HHSEARCH alignment of GI: 254780927 and SCOP domain: d1rf6a_

Alignment
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=100.00  E-value=0  Score=641.92  Aligned_cols=405  Identities=22%  Similarity=0.296  Sum_probs=351.4

Q ss_pred             EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEE
Q ss_conf             38982797313789769646689999999974699699986983699999999999749899992774114202452599
Q gi|254780927|r    3 RIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMH   82 (430)
Q Consensus         3 ~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~   82 (430)
                      |++++ +++|+|+|++|||||++||+|++|+|++|+|+|+|+|+|+|+.+|+++||+||++|+++++...+......   
T Consensus         2 ~~~~~-~~~l~G~i~~pgSKS~s~R~L~laaLa~g~s~i~n~~~s~Dv~~~~~~L~~lG~~i~~~~~~~~I~g~g~~---   77 (427)
T d1rf6a_           2 KLKTN-IRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMA---   77 (427)
T ss_dssp             EECCC-CCCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEECCCSS---
T ss_pred             EECCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCC---
T ss_conf             60368-87717999837868999999999997699899937990499999999999788989975999999916887---


Q ss_pred             EECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEEEC
Q ss_conf             9436665864440234311321102253323332104530586633320121234333210332245--68614899950
Q gi|254780927|r   83 FRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVSS  160 (430)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i~g  160 (430)
                           ..........++++++++||+.+++++. ...+.++|||+|++|||++|+++|++|||++++  +++++|+.+.+
T Consensus        78 -----~~~~~~~~i~~~~sgt~~r~l~~l~a~~-~~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g  151 (427)
T d1rf6a_          78 -----GLKAPQNALNMGNSGTSIRLISGVLAGA-DFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKG  151 (427)
T ss_dssp             -----CCCCCSSCEECTTCHHHHHHHHHHGGGC-SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEEC
T ss_pred             -----CCCCCHHHHHHCCCCEEECCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCEEEECCC
T ss_conf             -----7678615565314430000122222454-3112047981303655542000687639479830355620230247


Q ss_pred             C-CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCE
Q ss_conf             2-443333333434666113566504444687332332220159989987501454432024432120255422223420
Q gi|254780927|r  161 K-GLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHR  239 (430)
Q Consensus       161 ~-~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~  239 (430)
                      . .+++..+.++.+|+|++|++||||++++|.++|.+  .+||+.+|++||++||++|+..+ ++|+|+|++.|++.+|+
T Consensus       152 ~~~~~~~~i~~~~~S~q~ts~lllaa~~~~g~~~i~~--~~~~~~~t~~~L~~~G~~i~~~~-~~i~i~~~~~l~~~~~~  228 (427)
T d1rf6a_         152 TKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIE--KEYTRNHTEDMLQQFGGHLSVDG-KKITVQGPQKLTGQKVV  228 (427)
T ss_dssp             CTTCCCCEEECSSCCHHHHHHHHHHHTTSSEEEEEEC--SSCCCCHHHHHHHHTTCCCEEET-TEEEEEECCCCBCCEEE
T ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEC--CCCCHHHHHHHHHHCCCCCCCCC-EEEEECCCCEECCCEEE
T ss_conf             7887445995357767564435542220589435532--43107789999997399752231-28998863111674698


Q ss_pred             ECCCCHHCCHHHHHCCCC-CCCEEEECCCCCCCCC-HHHHHHHCCCCEEEECCCE-----EEEECCCCCCEEEEECCCCC
Q ss_conf             014310000100000124-4420100234564210-4688975267436744512-----67532676431576215356
Q gi|254780927|r  240 ILPDRIEAGTYAMAVAMT-GGDVILKMTDSSLLKT-VFKVMRQTGVDIDIIDEGI-----RVRWNGEKLRPVDVITAPFP  312 (430)
Q Consensus       240 V~~D~ssAa~fl~Aaalt-~g~i~i~n~~~~~~~~-~l~iL~~mGa~i~~~~~~i-----~V~~~~~~l~~~di~~~~~p  312 (430)
                      ||+|||+|+||++||+++ +++++++|++.++.+. +++++++||+.+++.+...     ........++++++++.++|
T Consensus       229 V~~D~s~A~~~l~aaal~~g~~i~i~~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p  308 (427)
T d1rf6a_         229 VPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIP  308 (427)
T ss_dssp             CCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCHHHHHHHHTTCEEEEEEEETTTTEEEEEEECCCCBCCEECTTSGG
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             58976789999999996799879987789760016788764114530341133232223402331266442223445588


Q ss_pred             CCCCCCHHHHHHHHHCCCCCEEEEE----ECCH-HHHHHH-HHHHHCCCEEEEECCEEEEECCCCCEEEEEEEC-CHHHH
Q ss_conf             6642101346676313566416732----0465-675667-889748858999789699988898510156608-18999
Q gi|254780927|r  313 GFPTDLQAQFMAMMCCAAGISHITE----TIFE-NRFMHV-QELVRLGARISLSGQTARVEGVQGLRGAPVMAT-DLRAS  385 (430)
Q Consensus       313 g~~~D~~p~la~laa~A~G~s~I~e----~i~e-~R~~~~-~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~-DHRia  385 (430)
                      +++ |.+|++++++|+|+|+|+|++    +++| ||+..+ +||+|||+++++++|+++|+|+++++|++|+++ |||+|
T Consensus       309 ~~~-d~~p~la~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~eL~klG~~~~~~~d~l~I~G~~~l~g~~v~s~~DHRia  387 (427)
T d1rf6a_         309 RLI-DELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIG  387 (427)
T ss_dssp             GTG-GGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECCCCCCEEEECTTCHHHH
T ss_pred             CCH-HHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEEECCCCHHHH
T ss_conf             723-4555777765315784000207888889989999999999977997999899999979998847877898819999


Q ss_pred             HHHHHHHHH-CCCEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf             999999985-498199924330117784878899866
Q gi|254780927|r  386 VSLVIAALA-AQGETEISRVYHLDRGFECLEKKLSRC  421 (430)
Q Consensus       386 Ma~~ia~L~-a~g~~~I~~~~~i~ksyp~f~~~L~~L  421 (430)
                      |||+++||. ++|+++|+|++||+||||+||++|++|
T Consensus       388 ma~~i~al~~~~g~~~I~~~~~v~ksyP~F~~~l~~L  424 (427)
T d1rf6a_         388 MMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESL  424 (427)
T ss_dssp             HHHHHHHHTCSSSCEEEETGGGGGGTCTTHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCEEECCCCEEECCCHHHHHHHHHH
T ss_conf             9999999965899699827837978765099999997


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Streptococcus pneumoniae [TaxId: 1313]