++.++++ |..+..+.+..-+...++.++|++|..|..+++..+ .+|+.++++++.++|. |....|-++
T Consensus 45 l~l~~~i~~g~~~~~~~~~t~l~f~Pg~i~gg~~~~d~~tagsi~l~lq~~lp~~~f~~~~~~l~l~GgT~~~~~psvD~ 124 (360)
T TIGR03400 45 LRLLEKVTNGSKIEISYTGTTVIYKPGLITGGSVTHECPTTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDT 124 (360)
T ss_pred HHHHHHHCCCCEECCCCCCEEEEEECCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH
T ss_conf 99999853854840214715999978812187279966888430899999998886369976999975038998976899
Q ss_pred ---HHHHHHHCCCCC
Q ss_conf ---899875014544
Q gi|254780927|r 205 ---DLAHCLNSMGAK 216 (430)
Q Consensus 205 ---~t~~~L~~~Gv~ 216 (430)
-++.+|++||+.
T Consensus 125 ~~~v~lp~l~~fGi~ 139 (360)
T TIGR03400 125 IRTATLPLLKKFGIP 139 (360)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999982998
No 38
>pfam01137 RTC RNA 3'-terminal phosphate cyclase. RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids.
Probab=93.89 E-value=0.054 Score=32.50 Aligned_cols=121 Identities=22% Similarity=0.262 Sum_probs=62.7
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHH-------HHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 999999746996999869836999-------9999999974-98999927741142024525999436665864440234
Q gi|254780927|r 27 PVMIASLLTSETLTLENIPDLADV-------KLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV 98 (430)
Q Consensus 27 Ral~aaaLa~g~s~i~n~~~s~D~-------~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (430)
-++++|+|+..+.+|+|+=.-++. .+.++++.++ ++++...... +..+.+.|..+..-... -.|
T Consensus 15 ~alaLS~ltgkpi~I~nIR~~R~~PGL~~qhl~~i~ll~~i~~~~~~g~~~g-------st~l~F~Pg~i~gg~~~-~d~ 86 (330)
T pfam01137 15 TALALSALTGKPVRIVNIRANRPNPGLRRQHLSAVRALAKITNAEVEGAEVG-------STELEFRPGTIRGGDYR-VDI 86 (330)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-------CEEEEECCCCCCCCEEE-EEC
T ss_conf 9999999768977998368998798857999999999999709737302548-------57999828745687079-966
Q ss_pred HHCCCCCCCCCCCC--C--CCCCEEEECCCCCCCC-CCHHHH----HHHHHHHCCCCCCC---CCCCEE
Q ss_conf 31132110225332--3--3321045305866333-201212----34333210332245---686148
Q gi|254780927|r 99 SKMRASFWVIGPLL--A--REGYARISLPGGCAIG-TRPVDL----FVDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 99 ~~~r~s~~~l~~ll--a--~~~~~~v~l~G~~~l~-~RP~~~----l~~~L~~lGa~i~~---~~g~~p 155 (430)
++.|+.-+++-+++ + .-+...+++.|+-.-. .=|++. ++-.|++||++++. +.|++|
T Consensus 87 ~tagsi~L~lq~llp~l~f~~~~~~l~l~GgT~v~~sPsvDy~~~v~lP~l~~~G~~~~l~i~kRGfyP 155 (330)
T pfam01137 87 GTAGSITLVLQTLLPLLLFAKGPSRITLKGGTDVPWAPPVDYIRNVTLPLLEKFGIEGELKVLRRGFYP 155 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 887416899999999997579975999986679999989899999999999973996699999656788
No 39
>pfam01137 RTC RNA 3'-terminal phosphate cyclase. RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids.
Probab=93.89 E-value=0.48 Score=26.31 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=53.1
Q ss_pred HHHHHHHHC----CCCCCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCEE----EEEEECCCCCCCCCCC-----CCCCC
Q ss_conf 234333210----332245-686148999502443333333434666113----5665044446873323-----32220
Q gi|254780927|r 135 LFVDSLKSL----GVVIKI-DGGYVDARVSSKGLRGTSYTFPKVSVGATQ----VMMMVASLSHGDTSIY-----NAARE 200 (430)
Q Consensus 135 ~l~~~L~~l----Ga~i~~-~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s----~lLlaA~~a~G~t~I~-----~~~~~ 200 (430)
.|+.+++.+ ++++.. +.|.--+...++.++|++|..|..+++.++ ++|..++++++.+++. |..-.
T Consensus 44 qhl~~i~ll~~i~~~~~~g~~~gst~l~F~Pg~i~gg~~~~d~~tagsi~L~lq~llp~l~f~~~~~~l~l~GgT~v~~s 123 (330)
T pfam01137 44 QHLSAVRALAKITNAEVEGAEVGSTELEFRPGTIRGGDYRVDIGTAGSITLVLQTLLPLLLFAKGPSRITLKGGTDVPWA 123 (330)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99999999999709737302548579998287456870799668874168999999999975799759999866799999
Q ss_pred HHHH----HHHHHHHCCCCCCC
Q ss_conf 1599----89987501454432
Q gi|254780927|r 201 PEVV----DLAHCLNSMGAKIS 218 (430)
Q Consensus 201 P~i~----~t~~~L~~~Gv~I~ 218 (430)
|-++ -++-+|++||++++
T Consensus 124 PsvDy~~~v~lP~l~~~G~~~~ 145 (330)
T pfam01137 124 PPVDYIRNVTLPLLEKFGIEGE 145 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEE
T ss_conf 8989999999999997399669
No 40
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=93.82 E-value=0.35 Score=27.24 Aligned_cols=149 Identities=12% Similarity=0.160 Sum_probs=81.8
Q ss_pred HHHHHHHHHHC----CCCCCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCEE----EEEEECCCCCCCCCCC-----CCC
Q ss_conf 21234333210----332245-686148999502443333333434666113----5665044446873323-----322
Q gi|254780927|r 133 VDLFVDSLKSL----GVVIKI-DGGYVDARVSSKGLRGTSYTFPKVSVGATQ----VMMMVASLSHGDTSIY-----NAA 198 (430)
Q Consensus 133 ~~~l~~~L~~l----Ga~i~~-~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s----~lLlaA~~a~G~t~I~-----~~~ 198 (430)
.+.|+.+++.+ +++++. +-|.--+...++.++|++|..|+.|++..+ .+|.+++++++.++|+ +..
T Consensus 46 ~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg~i~gG~~~~digTAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~ 125 (341)
T COG0430 46 KRQHLTAVRAAAEICNAEVEGAELGSTELVFRPGKIRGGDYRVDIGTAGSITLVLQTLLPLLLFADGPSRITVTGGTDVP 125 (341)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEECCEEEEEECCCCCEEEEHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 79999999999986187584103362699983462117617998137885546388778777337997499997754799
Q ss_pred CCHHHH----HHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCC--CEECCCCHHCCHHHHHCCCCC-------CCEEEEC
Q ss_conf 201599----899875014544320244321202554222234--200143100001000001244-------4201002
Q gi|254780927|r 199 REPEVV----DLAHCLNSMGAKISGMGSSTITIQGVTSLSGTR--HRILPDRIEAGTYAMAVAMTG-------GDVILKM 265 (430)
Q Consensus 199 ~~P~i~----~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~--~~V~~D~ssAa~fl~Aaalt~-------g~i~i~n 265 (430)
-.|.++ -++.+|++||++.+-.= .=.|-.+--+.+ .+|+|-...- . ..+... |-....|
T Consensus 126 ~aP~vDyir~v~lp~L~k~G~~~~l~v----lkRG~yP~GGGeV~~~V~p~~~~~--~--l~l~e~g~i~~v~Gia~~~~ 197 (341)
T COG0430 126 WAPPVDYIRRVTLPVLRKMGIECELEV----LKRGFYPRGGGEVLLTVEPPKEKL--P--LHLTERGEIEKVRGIAHSTN 197 (341)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEE----EECCCCCCCCCEEEEEECCCCCCC--C--EEEECCCCEEEEEEEEEECC
T ss_conf 899820446637999986162059999----832458799828999984865568--6--02303563467898997225
Q ss_pred CCCCCC----CCHHHHHHHCCCCEEEEC
Q ss_conf 345642----104688975267436744
Q gi|254780927|r 266 TDSSLL----KTVFKVMRQTGVDIDIID 289 (430)
Q Consensus 266 ~~~~~~----~~~l~iL~~mGa~i~~~~ 289 (430)
++.+-- +..-+.|+++|.++++..
T Consensus 198 lp~hvAeRqa~~A~~~L~~~~~~v~i~~ 225 (341)
T COG0430 198 LPPHVAERQAEAAKELLGKLGLEVEIYT 225 (341)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9917889999999998644368832788
No 41
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=93.65 E-value=0.57 Score=25.81 Aligned_cols=84 Identities=14% Similarity=0.269 Sum_probs=53.7
Q ss_pred HHHHHHHHC----CCCCCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCEE----EEEEECCCCCCCCCCC-----CCCCC
Q ss_conf 234333210----332245-686148999502443333333434666113----5665044446873323-----32220
Q gi|254780927|r 135 LFVDSLKSL----GVVIKI-DGGYVDARVSSKGLRGTSYTFPKVSVGATQ----VMMMVASLSHGDTSIY-----NAARE 200 (430)
Q Consensus 135 ~l~~~L~~l----Ga~i~~-~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s----~lLlaA~~a~G~t~I~-----~~~~~ 200 (430)
.|+.+++.+ +++++. +-|...+...++.+++++|..|..+++.++ ++|..++++++.+++. |....
T Consensus 47 QHl~~l~l~~~i~~a~v~g~~~GSt~l~F~Pg~i~~g~~~~d~gTAgSi~L~lQ~~Lp~l~f~~~~~~l~l~GGT~v~~s 126 (339)
T PRK04204 47 QHLTAVKAAAEICNAEVEGAELGSQELVFIPGPIRGGDYRFDIGTAGSITLVLQTLLPALLFADGPSRVTISGGTDVPWA 126 (339)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99999999999709868622359657999688645864898558873124789999999986799659999843489999
Q ss_pred HHHH----HHHHHHHCCCCCCC
Q ss_conf 1599----89987501454432
Q gi|254780927|r 201 PEVV----DLAHCLNSMGAKIS 218 (430)
Q Consensus 201 P~i~----~t~~~L~~~Gv~I~ 218 (430)
|-++ -++-+|++||++++
T Consensus 127 Ps~Dy~~~v~lP~l~~~G~~~~ 148 (339)
T PRK04204 127 PPIDYIRRVFLPLLARMGIRVE 148 (339)
T ss_pred CCHHHHHHHHHHHHHHCCCCEE
T ss_conf 8989999999999997198679
No 42
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=93.63 E-value=0.098 Score=30.81 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=62.3
Q ss_pred HHHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 9999997469969998698369-------999999999974-98999927741142024525999436665864440234
Q gi|254780927|r 27 PVMIASLLTSETLTLENIPDLA-------DVKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV 98 (430)
Q Consensus 27 Ral~aaaLa~g~s~i~n~~~s~-------D~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (430)
-++++|+|+..+.+|+|+=..+ --.+.++++.++ +++++.... ++..+.+.|..+..-... ..+
T Consensus 15 ~alaLS~ltg~pi~I~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~v~g~~~-------gst~l~F~Pg~i~~g~~~-~d~ 86 (326)
T cd00874 15 TALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAEL-------GSTELEFEPGKIKGGDYE-FDI 86 (326)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCC-------CCEEEEEECCCCCCCEEE-EEC
T ss_conf 999999976898799983689989886799999999999972976853035-------868999968844587267-746
Q ss_pred HHCCCCCCCCCCCC--CCC--CCEEEECCCCCCCC-CCHHHHH----HHHHHHCCCCCCC---CCCCEE
Q ss_conf 31132110225332--333--21045305866333-2012123----4333210332245---686148
Q gi|254780927|r 99 SKMRASFWVIGPLL--ARE--GYARISLPGGCAIG-TRPVDLF----VDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 99 ~~~r~s~~~l~~ll--a~~--~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa~i~~---~~g~~p 155 (430)
++.|+.-+++-+++ +.| +...+++.|+-.-. .=|+|.+ +-.|++||++++. +.|++|
T Consensus 87 ~tagSi~L~lq~llp~~~f~~~~~~ltl~GgT~v~~sPs~Dy~~~v~lP~l~~~Gi~~~l~i~kRGf~P 155 (326)
T cd00874 87 GTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFYP 155 (326)
T ss_pred CCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 988510225999999997579975999986558999998789999999999976986799998447789
No 43
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=93.16 E-value=0.68 Score=25.32 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=50.7
Q ss_pred HHHHHHHHC-----CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEE----EEEEECCCCCCCCCCC-----CCCCC
Q ss_conf 234333210-----332245686148999502443333333434666113----5665044446873323-----32220
Q gi|254780927|r 135 LFVDSLKSL-----GVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQ----VMMMVASLSHGDTSIY-----NAARE 200 (430)
Q Consensus 135 ~l~~~L~~l-----Ga~i~~~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s----~lLlaA~~a~G~t~I~-----~~~~~ 200 (430)
.|+..|+.+ |..+..+.+.--+...++.++|+++..|..+++..+ .+|+.|+++++.+++. |....
T Consensus 44 qhl~~l~l~~~it~g~~~~~~~~st~l~f~Pg~i~gg~~~~d~~ta~si~l~lq~ll~l~~f~~~~~~l~l~GgT~~~~~ 123 (341)
T cd00875 44 HEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGLITGGVLNHDCPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGD 123 (341)
T ss_pred HHHHHHHHHHHHCCCCEECCCCCCEEEEEECCCEECCCEEEECCCCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 99999999999618648514348338999798210785699678863409999999999974799739999925699999
Q ss_pred HHHH----HHHHHHHCCCCC
Q ss_conf 1599----899875014544
Q gi|254780927|r 201 PEVV----DLAHCLNSMGAK 216 (430)
Q Consensus 201 P~i~----~t~~~L~~~Gv~ 216 (430)
|-++ -++-+|++||+.
T Consensus 124 psvD~~~~v~lp~l~~fGi~ 143 (341)
T cd00875 124 PSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred CCHHHHHHHHHHHHHHHCCC
T ss_conf 89899999999999985897
No 44
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=91.39 E-value=1.1 Score=23.92 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=60.7
Q ss_pred HHHHHHHHCCCCEEEECCCCH-------HHHHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHH-H
Q ss_conf 999999746996999869836-------9999999999974-989999277411420245259994366658644402-3
Q gi|254780927|r 27 PVMIASLLTSETLTLENIPDL-------ADVKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYD-L 97 (430)
Q Consensus 27 Ral~aaaLa~g~s~i~n~~~s-------~D~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 97 (430)
-+|.+|+|+..+.+|+|+=.- .--.+.+++++++ +++++.... ++..+.+.|..+.. .++. .
T Consensus 15 ~alaLS~ltgkpvrI~nIRa~R~~PGL~~QHl~~l~l~~~it~a~v~g~~~-------gst~l~F~Pg~i~g--G~~~~d 85 (338)
T cd00295 15 HALSLAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAEL-------GGQRFIFRPGNIIG--GDVRFA 85 (338)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCC-------CCEEEEECCCCCCC--CEEEEE
T ss_conf 999999974898799985589979896799999999999962976843125-------96689984885448--738996
Q ss_pred HHHCCCCCCCCCCC----CCCCCCEEEECCCCCCCC-CCHHHHH----HHHHHHCCCCCCC---CCCCEE
Q ss_conf 43113211022533----233321045305866333-2012123----4333210332245---686148
Q gi|254780927|r 98 VSKMRASFWVIGPL----LAREGYARISLPGGCAIG-TRPVDLF----VDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 98 ~~~~r~s~~~l~~l----la~~~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa~i~~---~~g~~p 155 (430)
|++.|+.-+++-++ +..-+..++++.|+-.-. .=|+|.+ +-.|++||+..+. +-|+.|
T Consensus 86 ~gtAgSi~L~lQ~lLp~llfa~~~~~ltl~GGT~v~~sPsiDy~~~v~lP~l~k~G~~~~~~~~r~g~~p 155 (338)
T cd00295 86 CGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGDELELRHGFRG 155 (338)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 7987208999999999997589976999987678999988899999999999984886321278888637
No 45
>PRK08818 prephenate dehydrogenase; Provisional
Probab=81.19 E-value=1.3 Score=23.41 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=25.7
Q ss_pred CCEEEECCCCCCCCCHHHHHHHCCCCEEEEC
Q ss_conf 4201002345642104688975267436744
Q gi|254780927|r 259 GDVILKMTDSSLLKTVFKVMRQTGVDIDIID 289 (430)
Q Consensus 259 g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~ 289 (430)
+.|.+++-.+.++|.++.++++-+.++....
T Consensus 298 ~sv~~P~D~~~S~r~ll~~~~~~~~~~~~~~ 328 (373)
T PRK08818 298 LSVYLPEDQPGSLRRLLHVFEQHGVNLSSIH 328 (373)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCHHHHC
T ss_conf 7687889887349999999998456245410
No 46
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=74.66 E-value=2.5 Score=21.66 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEECCC--CCCCCCCCEECCCCHHCCHHHHHCCCCCCCEEEECCCCCCCCC-HHHHHH
Q ss_conf 9989987501454432024432120255--4222234200143100001000001244420100234564210-468897
Q gi|254780927|r 203 VVDLAHCLNSMGAKISGMGSSTITIQGV--TSLSGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKT-VFKVMR 279 (430)
Q Consensus 203 i~~t~~~L~~~Gv~I~~~~~~~i~I~g~--~~l~~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~-~l~iL~ 279 (430)
+.-..+.|++.-.++...+...+.+-|. ...+.. .-|.+++|++|++ |-+|.=.+-..-+.+. -.|+|+
T Consensus 252 i~g~a~amr~~a~~~~~~~~~~iD~~GTGGDg~~tf------NiST~aa~v~Aa~--Gv~VaKHGNrs~sSksGSADvLe 323 (531)
T PRK09522 252 IAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSI------NISTASAFVAAAC--GLKVAKHGNRSVSSKSGSSDLLA 323 (531)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCC------CHHHHHHHHHHCC--CCEEEEECCCCCCCCCCHHHHHH
T ss_conf 999999999848616889987023256799888872------4789999999739--98676058987798862999999
Q ss_pred HCCCCEEEECCC
Q ss_conf 526743674451
Q gi|254780927|r 280 QTGVDIDIIDEG 291 (430)
Q Consensus 280 ~mGa~i~~~~~~ 291 (430)
.+|++++...+.
T Consensus 324 alGv~i~~~~~~ 335 (531)
T PRK09522 324 AFGINLDMNADK 335 (531)
T ss_pred HCCCCCCCCHHH
T ss_conf 709998899999
No 47
>KOG3980 consensus
Probab=73.61 E-value=6.7 Score=18.86 Aligned_cols=125 Identities=26% Similarity=0.311 Sum_probs=66.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCH------HH-HHHHHHHHHHC--CCEEEEECCCCEEEECCCCEEEEE
Q ss_conf 7897696466899999999746996999869836------99-99999999974--989999277411420245259994
Q gi|254780927|r 14 GTIAISGAKNASLPVMIASLLTSETLTLENIPDL------AD-VKLLIRILRSH--GVEILSDSSYNDQNKSYSSTMHFR 84 (430)
Q Consensus 14 G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s------~D-~~~~~~~l~~l--G~~i~~~~~~~~~~~~~~~~~~~~ 84 (430)
+.+.-.|.-+.-+| |.+|.|+.-+.++.+.-.. .| -...++.|+.+ |-.|+++...+... +.
T Consensus 5 ~~~~f~g~q~lr~~-lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~--------f~ 75 (361)
T KOG3980 5 GSYLFGGGQALRLR-LVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVI--------FT 75 (361)
T ss_pred CEEEECCHHHHHHH-HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEE--------EC
T ss_conf 25885463899999-9999706995699985268999885088889999998624884798751541899--------72
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCE----EEECCCCCCC-CCCHHH----HHHHHHHHCCCCCC
Q ss_conf 3666586444023431132110225332333210----4530586633-320121----23433321033224
Q gi|254780927|r 85 CRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYA----RISLPGGCAI-GTRPVD----LFVDSLKSLGVVIK 148 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~----~v~l~G~~~l-~~RP~~----~l~~~L~~lGa~i~ 148 (430)
|..+..-.. .-.|.+.+.--||+-|++....++ ++.+.|.-.- .+=++| -++-.|++||+..+
T Consensus 76 Pg~i~GG~~-~~dc~t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~ 147 (361)
T KOG3980 76 PGLILGGTV-THDCPTARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDE 147 (361)
T ss_pred CCEEECCCE-EEECCCCCCEEEEHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 753547836-876467653344244577641014897299996623789886548789988889988386764
No 48
>PRK06434 cystathionine gamma-lyase; Validated
Probab=73.47 E-value=6.7 Score=18.84 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=10.4
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 1234333210332245
Q gi|254780927|r 134 DLFVDSLKSLGVVIKI 149 (430)
Q Consensus 134 ~~l~~~L~~lGa~i~~ 149 (430)
..+-+.|.++|+++++
T Consensus 118 ~l~~~~l~~~Gi~v~~ 133 (384)
T PRK06434 118 YFFNKVLKTLGIHVDY 133 (384)
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 9999888756972799
No 49
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=69.72 E-value=8.2 Score=18.30 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=9.5
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 1234333210332245
Q gi|254780927|r 134 DLFVDSLKSLGVVIKI 149 (430)
Q Consensus 134 ~~l~~~L~~lGa~i~~ 149 (430)
..+-+-|+++|++++.
T Consensus 107 ~l~~~~l~~~gi~~~~ 122 (388)
T PRK08861 107 RLFNTRANKGDFKVLF 122 (388)
T ss_pred HHHHHHHHHCCEEEEE
T ss_conf 9999898628869999
No 50
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=68.99 E-value=2.6 Score=21.53 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=27.4
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCCCEEEE
Q ss_conf 4530586633320121234333210332245-68614899
Q gi|254780927|r 119 RISLPGGCAIGTRPVDLFVDSLKSLGVVIKI-DGGYVDAR 157 (430)
Q Consensus 119 ~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~-~~g~~p~~ 157 (430)
.|.+|||+.|-.+.+..+++.|.+.|-+|.. ++|.+|..
T Consensus 75 ~V~iTGGEPllq~~~~~L~~~l~~~g~~v~iETnGt~~~~ 114 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQD 114 (238)
T ss_pred EEEECCCCHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 8994599834441899999999857984999789987600
No 51
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase; InterPro: IPR006233 Cystathionine beta-lyase (alternate name: beta-cystathionase) is one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys .; GO: 0004121 cystathionine beta-lyase activity, 0006520 amino acid metabolic process, 0005737 cytoplasm.
Probab=64.04 E-value=11 Score=17.58 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=47.9
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEECC-------CCC-CCC----C-CCEE-CCCCHHCCHHHHHCCCCCCCEEE-ECCCC
Q ss_conf 98998750145443202443212025-------542-222----3-4200-14310000100000124442010-02345
Q gi|254780927|r 204 VDLAHCLNSMGAKISGMGSSTITIQG-------VTS-LSG----T-RHRI-LPDRIEAGTYAMAVAMTGGDVIL-KMTDS 268 (430)
Q Consensus 204 ~~t~~~L~~~Gv~I~~~~~~~i~I~g-------~~~-l~~----~-~~~V-~~D~ssAa~fl~Aaalt~g~i~i-~n~~~ 268 (430)
-.+++=||-+|++.+....+-+.|-. +.+ |+| + ++.+ --|++-| ..|. .+.+ +...+
T Consensus 245 Yt~lRGlRTlgvRL~~Hqes~laiA~WL~eqpeVarVlHPALPs~pgH~~wkRDF~Gs------sGlF--s~vLt~~~~~ 316 (389)
T TIGR01324 245 YTVLRGLRTLGVRLKRHQESALAIAKWLEEQPEVARVLHPALPSDPGHELWKRDFSGS------SGLF--SVVLTKRLSQ 316 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCC------CCCC--EEEECCCCCH
T ss_conf 8888656566432577666689999864379965555577862288733221122556------5441--0237479886
Q ss_pred CCCCCHHHHHHHCCCCEEEEC-CCEEEE
Q ss_conf 642104688975267436744-512675
Q gi|254780927|r 269 SLLKTVFKVMRQTGVDIDIID-EGIRVR 295 (430)
Q Consensus 269 ~~~~~~l~iL~~mGa~i~~~~-~~i~V~ 295 (430)
+...+|+|.|+=+|.-++|.. +++-+.
T Consensus 317 k~vhaFlD~l~lFglgySWGGyESLal~ 344 (389)
T TIGR01324 317 KEVHAFLDALKLFGLGYSWGGYESLALN 344 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHEEEE
T ss_conf 7899998788887621130001010120
No 52
>PRK08064 cystathionine beta-lyase; Provisional
Probab=61.54 E-value=12 Score=17.29 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=14.5
Q ss_pred EEEEECCC---CEEEEEECCCCHHHHH
Q ss_conf 38982797---3137897696466899
Q gi|254780927|r 3 RIKIIGGN---KLNGTIAISGAKNASL 26 (430)
Q Consensus 3 ~l~V~g~~---~L~G~i~vpgSKs~s~ 26 (430)
.+.|+.+. +-.|.|.+|=..|.+-
T Consensus 9 T~~vh~g~~~~~~~gav~~Piy~sst~ 35 (390)
T PRK08064 9 TLLLHNQYKHDKQTGAVNVPIYHASTF 35 (390)
T ss_pred HHHEECCCCCCCCCCCCCCCCCCCCCE
T ss_conf 440558988898899955883468753
No 53
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=60.87 E-value=5 Score=19.66 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=27.3
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC-CCCEEEE
Q ss_conf 45305866333201212343332103322456-8614899
Q gi|254780927|r 119 RISLPGGCAIGTRPVDLFVDSLKSLGVVIKID-GGYVDAR 157 (430)
Q Consensus 119 ~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~-~g~~p~~ 157 (430)
.|+++||+.+..+.+..+++.|++.|.++..+ +|.+|..
T Consensus 74 ~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti~~~ 113 (212)
T COG0602 74 GVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTIPVW 113 (212)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 6998188646622399999999858840998379971553
No 54
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=59.94 E-value=12 Score=17.11 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=6.5
Q ss_pred HHHHHCCCCCCC
Q ss_conf 333210332245
Q gi|254780927|r 138 DSLKSLGVVIKI 149 (430)
Q Consensus 138 ~~L~~lGa~i~~ 149 (430)
+-|+++|+++++
T Consensus 98 ~~l~~~Gi~v~~ 109 (369)
T cd00614 98 RLLPKLGIEVTF 109 (369)
T ss_pred HHHHCCCEEEEE
T ss_conf 778608923897
No 55
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=58.56 E-value=4.5 Score=19.98 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCC-CCCC
Q ss_conf 332333210453058663332012123433321033-2245-6861
Q gi|254780927|r 110 PLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGV-VIKI-DGGY 153 (430)
Q Consensus 110 ~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa-~i~~-~~g~ 153 (430)
-.++.||...|-+|||+.|-++-+...+.-+++.|. +|+- +||.
T Consensus 56 ~~a~~fGV~kvKlTGGEPlLR~D~~~Ii~~~~~~~~~~vSmTTNG~ 101 (324)
T TIGR02668 56 RVASEFGVRKVKLTGGEPLLRKDLIEIIRRIKDYGIKDVSMTTNGI 101 (324)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCHH
T ss_conf 9998708832775178743456699999861467503442030314
No 56
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=58.26 E-value=13 Score=16.93 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 121234333210332245
Q gi|254780927|r 132 PVDLFVDSLKSLGVVIKI 149 (430)
Q Consensus 132 P~~~l~~~L~~lGa~i~~ 149 (430)
+-..+++.|.++|++++.
T Consensus 104 ~t~~l~~~l~~~Gi~v~~ 121 (384)
T PRK08574 104 TTLRLLKSLEKFGVRVRL 121 (384)
T ss_pred HHHHHHHHHHHHCCEEEE
T ss_conf 599999999860857999
No 57
>PRK07394 hypothetical protein; Provisional
Probab=54.36 E-value=15 Score=16.52 Aligned_cols=87 Identities=17% Similarity=0.106 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 36999999999997498999927741142024525999436665864440234311321102253323332104530586
Q gi|254780927|r 46 DLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGG 125 (430)
Q Consensus 46 ~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~ 125 (430)
..++.....+++|++..++............+.+ .... .+. ...+ ++.-| ++|..|. +|..-|.
T Consensus 57 T~~EiaG~~~a~r~~~~~~~~~~~~~~~~~~Gtg-gDG~-~~t--~NiS--------T~aa~---v~Aa~G~-~VaKHGn 120 (342)
T PRK07394 57 TPEELAGMLDTYDELGPKLQSPSNQRPPIVFGMP-YDGR-SRT--APIY--------PLTAL---LLAAAGQ-PVVLHGG 120 (342)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCC-CCCC-CCC--CCCH--------HHHHH---HHHHCCC-EEEEECC
T ss_conf 8999999999999857788997677876676789-9887-776--4228--------99999---9996899-5998889
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 63332012123433321033224
Q gi|254780927|r 126 CAIGTRPVDLFVDSLKSLGVVIK 148 (430)
Q Consensus 126 ~~l~~RP~~~l~~~L~~lGa~i~ 148 (430)
.++..+-=-...|.|+.||+++.
T Consensus 121 rsvssk~G~~saDvLe~lGv~i~ 143 (342)
T PRK07394 121 DRMPTKYGVPLIELWQGLGVDLT 143 (342)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 98876567427999997599867
No 58
>PRK08136 glycosyl transferase family protein; Provisional
Probab=52.82 E-value=13 Score=16.97 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 233321045305866333201212343332103322456
Q gi|254780927|r 112 LAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKID 150 (430)
Q Consensus 112 la~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~ 150 (430)
++..|. +|..-|.-+...| ..-.|.|+.||+.+...
T Consensus 105 ~Aa~G~-~VakHGnr~~ssk--~GsadvLeaLGv~~~~~ 140 (316)
T PRK08136 105 LAREGV-PVLVHGVSEDPGR--VTSAEIFEALGIPPTLH 140 (316)
T ss_pred HHHCCC-CEEEECCCCCCCC--CCHHHHHHHCCCCCCCC
T ss_conf 997899-0898689988875--66999999869987799
No 59
>TIGR01343 hacA_fam homoaconitate hydratase family protein; InterPro: IPR006251 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents the large subunit of 3-isopropylmalate dehydratase (LeuC), as well as homoaconitase, certain aconitases and uncharacterised proteins, and is a subgroup of those represented in IPR012095. Homoaconitase, aconitase and 3-isopropylmalate dehydratase have similar overall structures and domain organisation . All are dehydratases that bind a [4Fe-4S]-cluster. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterised member is T. thermophilus homoaconitase, an enzyme of a non-aspartate pathway of lysine biosynthesis. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0016836 hydro-lyase activity, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process.
Probab=51.44 E-value=17 Score=16.22 Aligned_cols=129 Identities=12% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHHCCCCCCCC---CCCEEEEEECCC-CCCCCCCCCCCCCCCEEEEE-----------EECCCCCCCCCCCCC--
Q ss_conf 2343332103322456---861489995024-43333333434666113566-----------504444687332332--
Q gi|254780927|r 135 LFVDSLKSLGVVIKID---GGYVDARVSSKG-LRGTSYTFPKVSVGATQVMM-----------MVASLSHGDTSIYNA-- 197 (430)
Q Consensus 135 ~l~~~L~~lGa~i~~~---~g~~p~~i~g~~-l~g~~i~l~~~S~q~~s~lL-----------laA~~a~G~t~I~~~-- 197 (430)
.+-+--++.|++.-++ +|=.+.-...++ .+|+.+..-.-|-+-|-..+ ||-.+|.|++=++-|
T Consensus 78 ~~~efvkk~Gi~~F~~~GreGI~HqvL~E~glv~PG~~vvGaDSHTCTyGA~GAFaTG~GsTD~A~a~A~Gk~W~rVPEs 157 (432)
T TIGR01343 78 LAREFVKKKGIKYFFDVGREGICHQVLPEEGLVKPGDLVVGADSHTCTYGALGAFATGVGSTDIAYAIATGKVWFRVPES 157 (432)
T ss_pred HHHHHHHHHCHHHCCCCCCCCCEEEEECCCCEECCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCE
T ss_conf 99999986160223778885416898326870067877993473122345576541374458999999828610215718
Q ss_pred -------CCCHHHH---HHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCHHCCHHHHHCCCCCCCEEEECCC
Q ss_conf -------2201599---899875014544320244321202554222234200143100001000001244420100234
Q gi|254780927|r 198 -------AREPEVV---DLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTD 267 (430)
Q Consensus 198 -------~~~P~i~---~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~ 267 (430)
...|+|. -.+++.++.| +++..|. +.||. ++...-.+ -.+++||.|+-
T Consensus 158 ~~v~~~G~L~p~V~aKDviL~~I~~iG--~DGAtY~-----------a~Ef~--Ge~~~~~~-------~~~R~TlaNMA 215 (432)
T TIGR01343 158 IKVQLTGKLNPGVTAKDVILEVIGEIG--VDGATYK-----------AMEFH--GETVKNMD-------MEERLTLANMA 215 (432)
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHC--CCCCCEE-----------EEEEE--CCEEEECC-------HHHHHHHHHHH
T ss_conf 999988303899650366632226544--7875206-----------89981--73245266-------43466798899
Q ss_pred C---------CCCCCHHHHHHHCC-CCE
Q ss_conf 5---------64210468897526-743
Q gi|254780927|r 268 S---------SLLKTVFKVMRQTG-VDI 285 (430)
Q Consensus 268 ~---------~~~~~~l~iL~~mG-a~i 285 (430)
. .++...++.|++.| .+.
T Consensus 216 iEaGgKtGii~~De~T~~Y~~~~Gv~~~ 243 (432)
T TIGR01343 216 IEAGGKTGIIEPDEKTIEYLKERGVAKE 243 (432)
T ss_pred HHCCCCEEEECCCHHHHHHHHHHCCCCC
T ss_conf 9818831477367279999997178754
No 60
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=50.64 E-value=14 Score=16.77 Aligned_cols=159 Identities=13% Similarity=0.207 Sum_probs=73.4
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 99869836999999999997498999927741142024525999436665864440234311321102253323332104
Q gi|254780927|r 40 TLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYAR 119 (430)
Q Consensus 40 ~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~ 119 (430)
++++ ...++..-+.+++++..-.+....... .+..+.+ ..+....+.+ ++.-| ++|..|. +
T Consensus 47 r~Kg-et~eEi~G~~~am~~~~~~~~~p~~~~-vDi~GTG-----GDg~~T~NiS--------t~aA~---v~A~~Gv-~ 107 (338)
T COG0547 47 RIKG-ETPEEIAGFAEAMREHAPKLPVPAADP-VDIVGTG-----GDGANTINIS--------TAAAI---VAAAAGV-P 107 (338)
T ss_pred HHHC-CCHHHHHHHHHHHHHHCCCCCCCCCCC-CCEECCC-----CCCCCCCCCH--------HHHHH---HHHHCCC-C
T ss_conf 9836-999999999999997342578988777-7755079-----8988852414--------99999---9982899-1
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC------------CCEEEEEECCCCC---CCCCCCCCCCCCCEEEEEEE
Q ss_conf 53058663332012123433321033224568------------6148999502443---33333343466611356650
Q gi|254780927|r 120 ISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDG------------GYVDARVSSKGLR---GTSYTFPKVSVGATQVMMMV 184 (430)
Q Consensus 120 v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~------------g~~p~~i~g~~l~---g~~i~l~~~S~q~~s~lLla 184 (430)
|..-|+-+..++.=. -|.|+.||+++.... ++++....-+.++ +..-.+..++. +=+-
T Consensus 108 VaKHGnrs~sSksGs--aDvleaLGv~l~~~~e~~~~~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RTi-----fN~L 180 (338)
T COG0547 108 VAKHGNRSVSSKSGS--ADVLEALGVNLELSPEQAARALEETGIGFLFAPAYHPAMKHVAPVRKELGVRTI-----FNLL 180 (338)
T ss_pred EEEECCCCCCCCCCH--HHHHHHCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCH-----HHHH
T ss_conf 776789877887768--999997599878999999999985594898761138899988999997089846-----7762
Q ss_pred CCCC---CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCC
Q ss_conf 4444---687332332220159989987501454432024432120255
Q gi|254780927|r 185 ASLS---HGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGV 230 (430)
Q Consensus 185 A~~a---~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~ 230 (430)
+++. .-...+.+.+..+|+......|+..|. .+.+.|+|.
T Consensus 181 GPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~------~ralvV~G~ 223 (338)
T COG0547 181 GPLLNPARAKLQLIGVYHPELVELLAEALRLLGV------ERALVVHGL 223 (338)
T ss_pred CCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCC------CEEEEEECC
T ss_conf 0156877887569987578889999999998286------618999778
No 61
>TIGR01245 trpD anthranilate phosphoribosyltransferase; InterPro: IPR005940 In many widely different species, including Escherichia coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzyme is a C-terminal part of a multifunctional protein together with glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (4.1.3.27 from EC).; GO: 0004048 anthranilate phosphoribosyltransferase activity, 0000162 tryptophan biosynthetic process.
Probab=50.55 E-value=9 Score=18.02 Aligned_cols=183 Identities=17% Similarity=0.252 Sum_probs=80.9
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 99999746996999869836999999999997498999927741142024525999436665864440234311321102
Q gi|254780927|r 28 VMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWV 107 (430)
Q Consensus 28 al~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~ 107 (430)
+.++|.|+ -.++++ ..-+++..+.+++|.-=.++..+....-.+..+.++-. ....+. |.+|- |
T Consensus 30 ~~~aA~L~--al~~KG-et~~Ei~GfA~amr~~a~~~~~~~~~~lvD~vGTGGDg-----~~T~Ni-------ST~sA-f 93 (331)
T TIGR01245 30 AQIAAILA--ALRIKG-ETPEEIAGFAKAMREHAVKVPGEPVEDLVDIVGTGGDG-----ASTINI-------STASA-F 93 (331)
T ss_pred HHHHHHHH--HHHHCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC-----CCCCHH-------HHHHH-H
T ss_conf 88999999--997518-89999999999999836757888875136750147788-----631116-------68999-9
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEC--------CCCCC-CCCCCCCCC-CCC
Q ss_conf 25332333210453058663332012123433321033224568614899950--------24433-333334346-661
Q gi|254780927|r 108 IGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS--------KGLRG-TSYTFPKVS-VGA 177 (430)
Q Consensus 108 l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g--------~~l~g-~~i~l~~~S-~q~ 177 (430)
+ +|..|- +|.--|.=|..+. .-=-|.|++||+++....+..--.|.. +.+++ -....|.+. -++
T Consensus 94 V---aAaaGv-kvAKHGNRSvSS~--SGSADvLEaLGvnl~~~pe~v~~~l~~~GigFlFAP~yHpa~k~v~pvR~~Lg~ 167 (331)
T TIGR01245 94 V---AAAAGV-KVAKHGNRSVSSK--SGSADVLEALGVNLDLSPEKVARSLEEVGIGFLFAPLYHPAMKHVAPVRRELGV 167 (331)
T ss_pred H---HHHCCC-CEEEECCCCEECC--CCHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCHHHCCC
T ss_conf 9---985678-7376648102435--412578997288346898999999974694585177513465642041111686
Q ss_pred EEEEEEECCCCC---CCCCCCCCCCCHHHHHHHHHHHCCCCC----CCC-CCCCCEEECCCCC
Q ss_conf 135665044446---873323322201599899875014544----320-2443212025542
Q gi|254780927|r 178 TQVMMMVASLSH---GDTSIYNAAREPEVVDLAHCLNSMGAK----ISG-MGSSTITIQGVTS 232 (430)
Q Consensus 178 ~s~lLlaA~~a~---G~t~I~~~~~~P~i~~t~~~L~~~Gv~----I~~-~~~~~i~I~g~~~ 232 (430)
..-+=+-+|+.+ =..-+.+.++...+.-+...|+.+|++ |+. .|-+.+.+.|...
T Consensus 168 rTvFN~LGPL~NPA~~~~qv~GVy~~~L~~~~A~aL~~LG~krAlVVhG~~GlDE~s~~g~t~ 230 (331)
T TIGR01245 168 RTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVHGEDGLDEISLTGPTK 230 (331)
T ss_pred CEEECCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCCE
T ss_conf 402012100026566880278534688899999999861767089985788961453167716
No 62
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=48.66 E-value=19 Score=15.94 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=13.5
Q ss_pred EEEEECCC---CEEEEEECCCCHHHH
Q ss_conf 38982797---313789769646689
Q gi|254780927|r 3 RIKIIGGN---KLNGTIAISGAKNAS 25 (430)
Q Consensus 3 ~l~V~g~~---~L~G~i~vpgSKs~s 25 (430)
...|++|. .-.|.|.+|=-.+.+
T Consensus 5 T~~vh~G~~~~~~~g~v~~PIy~tst 30 (379)
T PRK06176 5 TKLIHGGISEDATTGAVSVPIYQTST 30 (379)
T ss_pred HHHEECCCCCCCCCCCEECCCCCCCC
T ss_conf 66207888888889980188127888
No 63
>PRK06767 methionine gamma-lyase; Provisional
Probab=46.90 E-value=20 Score=15.77 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=11.8
Q ss_pred EEECCC---CEEEEEECCCCHHHHH
Q ss_conf 982797---3137897696466899
Q gi|254780927|r 5 KIIGGN---KLNGTIAISGAKNASL 26 (430)
Q Consensus 5 ~V~g~~---~L~G~i~vpgSKs~s~ 26 (430)
.|+.|. +-.|.|.+|=..|.+.
T Consensus 10 ~vh~g~~~~~~~gav~pPIy~sstf 34 (386)
T PRK06767 10 LIHHGYTSEEHKGSLTPPLFQTSTF 34 (386)
T ss_pred EEECCCCCCCCCCCCCCCEECCCCE
T ss_conf 3778988888999950881078886
No 64
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=46.39 E-value=9.5 Score=17.87 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=50.4
Q ss_pred EEECCCCCCCCCCH-HHHHHHHHHH-CCCCCCC-CCCCEEEEEEC---CCCCCCCCCCCC-CCC-CCEEEEEEECC---C
Q ss_conf 45305866333201-2123433321-0332245-68614899950---244333333343-466-61135665044---4
Q gi|254780927|r 119 RISLPGGCAIGTRP-VDLFVDSLKS-LGVVIKI-DGGYVDARVSS---KGLRGTSYTFPK-VSV-GATQVMMMVAS---L 187 (430)
Q Consensus 119 ~v~l~G~~~l~~RP-~~~l~~~L~~-lGa~i~~-~~g~~p~~i~g---~~l~g~~i~l~~-~S~-q~~s~lLlaA~---~ 187 (430)
-|.++||+.+..-- +...+.-.++ ||.+|+. +||..|-.... ++|- -.+-+|+ ++. .+ -.+.+. .
T Consensus 66 gVVitGGEptlQ~~eL~d~~~~v~~nlGf~vkLdTNG~~P~~L~~ll~~gLv-D~va~D~Kap~~~y---~~~~G~~~~~ 141 (220)
T TIGR02495 66 GVVITGGEPTLQAGELGDFLREVRENLGFEVKLDTNGSNPRVLEELLEEGLV-DYVAMDVKAPPEKY---GELYGREKNA 141 (220)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCC-CEEEEECCCCHHHC---CEEECCCCCC
T ss_conf 5787287532367778999999998659278560678867899999860487-57875014786567---4000633210
Q ss_pred CCCCCCCCCCCCCHHHH-----HHHHHHHCCC
Q ss_conf 46873323322201599-----8998750145
Q gi|254780927|r 188 SHGDTSIYNAAREPEVV-----DLAHCLNSMG 214 (430)
Q Consensus 188 a~G~t~I~~~~~~P~i~-----~t~~~L~~~G 214 (430)
+.+.|-|. |...|++. ..++.|...+
T Consensus 142 ~~~~tnis-PsrtPe~l~~~~~~SlEil~~s~ 172 (220)
T TIGR02495 142 AKKETNIS-PSRTPEKLLKNILKSLEILLESG 172 (220)
T ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 03532468-77565899999875567554247
No 65
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=46.03 E-value=20 Score=15.81 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=29.1
Q ss_pred HHHHHHCC-CCCEEEEEECCHHHHHHH-HHHHHCCCEEEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 66763135-664167320465675667-8897488589997896999888985101566081899999999998549819
Q gi|254780927|r 322 FMAMMCCA-AGISHITETIFENRFMHV-QELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGET 399 (430)
Q Consensus 322 la~laa~A-~G~s~I~e~i~e~R~~~~-~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa~~ia~L~a~g~~ 399 (430)
+.+|+-+. +|.-.++|+ .+|.+.+ .+|.++|+++.+.- ...|--.+- +.++..|--.++.|+++ |.+.|.+
T Consensus 11 yvvL~n~Td~Gaktlke~--p~R~~av~~~les~G~k~~~~y---~T~GeYD~V-~i~EapDda~~~~~~l~-l~s~Gnv 83 (104)
T COG4274 11 YVVLSNFTDQGAKTLKET--PKRAAAVRALLESMGGKVKEQY---WTLGEYDVV-AIVEAPDDAVATRFSLA-LASRGNV 83 (104)
T ss_pred HHHHHHCCHHHHHHHHHC--HHHHHHHHHHHHHCCCEEEEEE---EEECCCCEE-EEEECCCHHHHHHHHHH-HHHCCCE
T ss_conf 244540467677787518--7789999999997195787888---860122189-99735977899999999-8826974
No 66
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=43.19 E-value=23 Score=15.40 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 83699999999999749899992774114202452599943666586444023431132110225332333210453058
Q gi|254780927|r 45 PDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPG 124 (430)
Q Consensus 45 ~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G 124 (430)
+..+++..+.++++..+.++.+.... .++..+.++- ..+.. | +. . +...++|..|. +|...|
T Consensus 50 ~t~~El~g~~~am~~~~~~~~~~~~~-~~D~~GTGGd---g~~T~---N----iS-----t-~~a~v~Aa~G~-~V~kHG 111 (339)
T PRK00188 50 ETVDEIAGAARAMREHATPVPVPPGD-AVDIVGTGGD---GANTF---N----IS-----T-AAAFVAAAAGV-KVAKHG 111 (339)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCC-CEEECCCCCC---CCCCC---C----CC-----H-HHHHHHHCCCC-CEEEEC
T ss_conf 89999999999999958978999888-2214689999---87766---6----52-----8-99999971899-522037
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 6633320121234333210332245
Q gi|254780927|r 125 GCAIGTRPVDLFVDSLKSLGVVIKI 149 (430)
Q Consensus 125 ~~~l~~RP~~~l~~~L~~lGa~i~~ 149 (430)
+-++..+- --.|.|+.+|+++..
T Consensus 112 nr~its~~--GsaD~Le~lG~~~~~ 134 (339)
T PRK00188 112 NRSVSSKS--GSADVLEALGINLDL 134 (339)
T ss_pred CCCCCCCC--CHHHHHHHHCCCCCC
T ss_conf 89778876--768999981776689
No 67
>TIGR02592 cas_Cas5h CRISPR-associated protein Cas5, Hmari subtype; InterPro: IPR013421 This entry represents a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeats, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi..
Probab=42.18 E-value=12 Score=17.30 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=8.1
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 21234333210332245
Q gi|254780927|r 133 VDLFVDSLKSLGVVIKI 149 (430)
Q Consensus 133 ~~~l~~~L~~lGa~i~~ 149 (430)
.+...+...+.+++|..
T Consensus 59 y~~f~~~~~~i~i~v~~ 75 (268)
T TIGR02592 59 YDEFLEKRKKIAIQVVS 75 (268)
T ss_pred CHHHCCCHHHCCCEECC
T ss_conf 61120201123203017
No 68
>pfam12224 Amidoligase_2 Putative amidoligase enzyme. This family of proteins are likely to act as amidoligase enzymes Protein in this family are found in conserved gene neighborhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes).
Probab=40.19 E-value=25 Score=15.11 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=8.9
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 59989987501454432
Q gi|254780927|r 202 EVVDLAHCLNSMGAKIS 218 (430)
Q Consensus 202 ~i~~t~~~L~~~Gv~I~ 218 (430)
.++.+++.|++.|+.+.
T Consensus 89 ~l~~l~~~Lr~~ga~~t 105 (250)
T pfam12224 89 QLQELVRALRRAGAKGT 105 (250)
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999999998288346
No 69
>PRK07777 aminotransferase; Validated
Probab=39.98 E-value=25 Score=15.08 Aligned_cols=47 Identities=13% Similarity=-0.038 Sum_probs=22.9
Q ss_pred HHHHHHHCCCCCEEEEEE--CCH-HHHHHHHHHHHCCCEEEEECCEEEEE
Q ss_conf 466763135664167320--465-67566788974885899978969998
Q gi|254780927|r 321 QFMAMMCCAAGISHITET--IFE-NRFMHVQELVRLGARISLSGQTARVE 367 (430)
Q Consensus 321 ~la~laa~A~G~s~I~e~--i~e-~R~~~~~eL~klG~~v~~~~d~l~I~ 367 (430)
+.++..++..+...+.+. .+. .|-...+.|.++|.++..-+-++.+.
T Consensus 270 Q~a~~~al~~~~~~~~~~~~~~~~rrd~~~~~L~~~g~~~~~p~G~~f~~ 319 (386)
T PRK07777 270 QPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEAGFAVHDSAGTYFLC 319 (386)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEE
T ss_conf 99999998687599999999999999999999997698871798268998
No 70
>pfam03484 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=39.65 E-value=26 Score=15.05 Aligned_cols=24 Identities=13% Similarity=0.387 Sum_probs=11.9
Q ss_pred HHHHHHHCCCCEEEECCCEEEEEC
Q ss_conf 468897526743674451267532
Q gi|254780927|r 274 VFKVMRQTGVDIDIIDEGIRVRWN 297 (430)
Q Consensus 274 ~l~iL~~mGa~i~~~~~~i~V~~~ 297 (430)
+.++|++||++++..++.+.|..+
T Consensus 24 i~~~L~~lg~~~~~~~~~~~v~vP 47 (69)
T pfam03484 24 IKKILKRLGFKVEEDEDTLKVTVP 47 (69)
T ss_pred HHHHHHHCCCEEEECCCEEEEECC
T ss_conf 999999869989947986999899
No 71
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=38.64 E-value=15 Score=16.64 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=57.0
Q ss_pred CEEEEE-EECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCC------CCCCCEECCCCHHCCH
Q ss_conf 113566-504444687332332220159989987501454432024432120255422------2234200143100001
Q gi|254780927|r 177 ATQVMM-MVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSL------SGTRHRILPDRIEAGT 249 (430)
Q Consensus 177 ~~s~lL-laA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l------~~~~~~V~~D~ssAa~ 249 (430)
-.|+.| |+++-+.|+|||-||.- +-|.++|++++..+-+.++-.=+..| +-.+.+..+-.+--
T Consensus 17 h~g~vlWlTGLSGsGKsTiA~Al~--------~~L~~~G~~~~~LDGDnvR~gL~~dLGFS~~DR~eNIRRigEVa~L-- 86 (187)
T TIGR00455 17 HRGVVLWLTGLSGSGKSTIANALE--------KKLEKKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKL-- 86 (187)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH--------HHHHHCCCEEEEECCCEEECCCCCCCCCCHHHHCCCCCEEHHHHHH--
T ss_conf 973898511688563579999999--------9999669749997586342477888888856705688353264677--
Q ss_pred HHHHCCCCCCCEEEECC-CCCC-CC------------CHHHHHHHCCCCE--EEECCCEEEEECCCCCCEEEEECCC
Q ss_conf 00000124442010023-4564-21------------0468897526743--6744512675326764315762153
Q gi|254780927|r 250 YAMAVAMTGGDVILKMT-DSSL-LK------------TVFKVMRQTGVDI--DIIDEGIRVRWNGEKLRPVDVITAP 310 (430)
Q Consensus 250 fl~Aaalt~g~i~i~n~-~~~~-~~------------~~l~iL~~mGa~i--~~~~~~i~V~~~~~~l~~~di~~~~ 310 (430)
| .-.|-|.|.=+ .|-- .| .|++|+-++--.| ..+..+++-++..+.++.+.=.++|
T Consensus 87 -~----~~~G~i~ltsfISPyR~~R~~vR~~~~~~Gl~F~Evfv~~PL~vcE~RDPKGLYkKAR~GEIk~FTGID~p 158 (187)
T TIGR00455 87 -L----VRNGVIVLTSFISPYRADRQMVRELIEEGGLEFIEVFVKCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSP 158 (187)
T ss_pred -H----HHCCEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf -7----64793899842177666789998875405736899721788686326898502388646888656787887
No 72
>PRK11059 regulatory protein CsrD; Provisional
Probab=38.24 E-value=27 Score=14.91 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHCCCEEEEEC----------------CEEEEECCCCCEEEEEEE-C-CHHHHHHHHHHHHHCCCEEEEECCCEEC
Q ss_conf 788974885899978----------------969998889851015660-8-1899999999998549819992433011
Q gi|254780927|r 347 VQELVRLGARISLSG----------------QTARVEGVQGLRGAPVMA-T-DLRASVSLVIAALAAQGETEISRVYHLD 408 (430)
Q Consensus 347 ~~eL~klG~~v~~~~----------------d~l~I~G~~~l~g~~v~~-~-DHRiaMa~~ia~L~a~g~~~I~~~~~i~ 408 (430)
+..|+++|+++.+++ |.+.|++.- .+ .++. . |..+.=++.-++-..+=.++=+++|.-
T Consensus 541 l~~L~~lG~~~aiDdFG~g~sSl~YLk~lpvd~LKID~Sf-Vr--~I~~~~enq~~V~sIi~~a~~l~~~VIAEGVEt~- 616 (642)
T PRK11059 541 LRMLRGLGCRLAVDQAGLTVVSTSYIKELNVELIKLHPSL-VR--NIHQRTENQLFVRSLVGACAGTETQVFAEGVESR- 616 (642)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHH-HC--CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCH-
T ss_conf 9999976987999899997666899963999999988888-63--7126931079999999999867997999623869-
Q ss_pred CCCCCHHHHHHHCCCE
Q ss_conf 7784878899866978
Q gi|254780927|r 409 RGFECLEKKLSRCGAL 424 (430)
Q Consensus 409 ksyp~f~~~L~~LGa~ 424 (430)
.-|+.|+.+|..
T Consensus 617 ----~q~~~L~~lGvd 628 (642)
T PRK11059 617 ----EEWQTLQILGVS 628 (642)
T ss_pred ----HHHHHHHHCCCC
T ss_conf ----999999980998
No 73
>PRK07324 transaminase; Validated
Probab=37.77 E-value=27 Score=14.86 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=16.8
Q ss_pred CCCCCCCCCHH-HHHHHHHHHCCCCCC
Q ss_conf 58663332012-123433321033224
Q gi|254780927|r 123 PGGCAIGTRPV-DLFVDSLKSLGVVIK 148 (430)
Q Consensus 123 ~G~~~l~~RP~-~~l~~~L~~lGa~i~ 148 (430)
+||.-+-..|. ..+.+..+.+|+++.
T Consensus 103 pGD~Viv~~P~Y~~~~~~~~~~G~~v~ 129 (373)
T PRK07324 103 PGDHVISVYPTYQQLYDIPESLGAEVD 129 (373)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCEEE
T ss_conf 999899889985779999998398765
No 74
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=37.57 E-value=28 Score=14.84 Aligned_cols=102 Identities=15% Similarity=0.082 Sum_probs=48.0
Q ss_pred CCC-HHHHHHHC--CCCEEEECCCEEEEECCCC----CCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHH
Q ss_conf 210-46889752--6743674451267532676----4315762153566642101346676313566416732046567
Q gi|254780927|r 271 LKT-VFKVMRQT--GVDIDIIDEGIRVRWNGEK----LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENR 343 (430)
Q Consensus 271 ~~~-~l~iL~~m--Ga~i~~~~~~i~V~~~~~~----l~~~di~~~~~pg~~~D~~p~la~laa~A~G~s~I~e~i~e~R 343 (430)
+|+ ++.-|+.| .++-.--| +.+..++.+ +.+-+...-.+ .|.+= +.|++=+--=.+.|+ +--.|
T Consensus 232 DrI~l~~~L~~L~p~peSvPiN--~L~~~~GTP~~E~L~~~~~~~L~~----~~~Lk-~iA~ari~mP~~~iR--lagGR 302 (350)
T TIGR00433 232 DRIGLALALANLSPEPESVPIN--FLVKIEGTPAYEKLADGEVKKLSA----DDALK-TIALARIIMPKAEIR--LAGGR 302 (350)
T ss_pred HHHHHHHHHHCCCCCCCEECCC--CEECCCCCCCHHHHCCCCCCCCCH----HHHHH-HHHHHHHHCCCCEEE--EECCE
T ss_conf 9999999975277678701113--202688885344315888673388----99999-999988654311001--00251
Q ss_pred H---HHHHH----HHHCCCEEEEECCEEEEECCCCCEEEEEEECCHHHHHH
Q ss_conf 5---66788----97488589997896999888985101566081899999
Q gi|254780927|r 344 F---MHVQE----LVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVS 387 (430)
Q Consensus 344 ~---~~~~e----L~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa 387 (430)
. +..++ +-.+|++-...+|.|...|.++- ..||.+...
T Consensus 303 ~~~m~e~~~kea~~~~ag~Nsif~G~yLtT~g~~~e------D~D~~~l~~ 347 (350)
T TIGR00433 303 EVNMKELQQKEAMCFMAGANSIFVGDYLTTTGQPPE------DEDKKLLAK 347 (350)
T ss_pred EEECCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCC------HHHHHHHHH
T ss_conf 450476754899999984212304640024865886------178999986
No 75
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=36.95 E-value=28 Score=14.78 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=9.4
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 1234333210332245
Q gi|254780927|r 134 DLFVDSLKSLGVVIKI 149 (430)
Q Consensus 134 ~~l~~~L~~lGa~i~~ 149 (430)
..+-+-|.++|+++++
T Consensus 115 ~l~~~~l~~~Gi~~~~ 130 (391)
T PRK08133 115 SLFEKIFARFGIETTF 130 (391)
T ss_pred HHHHHHHHCCCEEEEE
T ss_conf 9999874107844446
No 76
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 . Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=36.22 E-value=13 Score=16.93 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCCCEECCCCHHCCHHHHHCCCCCCCEEEECCCCCC------C-C------CHHHHHHHCCCCEE
Q ss_conf 234200143100001000001244420100234564------2-1------04688975267436
Q gi|254780927|r 235 GTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSL------L-K------TVFKVMRQTGVDID 286 (430)
Q Consensus 235 ~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~------~-~------~~l~iL~~mGa~i~ 286 (430)
+-+|.|-|.- || |.+|||..+-++|++.+.+-= . | --+.-|.+-|+..-
T Consensus 99 gI~~e~vPGv-Ss--f~AAAA~l~~ELT~P~vsQtvilTR~eG~RtPmPe~E~l~~lA~hgaTm~ 160 (252)
T TIGR01465 99 GIPYEVVPGV-SS--FFAAAAALGAELTVPEVSQTVILTRAEGRRTPMPEGEKLADLAKHGATMA 160 (252)
T ss_pred CCCEEEECCC-HH--HHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHH
T ss_conf 8977986887-38--98999973001478840342446754343545776678998874123135
No 77
>TIGR03549 conserved hypothetical protein TIGR03549. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. This family has an OsmC-like N-terminal domain. It shares a central domain, modeled by pfam02624 and TIGR00702, with other families of smaller proteins. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may be fortuitous.
Probab=35.15 E-value=19 Score=15.90 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCCEEEECCCC-HHH-HHHHHHHHHHCCCEEEEE
Q ss_conf 9999999974699699986983-699-999999999749899992
Q gi|254780927|r 25 SLPVMIASLLTSETLTLENIPD-LAD-VKLLIRILRSHGVEILSD 67 (430)
Q Consensus 25 s~Ral~aaaLa~g~s~i~n~~~-s~D-~~~~~~~l~~lG~~i~~~ 67 (430)
++.+|....-++..+-|.+--. .+| +..|-+.|..||.+|+.-
T Consensus 135 a~~~l~~~~~~~~~TfI~GKDa~LE~sIa~m~~~L~~LGf~IEea 179 (718)
T TIGR03549 135 AQALLMGTPDSGASTYIEGKDLPLEQTIANMTAILADLGMKIEIA 179 (718)
T ss_pred HHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEH
T ss_conf 787725788988741323787438999999999998748631105
No 78
>PRK07050 cystathionine beta-lyase; Provisional
Probab=35.08 E-value=30 Score=14.59 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=10.7
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 1234333210332245
Q gi|254780927|r 134 DLFVDSLKSLGVVIKI 149 (430)
Q Consensus 134 ~~l~~~L~~lGa~i~~ 149 (430)
..+-.-|+++|+++++
T Consensus 119 ~~~~~~l~~~Gi~v~f 134 (394)
T PRK07050 119 DFGEWLAKDFGITVRF 134 (394)
T ss_pred HHHHHHHHCCCEEEEE
T ss_conf 9999875318879999
No 79
>PRK08912 hypothetical protein; Provisional
Probab=35.00 E-value=30 Score=14.58 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=14.1
Q ss_pred HHHHHHHHCCCEEEEECCEEEEE
Q ss_conf 66788974885899978969998
Q gi|254780927|r 345 MHVQELVRLGARISLSGQTARVE 367 (430)
Q Consensus 345 ~~~~eL~klG~~v~~~~d~l~I~ 367 (430)
...+.|.++|..+..-+-++.+.
T Consensus 297 ~l~~~L~~~g~~~~~~~G~~~~~ 319 (387)
T PRK08912 297 RLAAGLRRIGFPVLPSQGTYFLT 319 (387)
T ss_pred HHHHHHHHCCCEEECCCCEEEEE
T ss_conf 99999997698562798158998
No 80
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=34.77 E-value=31 Score=14.56 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 1599899875014544
Q gi|254780927|r 201 PEVVDLAHCLNSMGAK 216 (430)
Q Consensus 201 P~i~~t~~~L~~~Gv~ 216 (430)
|-+..++++|++.|.+
T Consensus 66 P~v~~la~~l~~~g~~ 81 (334)
T PRK00652 66 PVVIWLAEQLQARGVK 81 (334)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999976993
No 81
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=34.30 E-value=26 Score=14.99 Aligned_cols=34 Identities=38% Similarity=0.720 Sum_probs=19.3
Q ss_pred HHCCCC--CEEEEE-----------ECCHHHHHHHH-HHHHCCCE-EEE
Q ss_conf 313566--416732-----------04656756678-89748858-999
Q gi|254780927|r 326 MCCAAG--ISHITE-----------TIFENRFMHVQ-ELVRLGAR-ISL 359 (430)
Q Consensus 326 aa~A~G--~s~I~e-----------~i~e~R~~~~~-eL~klG~~-v~~ 359 (430)
+|-|.| +|||-| .+.+.|++-+. .+.|||.+ +..
T Consensus 278 ~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~~RLGl~~i~~ 326 (487)
T TIGR00563 278 ACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENLDRLGLTIIKV 326 (487)
T ss_pred EECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 1148457047677424797208988621257889999998618837887
No 82
>TIGR00263 trpB tryptophan synthase, beta subunit; InterPro: IPR006654 Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan , : L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O It has two functional domains, each found in bacteria and plants on a separate subunit: alpha chain (IPR002028 from INTERPRO) is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and beta chain is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together on a single multifunctional protein . The beta chain of the enzyme, represented here, requires pyridoxal-phosphate as a cofactor. The pyridoxal-phosphate group is attached to a lysine residue. The region around this lysine residue also contains two histidine residues which are part of the pyridoxal-phosphate binding site.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process.
Probab=32.89 E-value=27 Score=14.92 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=41.6
Q ss_pred HHHHHCC-CEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCC----------CC-CCCCCC-CEEEE
Q ss_conf 9999749-89999277411420245259994366658644402343113211022----------53-323332-10453
Q gi|254780927|r 55 RILRSHG-VEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVI----------GP-LLAREG-YARIS 121 (430)
Q Consensus 55 ~~l~~lG-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l----------~~-lla~~~-~~~v~ 121 (430)
+.=+++| ++|=-+.+. -+|.-+=++.|+-+-..|+++||=.-... ++ .+|++| ++.|
T Consensus 63 nlt~~~Gg~kiYLKRED---------LnHTGAHKiNNalGQ~LLAKrMGK~R~IAETGAGQHGVATAtaaAllGl~C~v- 132 (412)
T TIGR00263 63 NLTEKLGGAKIYLKRED---------LNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEV- 132 (412)
T ss_pred HHHHHCCCCEEEEECHH---------HCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEE-
T ss_conf 99985389668861101---------04654358999999999998728935887408980379999999971895598-
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 0586633-3201212343332103322456861489995024433
Q gi|254780927|r 122 LPGGCAI-GTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRG 165 (430)
Q Consensus 122 l~G~~~l-~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g 165 (430)
+-|-+-. |.||. |.=||.|||+|. |++--.+.||-
T Consensus 133 YMGa~DV~RQ~pN---VFRMellGA~V~------pV~sGs~TLKD 168 (412)
T TIGR00263 133 YMGAEDVERQKPN---VFRMELLGAKVV------PVTSGSGTLKD 168 (412)
T ss_pred ECCCCCHHHCCCC---HHHHHHCCCEEE------EECCCCCCHHH
T ss_conf 3486135145775---234513778683------30157870378
No 83
>KOG2263 consensus
Probab=32.61 E-value=33 Score=14.33 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=19.8
Q ss_pred CCCEEEECCCCC--C----C---C------CHHHHHHHCCCCEEEECC
Q ss_conf 442010023456--4----2---1------046889752674367445
Q gi|254780927|r 258 GGDVILKMTDSS--L----L---K------TVFKVMRQTGVDIDIIDE 290 (430)
Q Consensus 258 ~g~i~i~n~~~~--~----~---~------~~l~iL~~mGa~i~~~~~ 290 (430)
-|.|+|.|+..- + . | -..+=|++.|.++-.-++
T Consensus 560 TgPvTiL~WSF~R~D~~~~~~~~QiALaikDEV~DLEkaGikVIQiDE 607 (765)
T KOG2263 560 TGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGIKVIQIDE 607 (765)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECH
T ss_conf 476589972353677650789999999888788789872965999570
No 84
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=30.72 E-value=36 Score=14.13 Aligned_cols=84 Identities=18% Similarity=0.372 Sum_probs=43.2
Q ss_pred CCHHHHHHHCCCCEEEECCC-EE---EEECCCCCCEEEEEC--------------------CCCCCCCCCCH--------
Q ss_conf 10468897526743674451-26---753267643157621--------------------53566642101--------
Q gi|254780927|r 272 KTVFKVMRQTGVDIDIIDEG-IR---VRWNGEKLRPVDVIT--------------------APFPGFPTDLQ-------- 319 (430)
Q Consensus 272 ~~~l~iL~~mGa~i~~~~~~-i~---V~~~~~~l~~~di~~--------------------~~~pg~~~D~~-------- 319 (430)
|.+...=+|+|.+++...+. ++ ...+ .+..+++++. ..+ +.|+=
T Consensus 348 kSIV~Lakqlgir~d~~~~~~a~fveFtAq-tRMSGinl~nGr~~rKGavdAIk~~V~~~~G~i---p~dlD~av~qVa~ 423 (675)
T TIGR01497 348 KSIVELAKQLGIRIDDKKSESAEFVEFTAQ-TRMSGINLDNGREVRKGAVDAIKKFVEERKGRI---PKDLDEAVDQVAK 423 (675)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
T ss_conf 688888878086101474532321013233-334544389884362276178878987637977---8376788999873
Q ss_pred ----HHHHHHHHCCCCCEEEEEECCH---HHHHHHHHHHHCCCEEE-EECC
Q ss_conf ----3466763135664167320465---67566788974885899-9789
Q gi|254780927|r 320 ----AQFMAMMCCAAGISHITETIFE---NRFMHVQELVRLGARIS-LSGQ 362 (430)
Q Consensus 320 ----p~la~laa~A~G~s~I~e~i~e---~R~~~~~eL~klG~~v~-~~~d 362 (430)
|..+++-.--=|.-.+||.|+. .|| ++|+|||++.. +++|
T Consensus 424 ~GgTPLvVc~dn~iyGVIyLKDiVK~Gi~ERF---~qLR~~GikTiM~TGD 471 (675)
T TIGR01497 424 QGGTPLVVCVDNKIYGVIYLKDIVKSGIKERF---EQLRKMGIKTIMLTGD 471 (675)
T ss_pred CCCCCEEEEECCEEEEEEEEECCCCCCHHHHH---HHHHHCCCEEEEECCC
T ss_conf 28984799975778988987301378604578---8872258668997289
No 85
>PRK05939 hypothetical protein; Provisional
Probab=29.97 E-value=37 Score=14.05 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=10.3
Q ss_pred HHHHHHHHHCCCCCCCC
Q ss_conf 12343332103322456
Q gi|254780927|r 134 DLFVDSLKSLGVVIKID 150 (430)
Q Consensus 134 ~~l~~~L~~lGa~i~~~ 150 (430)
..+++-|+++|++++.-
T Consensus 99 ~~l~~~l~~~GI~v~~v 115 (396)
T PRK05939 99 NSLLGTLQGLGVEVTMV 115 (396)
T ss_pred HHHHHHHHHCCEEEEEE
T ss_conf 99999865318699998
No 86
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,. 10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=28.93 E-value=33 Score=14.37 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=14.1
Q ss_pred HHHHHHCCCEEEE----------ECCEEEEECC
Q ss_conf 7889748858999----------7896999888
Q gi|254780927|r 347 VQELVRLGARISL----------SGQTARVEGV 369 (430)
Q Consensus 347 ~~eL~klG~~v~~----------~~d~l~I~G~ 369 (430)
++.|.+.|.+||- -.|++.|+.+
T Consensus 257 ~e~l~r~GrDiEk~VLaRAv~~hL~dRv~Vy~N 289 (294)
T TIGR00655 257 VEDLIRAGRDIEKVVLARAVKLHLEDRVLVYEN 289 (294)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 789986067512678999999983281788778
No 87
>pfam00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.
Probab=28.86 E-value=38 Score=13.93 Aligned_cols=28 Identities=7% Similarity=0.284 Sum_probs=16.2
Q ss_pred CCHHHHHHHC--CCCE--EEECCCEEEEECCC
Q ss_conf 1046889752--6743--67445126753267
Q gi|254780927|r 272 KTVFKVMRQT--GVDI--DIIDEGIRVRWNGE 299 (430)
Q Consensus 272 ~~~l~iL~~m--Ga~i--~~~~~~i~V~~~~~ 299 (430)
+.+.++++++ +..+ +..++.+.|.....
T Consensus 73 k~l~divr~lp~~~~i~~~~~~~~l~I~~~~~ 104 (120)
T pfam00712 73 RKFLDIVRALPDDKDVKLSVNEDRLLIISGNS 104 (120)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCEEEEEECCE
T ss_conf 99889998399998389998399999997972
No 88
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=28.12 E-value=39 Score=13.85 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=8.6
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 34333210332245
Q gi|254780927|r 136 FVDSLKSLGVVIKI 149 (430)
Q Consensus 136 l~~~L~~lGa~i~~ 149 (430)
+-..|.++|+++++
T Consensus 121 ~~~~l~~~Gi~~~~ 134 (397)
T PRK07504 121 VETLLPRYGIESTL 134 (397)
T ss_pred HHHHHHCCCEEEEE
T ss_conf 99998607858998
No 89
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=28.10 E-value=39 Score=13.84 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEE-CCCEECCCCCCHHHHHH-HCC
Q ss_conf 81899999999998549819992-43301177848788998-669
Q gi|254780927|r 380 TDLRASVSLVIAALAAQGETEIS-RVYHLDRGFECLEKKLS-RCG 422 (430)
Q Consensus 380 ~DHRiaMa~~ia~L~a~g~~~I~-~~~~i~ksyp~f~~~L~-~LG 422 (430)
.+.|.+| | ..+|-+++. +.|.++ |.++||+ +||
T Consensus 372 ~e~r~~~-----G-i~~~liRlSVGlEd~~----DLi~DL~qALg 406 (406)
T PRK07810 372 PEGRAAI-----G-LGDGVVRISVGLEDTD----DLIADLDRALG 406 (406)
T ss_pred HHHHHHC-----C-CCCCEEEEEECCCCHH----HHHHHHHHHCC
T ss_conf 9899866-----9-7949599993219999----99999997549
No 90
>PRK07671 cystathionine beta-lyase; Provisional
Probab=27.70 E-value=40 Score=13.80 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=11.6
Q ss_pred HHHHHHHHHCCCCCCCC
Q ss_conf 12343332103322456
Q gi|254780927|r 134 DLFVDSLKSLGVVIKID 150 (430)
Q Consensus 134 ~~l~~~L~~lGa~i~~~ 150 (430)
..+-+.|+++|+++++-
T Consensus 103 ~l~~~~l~~~Gi~v~fv 119 (377)
T PRK07671 103 RVMTKVLNRFGIEHTFV 119 (377)
T ss_pred HHHHHHHHHCCCEEEEE
T ss_conf 99998886369769994
No 91
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458; InterPro: IPR006355 These sequences are all members of the IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. .
Probab=27.63 E-value=32 Score=14.40 Aligned_cols=134 Identities=16% Similarity=0.093 Sum_probs=65.2
Q ss_pred HHHHHHHHHCCCCCCCCCCCEEEEEEC-----CCCCCCCCCCCCCCCCC----EE---EEEEECCCCCCCCCCCCCCCCH
Q ss_conf 123433321033224568614899950-----24433333334346661----13---5665044446873323322201
Q gi|254780927|r 134 DLFVDSLKSLGVVIKIDGGYVDARVSS-----KGLRGTSYTFPKVSVGA----TQ---VMMMVASLSHGDTSIYNAAREP 201 (430)
Q Consensus 134 ~~l~~~L~~lGa~i~~~~g~~p~~i~g-----~~l~g~~i~l~~~S~q~----~s---~lLlaA~~a~G~t~I~~~~~~P 201 (430)
+.+++=|++||.+|+.++=..|+.+-. ++++|--+.-|.+-..| || |..|+- +.|-
T Consensus 53 ~~l~~rLqrLgfdisE~ev~tpapaa~q~l~e~~lRP~Llv~D~vl~~FdgIdTS~PNcVV~g~------------a~E~ 120 (258)
T TIGR01458 53 RDLVERLQRLGFDISEEEVITPAPAAAQLLKEKKLRPYLLVDDDVLEEFDGIDTSDPNCVVMGE------------AEES 120 (258)
T ss_pred HHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEC------------CCCC
T ss_conf 9999998770773214421067789999997468995167776855325756678987589825------------7887
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCHHCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf -5998998750145443202443212025542222342001431000010000012444201002345642104688975
Q gi|254780927|r 202 -EVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQ 280 (430)
Q Consensus 202 -~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~~l~iL~~ 280 (430)
.++. |=+.|=+=++...+--|.+.-..+|+- +-|=....+.|..|.- ...++...++...+-..|.+-|+.
T Consensus 121 Fsyq~---~N~AFr~L~d~~kP~LI~~gkgryykr----~dGl~ldvGpf~~ALe-yat~~ka~vvGKPs~~fF~~al~a 192 (258)
T TIGR01458 121 FSYQR---LNRAFRVLLDLEKPLLIALGKGRYYKR----KDGLALDVGPFVKALE-YATDIKAEVVGKPSKEFFKEALRA 192 (258)
T ss_pred CCHHH---HHHHHHHHHCCCCCCEEEECCCEEEEE----CCCCCCCCHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHH
T ss_conf 34888---888998874288961576257411221----3787116007999986-422877898418885899888662
Q ss_pred CCCCEEE
Q ss_conf 2674367
Q gi|254780927|r 281 TGVDIDI 287 (430)
Q Consensus 281 mGa~i~~ 287 (430)
.|++=+.
T Consensus 193 ~G~epee 199 (258)
T TIGR01458 193 LGVEPEE 199 (258)
T ss_pred CCCCCCE
T ss_conf 5888102
No 92
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=27.18 E-value=21 Score=15.58 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=19.4
Q ss_pred CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 323332104530586633320121234333210
Q gi|254780927|r 111 LLAREGYARISLPGGCAIGTRPVDLFVDSLKSL 143 (430)
Q Consensus 111 lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~l 143 (430)
++++.|.-.|-+|||+.|-++-+..++..+.++
T Consensus 57 ~~v~~Gv~KvRlTGGEPLlR~~l~~lv~~~~~~ 89 (346)
T TIGR02666 57 AFVGLGVRKVRLTGGEPLLRKDLVELVARLAAL 89 (346)
T ss_pred HHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHC
T ss_conf 999749716875277744136758999999842
No 93
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.28 E-value=42 Score=13.64 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=10.2
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 234333210332245
Q gi|254780927|r 135 LFVDSLKSLGVVIKI 149 (430)
Q Consensus 135 ~l~~~L~~lGa~i~~ 149 (430)
.+-+.|.++|+++++
T Consensus 124 l~~~~l~~~Gi~v~f 138 (436)
T PRK07812 124 LFHYTLPKLGIEVSF 138 (436)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999997652874169
No 94
>PRK09082 putative aminotransferase; Validated
Probab=26.01 E-value=43 Score=13.60 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 4444687332332220159989987501454432
Q gi|254780927|r 185 ASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKIS 218 (430)
Q Consensus 185 A~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~ 218 (430)
+.+-.|..+|. -+|++.....+++.+|+++.
T Consensus 110 al~~pGD~Vlv---~~P~Y~~y~~~~~~~G~~~v 140 (386)
T PRK09082 110 ALVRPGDEVIV---FDPSYDSYAPAIELAGGRAV 140 (386)
T ss_pred HHCCCCCEEEE---ECCCCHHHHHHHHHCCCEEE
T ss_conf 97599998999---26862879999998499899
No 95
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=25.97 E-value=37 Score=14.03 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 332104530586633320121234333210332245
Q gi|254780927|r 114 REGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI 149 (430)
Q Consensus 114 ~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~ 149 (430)
.+|...|.++||+.|-.+-+..+++.+.+.|-.+..
T Consensus 70 e~Gap~V~itGGEPLLr~dl~eIv~~a~~~g~~v~l 105 (318)
T TIGR03470 70 ECGAPVVSIPGGEPLLHPEIDEIVRGLVARKKFVYL 105 (318)
T ss_pred HCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 849978995188745564799999999975997999
No 96
>PRK05968 hypothetical protein; Provisional
Probab=25.60 E-value=44 Score=13.56 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=9.9
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 1234333210332245
Q gi|254780927|r 134 DLFVDSLKSLGVVIKI 149 (430)
Q Consensus 134 ~~l~~~L~~lGa~i~~ 149 (430)
..+-+.|.++|+++++
T Consensus 117 ~l~~~~l~~~GI~v~~ 132 (389)
T PRK05968 117 RLFGTLLKRMGVEVDY 132 (389)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999888607846999
No 97
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=25.37 E-value=41 Score=13.75 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=15.0
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 321045305866333201212343332103322
Q gi|254780927|r 115 EGYARISLPGGCAIGTRPVDLFVDSLKSLGVVI 147 (430)
Q Consensus 115 ~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i 147 (430)
+|...|.++||+.|-.+-+..+++-.++.|..+
T Consensus 62 ~Gv~~v~~tGGEPllr~D~~ei~~~a~~~G~~~ 94 (375)
T PRK05301 62 LGVLQLHFSGGEPLLRKDLEELVAHARRLGLYT 94 (375)
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 699889961865245668999999999769758
No 98
>PRK12414 putative aminotransferase; Provisional
Probab=24.89 E-value=45 Score=13.47 Aligned_cols=48 Identities=13% Similarity=-0.000 Sum_probs=22.1
Q ss_pred HHHHHHHHCCCCCEEEEE-ECCHHHHH-HHHHHHHCCCEEEEECCEEEEE
Q ss_conf 346676313566416732-04656756-6788974885899978969998
Q gi|254780927|r 320 AQFMAMMCCAAGISHITE-TIFENRFM-HVQELVRLGARISLSGQTARVE 367 (430)
Q Consensus 320 p~la~laa~A~G~s~I~e-~i~e~R~~-~~~eL~klG~~v~~~~d~l~I~ 367 (430)
.+.+++.+..++.....- ..+..|.. ..++|...+..+...+-++.+.
T Consensus 272 ~Q~a~~~~l~~~~~~~~~~~~y~~rrd~l~~~L~~~~~~~~~p~G~fy~~ 321 (384)
T PRK12414 272 MQYAFAEALARPASYLGLSAFYQRKRDLLARELADSRFELLPSEGSFFML 321 (384)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEE
T ss_conf 99999999829824999999999999999997675698787898079999
No 99
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=24.62 E-value=33 Score=14.37 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=30.5
Q ss_pred CCCCEECCCCHHCCHHHHHCCCCCCCEEEECCCCCCC------------CCHHHHHHHCCCCEEE
Q ss_conf 2342001431000010000012444201002345642------------1046889752674367
Q gi|254780927|r 235 GTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLL------------KTVFKVMRQTGVDIDI 287 (430)
Q Consensus 235 ~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~------------~~~l~iL~~mGa~i~~ 287 (430)
+-+|.|.|.-| +|++|||..+-+++++++.+.-. +-.+.-|.++|+..-+
T Consensus 103 gI~yevvPGVs---s~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~~la~~~aTm~I 164 (254)
T COG2875 103 GIPYEVVPGVS---SFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLAALAKHGATMVI 164 (254)
T ss_pred CCCEEEECCCH---HHHHHHHHHCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 99859937905---999999983854405774106999713468789966589999854862686
No 100
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase; InterPro: IPR005965 1-aminocyclopropane-1-carboxylate deaminase (3.5.99.7 from EC) is a pyridoxal phosphate-dependent enzyme which degrades 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketoglutarate. In plants, the latter is a precursor of the ripening hormone ethylene . This family includes all members of this family for which the function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. ; GO: 0008660 1-aminocyclopropane-1-carboxylate deaminase activity, 0030170 pyridoxal phosphate binding, 0009310 amine catabolic process.
Probab=24.55 E-value=24 Score=15.24 Aligned_cols=47 Identities=17% Similarity=0.324 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCCCEEEEEECCHHH-HHHHHHHHHCCCEEEEECCEEEEE
Q ss_conf 346676313566416732046567-566788974885899978969998
Q gi|254780927|r 320 AQFMAMMCCAAGISHITETIFENR-FMHVQELVRLGARISLSGQTARVE 367 (430)
Q Consensus 320 p~la~laa~A~G~s~I~e~i~e~R-~~~~~eL~klG~~v~~~~d~l~I~ 367 (430)
-++-++-.+|+-+..|+|=|||.. +.-+-+|.|-| .+.+-.+-|.+|
T Consensus 288 ~T~eAI~~ca~~Eg~lTDPVYEGKS~~G~i~~ir~g-~~~~G~~vLYaH 335 (352)
T TIGR01274 288 GTLEAIRLCAKLEGVLTDPVYEGKSMAGMIEMIRRG-EFKEGSNVLYAH 335 (352)
T ss_pred HHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHCC-CCCCCCCEEEEE
T ss_conf 579999998632760107654662389999998437-888765067652
No 101
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.51 E-value=46 Score=13.42 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=11.3
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 2343332103322456
Q gi|254780927|r 135 LFVDSLKSLGVVIKID 150 (430)
Q Consensus 135 ~l~~~L~~lGa~i~~~ 150 (430)
.+-+.|+++|+++++-
T Consensus 119 l~~~~l~~~Gi~v~~v 134 (431)
T PRK08248 119 LFAHTLPKLGITVKFV 134 (431)
T ss_pred HHHHHHHCCCEEEEEE
T ss_conf 9874232388799998
No 102
>PRK06234 methionine gamma-lyase; Provisional
Probab=24.28 E-value=46 Score=13.40 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=11.7
Q ss_pred HHHHHHHHHHCCCCCCCC
Q ss_conf 212343332103322456
Q gi|254780927|r 133 VDLFVDSLKSLGVVIKID 150 (430)
Q Consensus 133 ~~~l~~~L~~lGa~i~~~ 150 (430)
...+-+.|.++|+++++-
T Consensus 117 ~~l~~~~l~~~Gi~~~~v 134 (399)
T PRK06234 117 FALLNHGLTRYGVEVTFV 134 (399)
T ss_pred HHHHHHHHHCCCEEEEEE
T ss_conf 999998865168578862
No 103
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=23.70 E-value=47 Score=13.32 Aligned_cols=33 Identities=18% Similarity=0.442 Sum_probs=22.2
Q ss_pred CCEEEECCCCCCCCCHHHHHHHCCCCEEEECCC
Q ss_conf 420100234564210468897526743674451
Q gi|254780927|r 259 GDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEG 291 (430)
Q Consensus 259 g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~ 291 (430)
+++++--+.-..-+.+++-++++|++|....++
T Consensus 155 ~dltV~vLdRpRH~~lI~eir~~Gari~LI~DG 187 (320)
T PRK09479 155 SDLTVVVLDRPRHAELIAEIREAGARVKLISDG 187 (320)
T ss_pred HHCEEEEEECCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 682899986626799999999739849996567
No 104
>pfam00591 Glycos_transf_3 Glycosyl transferase family, a/b domain. This family includes anthranilate phosphoribosyltransferase (TrpD), thymidine phosphorylase. All these proteins can transfer a phosphorylated ribose substrate.
Probab=23.38 E-value=43 Score=13.60 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHHHHCCCC
Q ss_conf 2220159989987501454
Q gi|254780927|r 197 AAREPEVVDLAHCLNSMGA 215 (430)
Q Consensus 197 ~~~~P~i~~t~~~L~~~Gv 215 (430)
.+.+++.....+.|++.|.
T Consensus 123 v~~~~~~~~~a~~l~~lg~ 141 (254)
T pfam00591 123 VYSKELVGPIAEVLERLGE 141 (254)
T ss_pred EECHHHHHHHHHHHHHCCC
T ss_conf 9575886999999997298
No 105
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=23.36 E-value=48 Score=13.28 Aligned_cols=28 Identities=21% Similarity=0.596 Sum_probs=12.5
Q ss_pred EEECCCCCCCCCCH-HHHHHHHHHHCCCC
Q ss_conf 45305866333201-21234333210332
Q gi|254780927|r 119 RISLPGGCAIGTRP-VDLFVDSLKSLGVV 146 (430)
Q Consensus 119 ~v~l~G~~~l~~RP-~~~l~~~L~~lGa~ 146 (430)
.|+++||....--| +..|++.|.+||+.
T Consensus 76 kitISgGGD~ScYP~l~eL~~~l~~~~lp 104 (404)
T TIGR03278 76 KVTISGGGDVSCYPELEELTKGLSDLGLP 104 (404)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 89980798844163199999999866983
No 106
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=22.99 E-value=49 Score=13.24 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=11.5
Q ss_pred EEECCC---CEEEEEECCCCHHHHH
Q ss_conf 982797---3137897696466899
Q gi|254780927|r 5 KIIGGN---KLNGTIAISGAKNASL 26 (430)
Q Consensus 5 ~V~g~~---~L~G~i~vpgSKs~s~ 26 (430)
.|+.|. +-.|.|.+|=..|.+-
T Consensus 9 ~vh~G~~~~~~~g~v~pPIy~sstf 33 (386)
T PRK08045 9 AVRSGLNDDEQYGCVVPPIHLSSTY 33 (386)
T ss_pred HEECCCCCCCCCCCCCCCCCCCCCE
T ss_conf 2438989887899812884377774
No 107
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=22.46 E-value=50 Score=13.17 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 012123433321033224568614899950
Q gi|254780927|r 131 RPVDLFVDSLKSLGVVIKIDGGYVDARVSS 160 (430)
Q Consensus 131 RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g 160 (430)
+-.++++++|++||++.+. +|.-.+.|.|
T Consensus 100 ~~~~~ii~aL~~lGi~a~~-sgRNDl~i~g 128 (338)
T PRK03822 100 ISTSIVLNALNSLGVSAEA-SGRNDLVVKT 128 (338)
T ss_pred HHHHHHHHHHHHCCCCCEE-CCCCCEEEEC
T ss_conf 5389999999973987547-6866779615
No 108
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=22.39 E-value=50 Score=13.16 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=22.7
Q ss_pred EEEECCCCHH-HHHHHHHHHHHCCCEEEEECC
Q ss_conf 9998698369-999999999974989999277
Q gi|254780927|r 39 LTLENIPDLA-DVKLLIRILRSHGVEILSDSS 69 (430)
Q Consensus 39 s~i~n~~~s~-D~~~~~~~l~~lG~~i~~~~~ 69 (430)
.+|...++.+ .|-..++.|+.+||+|.|-+.
T Consensus 46 ~rI~~~LHlt~kTAvL~~tL~~~GA~V~~~~~ 77 (476)
T PTZ00075 46 AKIAGCLHMTVETAVLIETLVALGAEVRWCSC 77 (476)
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 98999982289999999999985986999647
No 109
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=22.00 E-value=40 Score=13.81 Aligned_cols=62 Identities=21% Similarity=0.391 Sum_probs=32.8
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC------CHH-HHHH----------------HHHHHHCCC
Q ss_conf 76431576215356664210134667631356641673204------656-7566----------------788974885
Q gi|254780927|r 299 EKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETI------FEN-RFMH----------------VQELVRLGA 355 (430)
Q Consensus 299 ~~l~~~di~~~~~pg~~~D~~p~la~laa~A~G~s~I~e~i------~e~-R~~~----------------~~eL~klG~ 355 (430)
.++.+++++... ++||.+.|-++|...+ |+| +|-+ .+||-|.|=
T Consensus 45 hRL~G~Eid~~~-------------v~Ac~~RGv~VIq~Dld~GL~~F~D~~FD~ViLsQTLQa~~Np~~iL~EmLRvg~ 111 (205)
T TIGR02081 45 HRLYGIEIDQDG-------------VLACVARGVSVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGR 111 (205)
T ss_pred CEEEEEEECHHH-------------HHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEECHHHHHHHCHHHHHHHHHHHCC
T ss_conf 000102345445-------------9999862520130060034011678876625421356642256899988776738
Q ss_pred EEEE---------ECCEEEEECCCC-CE
Q ss_conf 8999---------789699988898-51
Q gi|254780927|r 356 RISL---------SGQTARVEGVQG-LR 373 (430)
Q Consensus 356 ~v~~---------~~d~l~I~G~~~-l~ 373 (430)
++.+ .-.++...|..| .+
T Consensus 112 ~aIVSFPNFGyW~~R~~i~~~GRMPkVt 139 (205)
T TIGR02081 112 RAIVSFPNFGYWRVRWSILTGGRMPKVT 139 (205)
T ss_pred EEEEECCCCCCHHCHHHEECCCCCCCCC
T ss_conf 5156058877110103111078588788
No 110
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=21.35 E-value=53 Score=13.02 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCEEEE
Q ss_conf 643157621535666--4210134667631356641673
Q gi|254780927|r 300 KLRPVDVITAPFPGF--PTDLQAQFMAMMCCAAGISHIT 336 (430)
Q Consensus 300 ~l~~~di~~~~~pg~--~~D~~p~la~laa~A~G~s~I~ 336 (430)
+++.+-+....||.. .+| +|++.|.-.|...+.
T Consensus 263 RiQdLGvgAmTFP~~gsstD----lAllLAd~hga~~lv 297 (395)
T COG4825 263 RIQDLGVGAMTFPAAGSSTD----LALLLADHHGAALLV 297 (395)
T ss_pred HHHHCCCCEEECCCCCCHHH----HHHHHHHCCCCCEEE
T ss_conf 99862865131366786023----899987415820278
No 111
>COG4771 FepA Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]
Probab=21.26 E-value=51 Score=13.12 Aligned_cols=13 Identities=38% Similarity=0.600 Sum_probs=5.9
Q ss_pred HHHHHHHC-CCEEE
Q ss_conf 99999974-98999
Q gi|254780927|r 53 LIRILRSH-GVEIL 65 (430)
Q Consensus 53 ~~~~l~~l-G~~i~ 65 (430)
.-++||.+ |+.+.
T Consensus 70 l~ealr~vpGV~lt 83 (699)
T COG4771 70 LAEALRTVPGVNLT 83 (699)
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99998428964776
No 112
>TIGR02704 carboxysome_B carboxysome peptide B; InterPro: IPR014077 This entry describes the carboxysome operon protein orfB (protein B of Thiobacillus denitrificans). It distinguishes one of two closely related paralogs encoded by nearby genes in the carboxysome operons of a number of cyanobacteria and chemoautotrophic bacteria. More distantly related proteins are components of other types of shell such as the shell of the ethanolamine degradation organelle..
Probab=21.00 E-value=30 Score=14.58 Aligned_cols=17 Identities=53% Similarity=0.477 Sum_probs=6.8
Q ss_pred CEEEEEECCCCHHHHHH
Q ss_conf 31378976964668999
Q gi|254780927|r 11 KLNGTIAISGAKNASLP 27 (430)
Q Consensus 11 ~L~G~i~vpgSKs~s~R 27 (430)
.|--|=++||=||+++|
T Consensus 9 ~Lv~TrR~pGL~~~sLR 25 (80)
T TIGR02704 9 DLVCTRRIPGLKNASLR 25 (80)
T ss_pred CEEEEECCCCCCCCEEE
T ss_conf 41342025565550256
No 113
>PRK07568 aspartate aminotransferase; Provisional
Probab=20.56 E-value=55 Score=12.92 Aligned_cols=48 Identities=17% Similarity=0.046 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCCCEEEEEE--CCHHHHH-HHHHHHHC-CCEEEEECCEEEEE
Q ss_conf 3466763135664167320--4656756-67889748-85899978969998
Q gi|254780927|r 320 AQFMAMMCCAAGISHITET--IFENRFM-HVQELVRL-GARISLSGQTARVE 367 (430)
Q Consensus 320 p~la~laa~A~G~s~I~e~--i~e~R~~-~~~eL~kl-G~~v~~~~d~l~I~ 367 (430)
.+.++++++-.+..++.+. .|..|.. .++.|.++ |..+..-+-++.+.
T Consensus 272 ~Q~aa~~~l~~~~~~~~~~~~~y~~rrd~~~~~L~~~~g~~~~~P~Ggfyl~ 323 (396)
T PRK07568 272 EQIGAAALLNTPESYFKEVREEYEKRRDILYEGLNKIPGVVCEKPTGAFYII 323 (396)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEE
T ss_conf 9999999985877999999999999999999999707997867888578999
Done!