HHsearch results for GI: 254780927 and protein with PDBid: 1rf6_A
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=99.78 E-value=1.7e-17 Score=132.00 Aligned_cols=287 Identities=18% Similarity=0.243 Sum_probs=160.9
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC---CCCCCCCCCCCCEEEEEEECCC--CCCCCCCCCC--CCC
Q ss_conf 33201212343332103322456861489995024433---3333343466611356650444--4687332332--220
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRG---TSYTFPKVSVGATQVMMMVASL--SHGDTSIYNA--ARE 200 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g---~~i~l~~~S~q~~s~lLlaA~~--a~G~t~I~~~--~~~ 200 (430)
+..+-+...+++|++||++|+.+++. ++|.+.+..+ -...++.-.++ ++..++.+.+ .++.+++.+- ..+
T Consensus 43 ~~s~Dv~~~i~~L~~lG~~i~~~~~~--~~i~g~g~~~~~~~~~~i~~g~sg-t~~r~l~~~~a~~~~~v~~~G~~~l~~ 119 (427)
T 1rf6_A 43 LRGEDVLSTMQVFRDLGVEIEDKDGV--ITVQGVGMAGLKAPQNALNMGNSG-TSIRLISGVLAGADFEVEMFGDDSLSK 119 (427)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEETTE--EEEECCCSSCCCCCSSCEECTTCH-HHHHHHHHHGGGCSSEEEEECCTTGGG
T ss_pred CCCHHHHHHHHHHHHCCCEEEECCCE--EEEEECCCCCCCCCHHHHHHCCCC-EEEECCCCCCCCCCCEECCCCCHHHHC
T ss_conf 90399999999999789989964999--999906887767862667753443-110002221112143334668866626
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC---CCEEECCCCCCCCCCCEECCCCHHCC---HHHHHCCCCCCCEEEECCCCCCCCCH
Q ss_conf 1599899875014544320244---32120255422223420014310000---10000012444201002345642104
Q gi|254780927|r 201 PEVVDLAHCLNSMGAKISGMGS---STITIQGVTSLSGTRHRILPDRIEAG---TYAMAVAMTGGDVILKMTDSSLLKTV 274 (430)
Q Consensus 201 P~i~~t~~~L~~~Gv~I~~~~~---~~i~I~g~~~l~~~~~~V~~D~ssAa---~fl~Aaalt~g~i~i~n~~~~~~~~~ 274 (430)
+.+..+++.|+++|++++..+. -.+.+.|...+++.+|.. |.+|.. ..+.|+.+..+...+.+-.+. .+..
T Consensus 120 RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g~~~~~~~~~~~--~~~S~~~~s~Lllaa~~~~g~~~i~~~~~~-~~~t 196 (427)
T 1rf6_A 120 RPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYEL--PIASAQVKSALMFAALQAKGESVIIEKEYT-RNHT 196 (427)
T ss_dssp SCCHHHHHHHHHTTCEEEEETTTTEEEEEEECCTTCCCCEEEC--SSCCHHHHHHHHHHHTTSSEEEEEECSSCC-CCHH
T ss_pred CCCCHHHHHHHHCCCEEEECCCCCCCEEECCCCCCCCCEEEEC--CCCCHHHHHHHHHCEEECCCCEEEECCCCH-HHHH
T ss_conf 5320123457742847983135563012114778875559953--577775511021101215884456323410-5678
Q ss_pred HHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCC-CEEEEEE-CCHHHHHHHHHH
Q ss_conf 68897526743674451267532676431576215356664210--1346676313566-4167320-465675667889
Q gi|254780927|r 275 FKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAG-ISHITET-IFENRFMHVQEL 350 (430)
Q Consensus 275 l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G-~s~I~e~-i~e~R~~~~~eL 350 (430)
++.|++||++++..++.+.|.+. ..+.+.++.- | .|+ ..+++++|+.+.| ..+|++. ..+.+...++-|
T Consensus 197 ~~~L~~~G~~i~~~~~~i~i~~~-~~~~~~~~~V---p---~D~s~a~~~l~~aal~~g~~i~i~n~~~~~~~~~~~~~l 269 (427)
T 1rf6_A 197 EDMLQQFGGHLSVDGKKITVQGP-QKLTGQKVVV---P---GDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVI 269 (427)
T ss_dssp HHHHHHTTCCCEEETTEEEEEEC-CCCBCCEEEC---C---BCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCHHHHHH
T ss_pred HHHHHHCCCCCCCCCEEEEECCC-EEECCCEEEE---C---CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 99998629842123118998752-1326746991---7---977889999999996699879987789652247898865
Q ss_pred HHCCCEEEEEC------CEEEEECCCCCEEEEEEECCHH----HHHHHHHHHHHCCCEEEEECCCEECCCCC----CHHH
Q ss_conf 74885899978------9699988898510156608189----99999999985498199924330117784----8788
Q gi|254780927|r 351 VRLGARISLSG------QTARVEGVQGLRGAPVMATDLR----ASVSLVIAALAAQGETEISRVYHLDRGFE----CLEK 416 (430)
Q Consensus 351 ~klG~~v~~~~------d~l~I~G~~~l~g~~v~~~DHR----iaMa~~ia~L~a~g~~~I~~~~~i~ksyp----~f~~ 416 (430)
.+||+.++..+ +...+.....+++.+++..++- ....+++++..++|+++|.|+++++.-.. .+.+
T Consensus 270 ~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~d~~p~la~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~ 349 (427)
T 1rf6_A 270 RAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVAD 349 (427)
T ss_dssp HHTTCEEEEEEEETTTTEEEEEEECCCCBCCEECTTSGGGTGGGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHH
T ss_pred HHCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHH
T ss_conf 42254112024322212453202126744222344458763344335556520357732550067778787579999999
Q ss_pred HHHHCCCEEEE
Q ss_conf 99866978999
Q gi|254780927|r 417 KLSRCGALIQR 427 (430)
Q Consensus 417 ~L~~LGa~Ie~ 427 (430)
.|+++|++++.
T Consensus 350 eL~k~G~~i~~ 360 (427)
T 1rf6_A 350 ALNSMGADITP 360 (427)
T ss_dssp HHHTTTCCEEE
T ss_pred HHHHCCCEEEE
T ss_conf 99977997999