Query gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 430
No_of_seqs 127 out of 4002
Neff 7.3
Searched_HMMs 13730
Date Wed Jun 1 11:05:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780927.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ejda_ d.68.2.2 (A:) UDP-N-ac 100.0 0 0 735.3 30.0 418 1-430 1-418 (419)
2 d1g6sa_ d.68.2.2 (A:) 5-enol-p 100.0 0 0 645.3 27.6 406 1-421 1-423 (427)
3 d1rf6a_ d.68.2.2 (A:) 5-enol-p 100.0 0 0 641.9 24.8 405 3-421 2-424 (427)
4 d1p88a_ d.68.2.2 (A:) 5-enol-p 100.0 9.8E-37 7.2E-41 255.7 6.3 209 25-241 1-216 (216)
5 d1ejda_ d.68.2.2 (A:) UDP-N-ac 99.8 7.8E-18 5.7E-22 132.7 18.3 284 129-428 46-348 (419)
6 d1rf6a_ d.68.2.2 (A:) 5-enol-p 99.8 5E-18 3.7E-22 133.9 16.6 287 128-427 43-360 (427)
7 d1g6sa_ d.68.2.2 (A:) 5-enol-p 99.8 4.2E-17 3.1E-21 127.9 16.6 287 128-427 45-361 (427)
8 d1p88a_ d.68.2.2 (A:) 5-enol-p 99.5 1.7E-14 1.2E-18 111.0 10.2 189 181-373 4-208 (216)
9 d1qmha2 d.68.2.1 (A:5-184,A:28 94.6 0.0076 5.5E-07 35.1 2.3 12 274-285 136-147 (239)
10 d1qmha2 d.68.2.1 (A:5-184,A:28 93.0 0.25 1.8E-05 25.2 11.6 67 152-218 69-148 (239)
11 d1lxja_ d.58.48.1 (A:) Hypothe 29.5 13 0.00092 14.1 1.9 37 198-248 21-57 (104)
12 d1jjcb2 a.6.1.1 (B:400-474) Do 27.3 14 0.001 13.8 2.6 21 274-294 25-45 (75)
13 d1o17a2 c.27.1.1 (A:71-343) An 20.8 17 0.0013 13.2 1.3 20 197-216 122-141 (273)
No 1
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]}
Probab=100.00 E-value=0 Score=735.28 Aligned_cols=418 Identities=47% Similarity=0.796 Sum_probs=383.3
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|+||+|+||++|+|+|++|||||+|||+|++|+|++|+|+|+|+|+|+||++|+++||+||++|+++++
T Consensus 1 M~~~~i~g~~~L~G~V~ipgsKS~s~Rali~aaLa~g~s~I~n~l~s~D~~~~~~al~~LG~~I~~~~~----------- 69 (419)
T d1ejda_ 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGS----------- 69 (419)
T ss_dssp CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESSS-----------
T ss_pred CCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEECCE-----------
T ss_conf 986999488904779978883899999999999849989992599019999999999977998998987-----------
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 99943666586444023431132110225332333210453058663332012123433321033224568614899950
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS 160 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g 160 (430)
+.+..........+.+.....+++.+++++++++++...+.++|||+|++|||++++++|++|||+|++++|++|+.+.+
T Consensus 70 ~~I~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~g~~~~~i~g 149 (419)
T d1ejda_ 70 VWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNG 149 (419)
T ss_dssp EEEECTTCCCCEECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETTEEEEECSS
T ss_pred EEEECCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCEEEECCC
T ss_conf 99989997777665545403543200244256652775246666434577742678899985361699628924453378
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEE
Q ss_conf 24433333334346661135665044446873323322201599899875014544320244321202554222234200
Q gi|254780927|r 161 KGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 (430)
Q Consensus 161 ~~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V 240 (430)
+++|++|.++.+|+|++|++||||++++|.+++.++.++||+++|++||++||++|++.+++++.++|.+.+.+.+|+|
T Consensus 150 -~l~g~~~~~~~~Ssq~~s~llla~~~~~g~~~i~~~~~~~~i~~t~~~l~~~G~~i~~~~~~~~~i~g~~~~~~~~~~V 228 (419)
T d1ejda_ 150 -RLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRV 228 (419)
T ss_dssp -SCBCCEEECSSCCHHHHHHHHHHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEECCSCBCCEEEEC
T ss_pred -CCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCCCCCEEE
T ss_conf -8667467458762567788984455237963542024441566677776522010011795499980542346774053
Q ss_pred CCCCHHCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 14310000100000124442010023456421046889752674367445126753267643157621535666421013
Q gi|254780927|r 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQA 320 (430)
Q Consensus 241 ~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p 320 (430)
|||||||+||++||++++++++++|+.++.++.++++|++||+++++.++++.|.....++.++|++++|.|.++.|++|
T Consensus 229 ~~D~ssAa~~~~aa~i~g~~i~i~~~~~~~~~~~~~~l~~mg~~i~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~ 308 (419)
T d1ejda_ 229 LPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQA 308 (419)
T ss_dssp CBCHHHHHHHHHHHHTTTCEEEEESCCGGGCHHHHHHHHHTTCEEEECSSEEEEECTTCCCBCCCEECCSTTSCCGGGHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 57066431133322156865521677806778898876642313997377699997676544300256632234421145
Q ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 46676313566416732046567566788974885899978969998889851015660818999999999985498199
Q gi|254780927|r 321 QFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETE 400 (430)
Q Consensus 321 ~la~laa~A~G~s~I~e~i~e~R~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa~~ia~L~a~g~~~ 400 (430)
.++.+++++.|.++++++.++.|...+.||+|||+++++++|+++|+|+++++|++++++||||||||+||||.++|+++
T Consensus 309 ~~~~~~~~~~G~~~~~~ke~dr~~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiAMa~aia~l~~~g~~~ 388 (419)
T d1ejda_ 309 QFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTV 388 (419)
T ss_dssp HHHHHHHTSBSEEEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCSCCBCCEECCSSHHHHHHHHHHHHHSBEEEE
T ss_pred HHHCCCEEECCCEEEEEECCCHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 54122218736167764023438789999996889799969999997999863761613838999999999981999499
Q ss_pred EECCCEECCCCCCHHHHHHHCCCEEEEECC
Q ss_conf 924330117784878899866978999519
Q gi|254780927|r 401 ISRVYHLDRGFECLEKKLSRCGALIQRIKG 430 (430)
Q Consensus 401 I~~~~~i~ksyp~f~~~L~~LGa~Ie~i~~ 430 (430)
|+|++||+||||+||++|++|||+||||||
T Consensus 389 I~~~~~i~~SyP~F~~~l~~LGa~I~~~~~ 418 (419)
T d1ejda_ 389 VDRIYHIDRGYERIEDKLRALGANIERVKG 418 (419)
T ss_dssp ECCTHHHHHHSSSHHHHHHTTTCEEEEEEC
T ss_pred ECCCEEEECCCHHHHHHHHHCCCEEEEECC
T ss_conf 836137868734099999967989999717
No 2
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=645.31 Aligned_cols=406 Identities=20% Similarity=0.257 Sum_probs=353.4
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|++++|+|+++|+|+|++|||||++||+|++|+|++|+|+|+|+|+++|+.+|+++|++||++|+++.+...+...+.+
T Consensus 1 M~~l~i~p~~~l~G~i~~pgsKs~s~R~l~~aaLa~g~s~i~n~~~~~Dv~~~~~~L~~LG~~i~~~~~~~~i~i~g~g- 79 (427)
T d1g6sa_ 1 MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNG- 79 (427)
T ss_dssp CCEEEECCCCEEEEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSCCEEEECCS-
T ss_pred CCCEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEECC-
T ss_conf 9828976898057999827848999999999997599899925992399999999999869979993795099999579-
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEE
Q ss_conf 999436665864440234311321102253323332104530586633320121234333210332245--686148999
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARV 158 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i 158 (430)
............++++++++||+.++++ .+.+.+.++|||+|++|||++|+++|++|||+|++ +++++|+.+
T Consensus 80 -----~~~~~~~~~~i~~g~sgt~~r~l~~l~~-~~~~~v~l~G~~sL~~Rp~~~~~~~L~~lGa~i~~~~~~~~~p~~i 153 (427)
T d1g6sa_ 80 -----GPLHAEGALELFLGNAGTAMRPLAAALC-LGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRL 153 (427)
T ss_dssp -----SCCCCCTTEEEECTTCHHHHHHHHHHTT-SSEEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSSTTSSCEEE
T ss_pred -----CCCCCCCCCEEECCCCCHHEEEEEEEEC-CCCEEEECCCCCHHCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEE
T ss_conf -----8656666410000122011023223311-3432784366401102014568889984498899740565415996
Q ss_pred ECCCCCCCCCCCCC-CCCCCEEEEEEECCCCCCCCCCC---CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC-C
Q ss_conf 50244333333343-46661135665044446873323---3222015998998750145443202443212025542-2
Q gi|254780927|r 159 SSKGLRGTSYTFPK-VSVGATQVMMMVASLSHGDTSIY---NAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTS-L 233 (430)
Q Consensus 159 ~g~~l~g~~i~l~~-~S~q~~s~lLlaA~~a~G~t~I~---~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~-l 233 (430)
.| ++++..+.+|. .|+|++|++||+|++++|.++|+ +++++||+++|++||++||++++..+++.+.+.|++. +
T Consensus 154 ~g-~~~~~~i~~~~~~Ssq~~s~lllaA~~~~~~~~i~~~~~~~S~p~v~~t~~~l~~~G~~i~~~~~~~~~~~~~~~~~ 232 (427)
T d1g6sa_ 154 QG-GFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQ 232 (427)
T ss_dssp EE-CCCCEEEEEEESSCTHHHHHHHHHGGGSSSCEEEEEEEEECSTHHHHHHHHHHHHTTCCCEEETTTEEEECSSCCCB
T ss_pred CC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68-87660399888557078878999877626874899556555572132000111034543101234422235861135
Q ss_pred CCCCCEECCCCHHCCHHHHHCCCCCCCEEEECCCCCCCC---CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCC
Q ss_conf 223420014310000100000124442010023456421---04688975267436744512675326764315762153
Q gi|254780927|r 234 SGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLK---TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAP 310 (430)
Q Consensus 234 ~~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~---~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~ 310 (430)
.+.+|+||+|||+|+||++|+++++|+++++|++.++.+ .++++|++||+++++.++.+.+.. ..+.+++++..+
T Consensus 233 ~~~~~~v~~D~s~Aa~~~~aa~l~~g~i~i~~~~~~~~~~d~~~~~~l~~~G~~i~~~~~~~~~~~--~~l~~~~~d~~~ 310 (427)
T d1g6sa_ 233 SPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTR--GELNAIDMDMNH 310 (427)
T ss_dssp CCSEEECCBCHHHHHHHHHHHHHHEEEEEEESCCTTCCCGGGGHHHHHHHHTCEEEECSSEEEEEC--CCCBCCEEECTT
T ss_pred CCCEEECCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC--CCCCCEECCCCC
T ss_conf 883684451031356799988850571430540013231014555555523550798404332221--222202003522
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEEE----ECCH-HHH-HHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEE-CCHH
Q ss_conf 566642101346676313566416732----0465-675-66788974885899978969998889851015660-8189
Q gi|254780927|r 311 FPGFPTDLQAQFMAMMCCAAGISHITE----TIFE-NRF-MHVQELVRLGARISLSGQTARVEGVQGLRGAPVMA-TDLR 383 (430)
Q Consensus 311 ~pg~~~D~~p~la~laa~A~G~s~I~e----~i~e-~R~-~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~-~DHR 383 (430)
+| |++|++++++++++|.++++. +.+| +|+ .+++||+|||+++++++|+++|+|+++++|++|++ +|||
T Consensus 311 ~p----d~~p~l~~la~~a~g~s~~~g~~~lr~KEsdRi~~~~~~L~klG~~i~~~~d~l~I~G~~~l~~~~v~s~~DHR 386 (427)
T d1g6sa_ 311 IP----DAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHR 386 (427)
T ss_dssp ST----TTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECCSSCCCCEECCTTCHH
T ss_pred CC----CCCHHHHHHHHHHCCCCCEECCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEEECCCCHH
T ss_conf 68----74226999976543763111044345088437999999999779989996998999699878526676898789
Q ss_pred HHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 99999999985498199924330117784878899866
Q gi|254780927|r 384 ASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRC 421 (430)
Q Consensus 384 iaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~L 421 (430)
+||||++|||.++|. +|+|++||+||||+||++|++|
T Consensus 387 iama~~iaal~~~g~-~I~~~~~i~ksyP~F~~~l~~l 423 (427)
T d1g6sa_ 387 MAMCFSLVALSDTPV-TILDPKCTAKTFPDYFEQLARI 423 (427)
T ss_dssp HHHHHHGGGSSSSCE-EEESGGGGGGTCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCE-EEECCCCCCCCCHHHHHHHHHH
T ss_conf 999999999758986-9969870226397899999998
No 3
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=100.00 E-value=0 Score=641.92 Aligned_cols=405 Identities=22% Similarity=0.296 Sum_probs=351.4
Q ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEE
Q ss_conf 38982797313789769646689999999974699699986983699999999999749899992774114202452599
Q gi|254780927|r 3 RIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMH 82 (430)
Q Consensus 3 ~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~ 82 (430)
|++++ +++|+|+|++|||||++||+|++|+|++|+|+|+|+|+|+|+.+|+++||+||++|+++++...+......
T Consensus 2 ~~~~~-~~~l~G~i~~pgSKS~s~R~L~laaLa~g~s~i~n~~~s~Dv~~~~~~L~~lG~~i~~~~~~~~I~g~g~~--- 77 (427)
T d1rf6a_ 2 KLKTN-IRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMA--- 77 (427)
T ss_dssp EECCC-CCCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEECCCSS---
T ss_pred EECCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCC---
T ss_conf 60368-87717999837868999999999997699899937990499999999999788989975999999916887---
Q ss_pred EECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEEEC
Q ss_conf 9436665864440234311321102253323332104530586633320121234333210332245--68614899950
Q gi|254780927|r 83 FRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVSS 160 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i~g 160 (430)
..........++++++++||+.+++++. ...+.++|||+|++|||++|+++|++|||++++ +++++|+.+.+
T Consensus 78 -----~~~~~~~~i~~~~sgt~~r~l~~l~a~~-~~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g 151 (427)
T d1rf6a_ 78 -----GLKAPQNALNMGNSGTSIRLISGVLAGA-DFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKG 151 (427)
T ss_dssp -----CCCCCSSCEECTTCHHHHHHHHHHGGGC-SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEEC
T ss_pred -----CCCCCHHHHHHCCCCEEECCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCEEEECCC
T ss_conf -----7678615565314430000122222454-3112047981303655542000687639479830355620230247
Q ss_pred C-CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCE
Q ss_conf 2-443333333434666113566504444687332332220159989987501454432024432120255422223420
Q gi|254780927|r 161 K-GLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHR 239 (430)
Q Consensus 161 ~-~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~ 239 (430)
. .+++..+.++.+|+|++|++||||++++|.++|.+ .+||+.+|++||++||++|+..+ ++|+|+|++.|++.+|+
T Consensus 152 ~~~~~~~~i~~~~~S~q~ts~lllaa~~~~g~~~i~~--~~~~~~~t~~~L~~~G~~i~~~~-~~i~i~~~~~l~~~~~~ 228 (427)
T d1rf6a_ 152 TKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIE--KEYTRNHTEDMLQQFGGHLSVDG-KKITVQGPQKLTGQKVV 228 (427)
T ss_dssp CTTCCCCEEECSSCCHHHHHHHHHHHTTSSEEEEEEC--SSCCCCHHHHHHHHTTCCCEEET-TEEEEEECCCCBCCEEE
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEC--CCCCHHHHHHHHHHCCCCCCCCC-EEEEECCCCEECCCEEE
T ss_conf 7887445995357767564435542220589435532--43107789999997399752231-28998863111674698
Q ss_pred ECCCCHHCCHHHHHCCCC-CCCEEEECCCCCCCCC-HHHHHHHCCCCEEEECCCE-----EEEECCCCCCEEEEECCCCC
Q ss_conf 014310000100000124-4420100234564210-4688975267436744512-----67532676431576215356
Q gi|254780927|r 240 ILPDRIEAGTYAMAVAMT-GGDVILKMTDSSLLKT-VFKVMRQTGVDIDIIDEGI-----RVRWNGEKLRPVDVITAPFP 312 (430)
Q Consensus 240 V~~D~ssAa~fl~Aaalt-~g~i~i~n~~~~~~~~-~l~iL~~mGa~i~~~~~~i-----~V~~~~~~l~~~di~~~~~p 312 (430)
||+|||+|+||++||+++ +++++++|++.++.+. +++++++||+.+++.+... ........++++++++.++|
T Consensus 229 V~~D~s~A~~~l~aaal~~g~~i~i~~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 308 (427)
T d1rf6a_ 229 VPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIP 308 (427)
T ss_dssp CCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCHHHHHHHHTTCEEEEEEEETTTTEEEEEEECCCCBCCEECTTSGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 58976789999999996799879987789760016788764114530341133232223402331266442223445588
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEEE----ECCH-HHHHHH-HHHHHCCCEEEEECCEEEEECCCCCEEEEEEEC-CHHHH
Q ss_conf 6642101346676313566416732----0465-675667-889748858999789699988898510156608-18999
Q gi|254780927|r 313 GFPTDLQAQFMAMMCCAAGISHITE----TIFE-NRFMHV-QELVRLGARISLSGQTARVEGVQGLRGAPVMAT-DLRAS 385 (430)
Q Consensus 313 g~~~D~~p~la~laa~A~G~s~I~e----~i~e-~R~~~~-~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~-DHRia 385 (430)
+++ |.+|++++++|+|+|+|+|++ +++| ||+..+ +||+|||+++++++|+++|+|+++++|++|+++ |||+|
T Consensus 309 ~~~-d~~p~la~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~eL~klG~~~~~~~d~l~I~G~~~l~g~~v~s~~DHRia 387 (427)
T d1rf6a_ 309 RLI-DELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIG 387 (427)
T ss_dssp GTG-GGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECCCCCCEEEECTTCHHHH
T ss_pred CCH-HHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEEECCCCHHHH
T ss_conf 723-4555777765315784000207888889989999999999977997999899999979998847877898819999
Q ss_pred HHHHHHHHH-CCCEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 999999985-498199924330117784878899866
Q gi|254780927|r 386 VSLVIAALA-AQGETEISRVYHLDRGFECLEKKLSRC 421 (430)
Q Consensus 386 Ma~~ia~L~-a~g~~~I~~~~~i~ksyp~f~~~L~~L 421 (430)
|||+++||. ++|+++|+|++||+||||+||++|++|
T Consensus 388 ma~~i~al~~~~g~~~I~~~~~v~ksyP~F~~~l~~L 424 (427)
T d1rf6a_ 388 MMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESL 424 (427)
T ss_dssp HHHHHHHHTCSSSCEEEETGGGGGGTCTTHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEECCCCEEECCCHHHHHHHHHH
T ss_conf 9999999965899699827837978765099999997
No 4
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=9.8e-37 Score=255.74 Aligned_cols=209 Identities=18% Similarity=0.182 Sum_probs=164.1
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCC
Q ss_conf 99999999746996999869836999999999997498999927741142024525999436665864440234311321
Q gi|254780927|r 25 SLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRAS 104 (430)
Q Consensus 25 s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s 104 (430)
|||+|++|+||+|+|+|+|++.++|+.+|+++|++||++|+++++................. ........+++
T Consensus 1 S~Rali~AaLa~g~t~I~n~~~~~Dv~~~i~~L~~lG~~I~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 73 (216)
T d1p88a_ 1 SNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEG-------ALELFLGNAGT 73 (216)
T ss_dssp CTHHHHHHHSEESEEEEESCCCSHHHHHHHHHHHHHTCEEEECSSSCCEEEECCSSSCCCSS-------CEEEECSSCHH
T ss_pred CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCC-------CEEECCCCCCC
T ss_conf 97999999976998899689975899999999998499799837630357502333443223-------20101233220
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEEECCCCCCCCCCCCC-CCCCCEEEE
Q ss_conf 102253323332104530586633320121234333210332245--68614899950244333333343-466611356
Q gi|254780927|r 105 FWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVSSKGLRGTSYTFPK-VSVGATQVM 181 (430)
Q Consensus 105 ~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i~g~~l~g~~i~l~~-~S~q~~s~l 181 (430)
.+++.++++......+..+|+++++.||+++++++|+++|++++. +++.+|+.+.++ +.++.+.++. .|+|++|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~G~~i~~~~~~~~~p~~~~g~-~~~~~i~i~~~~Ssq~~s~l 152 (216)
T d1p88a_ 74 AMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGG-FTGGNVDVDGSVSSQFLTAL 152 (216)
T ss_dssp HHHHHHHHTTSSCCCEEEECCGGGGGSCCHHHHHHHHHTTCCEECSSSTTSSCCEECCC-CCCCCEEEESSSCHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEECCC-CCCCEEEECCCCCHHHHHHH
T ss_conf 11101101124563244303533233210133444541685899636753135775588-76852998478871888689
Q ss_pred EEECCCCCCCCCCC---CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC-CCCCEEC
Q ss_conf 65044446873323---322201599899875014544320244321202554222-2342001
Q gi|254780927|r 182 MMVASLSHGDTSIY---NAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLS-GTRHRIL 241 (430)
Q Consensus 182 LlaA~~a~G~t~I~---~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~-~~~~~V~ 241 (430)
||+|+++++.|+|. +..++||+++|++||++||++|+..++++|+|+|+|+|+ |+||+||
T Consensus 153 llaa~~~~~~t~I~~~~~~~s~~~v~~t~~~L~~~Ga~I~~~~~~~i~I~G~~~~~~p~dy~vE 216 (216)
T d1p88a_ 153 LMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 216 (216)
T ss_dssp HHHSTTSSSCEEEEEESSCSCHHHHHHHHHHHHTTTCCEEECSSSCEEECSSCCEECCSEEECC
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCEEEEC
T ss_conf 9999755896489953545787639999999998899699668988999099744579328969
No 5
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]}
Probab=99.79 E-value=7.8e-18 Score=132.68 Aligned_cols=284 Identities=16% Similarity=0.152 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEE---ECCCCCCCCCCCCC--CCCHHH
Q ss_conf 3201212343332103322456861489995024433333334346661135665---04444687332332--220159
Q gi|254780927|r 129 GTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQVMMM---VASLSHGDTSIYNA--AREPEV 203 (430)
Q Consensus 129 ~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s~lLl---aA~~a~G~t~I~~~--~~~P~i 203 (430)
..+-....+++|++|||+|+.+ +. +.|.++++.+.....+..-....+.+++ +|.+.++.+++.+- ..++.+
T Consensus 46 ~s~D~~~~~~al~~LG~~I~~~-~~--~~I~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~~~~l~Gd~sL~~RPm 122 (419)
T d1ejda_ 46 KLKDIDTTMKLLTQLGTKVERD-GS--VWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPV 122 (419)
T ss_dssp CCHHHHHHHHHHHHTTCEEEES-SS--EEEECTTCCCCEECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTT
T ss_pred CCHHHHHHHHHHHHCCCEEEEC-CE--EEEECCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 0199999999999779989989-87--99989997777665545403543200244256652775246666434577742
Q ss_pred HHHHHHHHCCCCCCCCCCC-CCEEECCCCCCCCCCCEECCCCHHCCH---HHHHCCCCCCCEEEECCCCCCC-CCHHHHH
Q ss_conf 9899875014544320244-321202554222234200143100001---0000012444201002345642-1046889
Q gi|254780927|r 204 VDLAHCLNSMGAKISGMGS-STITIQGVTSLSGTRHRILPDRIEAGT---YAMAVAMTGGDVILKMTDSSLL-KTVFKVM 278 (430)
Q Consensus 204 ~~t~~~L~~~Gv~I~~~~~-~~i~I~g~~~l~~~~~~V~~D~ssAa~---fl~Aaalt~g~i~i~n~~~~~~-~~~l~iL 278 (430)
..+++.|++||++|+..+. -.+.++| ++++.+|.. |.+|+.+ ++.|+.+..+...+.+....+. ...+++|
T Consensus 123 ~~li~~L~~lGa~i~~~~g~~~~~i~g--~l~g~~~~~--~~~Ssq~~s~llla~~~~~g~~~i~~~~~~~~i~~t~~~l 198 (419)
T d1ejda_ 123 DLHIFGLEKLGAEIKLEEGYVKASVNG--RLKGAHIVM--DKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFL 198 (419)
T ss_dssp HHHHHHHHHTTCEEEEETTEEEEECSS--SCBCCEEEC--SSCCHHHHHHHHHHHTTSBSEEEEETCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEECCCCEEEECCC--CCCCCEEEC--CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 678899985361699628924453378--866746745--8762567788984455237963542024441566677776
Q ss_pred HHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCHHHHH-HHHHHHHCCC
Q ss_conf 7526743674451267532676431576215356664210--134667631356641673204656756-6788974885
Q gi|254780927|r 279 RQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFENRFM-HVQELVRLGA 355 (430)
Q Consensus 279 ~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e~R~~-~~~eL~klG~ 355 (430)
++||+++++.++...+......+.+.+..-- .|+ ..+++++|+...+.-++. ....+.++ ..+-|.+||+
T Consensus 199 ~~~G~~i~~~~~~~~~i~g~~~~~~~~~~V~------~D~ssAa~~~~aa~i~g~~i~i~-~~~~~~~~~~~~~l~~mg~ 271 (419)
T d1ejda_ 199 VALGAKISGQGTDRITIEGVERLGGGVYRVL------PDRIETGTFLVAAAISGGKIVCR-NAQPDTLDAVLAKLREAGA 271 (419)
T ss_dssp HHTTCEEECTTSSEEEEECCSCBCCEEEECC------BCHHHHHHHHHHHHTTTCEEEEE-SCCGGGCHHHHHHHHHTTC
T ss_pred HHCCEEEECCCCEEEEECCCCCCCCCCEEEC------CHHHHHHHHHHHHCCCCCEEECC-CCCHHHHHHHHHHHHHHCC
T ss_conf 5220100117954999805423467740535------70664311333221568655216-7780677889887664231
Q ss_pred EEEEECCEEEEECCC-CCEEEEEEE-CCH----HHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHCCCEEEEE
Q ss_conf 899978969998889-851015660-818----9999999999854981999243301177848788998669789995
Q gi|254780927|r 356 RISLSGQTARVEGVQ-GLRGAPVMA-TDL----RASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRCGALIQRI 428 (430)
Q Consensus 356 ~v~~~~d~l~I~G~~-~l~g~~v~~-~DH----RiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~LGa~Ie~i 428 (430)
+++..++.+.|.... .+.+-++.. .|- -...+|+.++..+.|...+++.++= .--.+.+.|+++|++++.-
T Consensus 272 ~i~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ke~d--r~~~~~~eL~klG~~v~~~ 348 (419)
T d1ejda_ 272 DIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFE--NRFMHVPELIRMGAHAEIE 348 (419)
T ss_dssp EEEECSSEEEEECTTCCCBCCCEECCSTTSCCGGGHHHHHHHHHTSBSEEEEECCSCS--SCCTHHHHHHHTTCEEEEE
T ss_pred EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCEEEEEECCC--HHHHHHHHHHHCCCEEEEE
T ss_conf 3997377699997676544300256632234421145541222187361677640234--3878999999688979996
No 6
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.79 E-value=5e-18 Score=133.91 Aligned_cols=287 Identities=17% Similarity=0.218 Sum_probs=170.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC---CCCCCCCCCCCCEEEEEEECC--CCCCCCCCCCC--CCC
Q ss_conf 33201212343332103322456861489995024433---333334346661135665044--44687332332--220
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRG---TSYTFPKVSVGATQVMMMVAS--LSHGDTSIYNA--ARE 200 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g---~~i~l~~~S~q~~s~lLlaA~--~a~G~t~I~~~--~~~ 200 (430)
+..+-+...+++|++||++|+.+++.+ +|.+.+..+ -...++.-.++ +...++.+. ..++.+.+.+- ..+
T Consensus 43 ~~s~Dv~~~~~~L~~lG~~i~~~~~~~--~I~g~g~~~~~~~~~~i~~~~sg-t~~r~l~~l~a~~~~~v~~~G~~~l~~ 119 (427)
T d1rf6a_ 43 LRGEDVLSTMQVFRDLGVEIEDKDGVI--TVQGVGMAGLKAPQNALNMGNSG-TSIRLISGVLAGADFEVEMFGDDSLSK 119 (427)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEETTEE--EEECCCSSCCCCCSSCEECTTCH-HHHHHHHHHGGGCSSEEEEECCTTGGG
T ss_pred CCCHHHHHHHHHHHHCCCEEEECCCEE--EEEECCCCCCCCCHHHHHHCCCC-EEECCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 904999999999997889899759999--99916887767861556531443-000012222245431120479813036
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC---CCEEECCCCCCCCCCCEECCCCHHCC--H-HHHHCCCCCCCEEEECCCCCCCCCH
Q ss_conf 1599899875014544320244---32120255422223420014310000--1-0000012444201002345642104
Q gi|254780927|r 201 PEVVDLAHCLNSMGAKISGMGS---STITIQGVTSLSGTRHRILPDRIEAG--T-YAMAVAMTGGDVILKMTDSSLLKTV 274 (430)
Q Consensus 201 P~i~~t~~~L~~~Gv~I~~~~~---~~i~I~g~~~l~~~~~~V~~D~ssAa--~-fl~Aaalt~g~i~i~n~~~~~~~~~ 274 (430)
+.+..+++.|+++|++|+..+. -.+.+.|...+++.++. .|.+|+- + .+.|+.+..|...+.+-.+ ..+..
T Consensus 120 RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g~~~~~~~~i~--~~~~S~q~ts~lllaa~~~~g~~~i~~~~~-~~~~t 196 (427)
T d1rf6a_ 120 RPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYE--LPIASAQVKSALMFAALQAKGESVIIEKEY-TRNHT 196 (427)
T ss_dssp SCCHHHHHHHHHTTCEEEEETTTTEEEEEEECCTTCCCCEEE--CSSCCHHHHHHHHHHHTTSSEEEEEECSSC-CCCHH
T ss_pred CCCCCCCHHHHHCCCEEEECCCCCCEEEECCCCCCCCCEEEE--CCCCCHHHHHHHHHHHHCCCCCEEEECCCC-CHHHH
T ss_conf 555420006876394798303556202302477887445995--357767564435542220589435532431-07789
Q ss_pred HHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCC-CEEEEEE-CCHHHHHHHHHH
Q ss_conf 68897526743674451267532676431576215356664210--1346676313566-4167320-465675667889
Q gi|254780927|r 275 FKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAG-ISHITET-IFENRFMHVQEL 350 (430)
Q Consensus 275 l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G-~s~I~e~-i~e~R~~~~~eL 350 (430)
++.|++||++++..++.++|.+. ..+.+.++.- +.|+ ..+++++++.+.| +-+|++. ..+.+...++-|
T Consensus 197 ~~~L~~~G~~i~~~~~~i~i~~~-~~l~~~~~~V------~~D~s~A~~~l~aaal~~g~~i~i~~~~~~~~~~~~~~~l 269 (427)
T d1rf6a_ 197 EDMLQQFGGHLSVDGKKITVQGP-QKLTGQKVVV------PGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVI 269 (427)
T ss_dssp HHHHHHTTCCCEEETTEEEEEEC-CCCBCCEEEC------CBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCHHHHHH
T ss_pred HHHHHHCCCCCCCCCEEEEECCC-CEECCCEEEC------CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 99999739975223128998863-1116746985------8976789999999996799879987789760016788764
Q ss_pred HHCCCEEEEECCE------EEEECCCCCEEEEEEECCHH----HHHHHHHHHHHCCCEEEEECCCEECCCCCCH----HH
Q ss_conf 7488589997896------99988898510156608189----9999999998549819992433011778487----88
Q gi|254780927|r 351 VRLGARISLSGQT------ARVEGVQGLRGAPVMATDLR----ASVSLVIAALAAQGETEISRVYHLDRGFECL----EK 416 (430)
Q Consensus 351 ~klG~~v~~~~d~------l~I~G~~~l~g~~v~~~DHR----iaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f----~~ 416 (430)
.+||+.++..+.. ..+.....+++.+++..+.. ..+.++++++.++|+++|.|+++++.-+.|- .+
T Consensus 270 ~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~d~~p~la~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~ 349 (427)
T d1rf6a_ 270 RAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVAD 349 (427)
T ss_dssp HHTTCEEEEEEEETTTTEEEEEEECCCCBCCEECTTSGGGTGGGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHH
T ss_pred HCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHH
T ss_conf 11453034113323222340233126644222344558872345557777653157840002078888899899999999
Q ss_pred HHHHCCCEEEE
Q ss_conf 99866978999
Q gi|254780927|r 417 KLSRCGALIQR 427 (430)
Q Consensus 417 ~L~~LGa~Ie~ 427 (430)
.|+++|++++.
T Consensus 350 eL~klG~~~~~ 360 (427)
T d1rf6a_ 350 ALNSMGADITP 360 (427)
T ss_dssp HHHTTTCCEEE
T ss_pred HHHHCCCEEEE
T ss_conf 99977997999
No 7
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=99.76 E-value=4.2e-17 Score=127.90 Aligned_cols=287 Identities=18% Similarity=0.269 Sum_probs=184.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC---CCCCCCCCCCCCCEEEEEEECCCCCC--CCCCCC--CCCC
Q ss_conf 3320121234333210332245686148999502443---33333343466611356650444468--733233--2220
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLR---GTSYTFPKVSVGATQVMMMVASLSHG--DTSIYN--AARE 200 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~---g~~i~l~~~S~q~~s~lLlaA~~a~G--~t~I~~--~~~~ 200 (430)
+..+-+...+++|++||++|+.+++...+++.+.+.. .....++...++ +...++.+..+.+ .+.+.+ ...+
T Consensus 45 ~~~~Dv~~~~~~L~~LG~~i~~~~~~~~i~i~g~g~~~~~~~~~~i~~g~sg-t~~r~l~~l~~~~~~~v~l~G~~sL~~ 123 (427)
T d1g6sa_ 45 LDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAG-TAMRPLAAALCLGSNDIVLTGEPRMKE 123 (427)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEECTTSCCEEEECCSSCCCCCTTEEEECTTCH-HHHHHHHHHTTSSEEEEEEECCGGGGG
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCCCCEEECCCCC-HHEEEEEEEECCCCEEEECCCCCHHCC
T ss_conf 9239999999999986997999379509999957986566664100001220-110232233113432784366401102
Q ss_pred HHHHHHHHHHHCCCCCCCCCC-CC--CEEECCCCCCCCCCCEECCCCHHCCH--HHHHCCCCCCCEEEE---CCC-CCCC
Q ss_conf 159989987501454432024-43--21202554222234200143100001--000001244420100---234-5642
Q gi|254780927|r 201 PEVVDLAHCLNSMGAKISGMG-SS--TITIQGVTSLSGTRHRILPDRIEAGT--YAMAVAMTGGDVILK---MTD-SSLL 271 (430)
Q Consensus 201 P~i~~t~~~L~~~Gv~I~~~~-~~--~i~I~g~~~l~~~~~~V~~D~ssAa~--fl~Aaalt~g~i~i~---n~~-~~~~ 271 (430)
+.+...++.|+++|++|+..+ .. -+.++| .+.+.++.++.+.||... .+.||++..+..+|+ |.. ....
T Consensus 124 Rp~~~~~~~L~~lGa~i~~~~~~~~~p~~i~g--~~~~~~i~~~~~~Ssq~~s~lllaA~~~~~~~~i~~~~~~~S~p~v 201 (427)
T d1g6sa_ 124 RPIGHLVDALRLGGAKITYLEQENYPPLRLQG--GFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYI 201 (427)
T ss_dssp SCCHHHHHHHHHTTCCEEESSSTTSSCEEEEE--CCCCEEEEEEESSCTHHHHHHHHHGGGSSSCEEEEEEEEECSTHHH
T ss_pred CHHHHHHHHHHHCCCEEEEEECCCCEEEEECC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH
T ss_conf 01456888998449889974056541599668--8766039988855707887899987762687489955655557213
Q ss_pred CCHHHHHHHCCCCEEEECCCEEEEECC-CCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCH----HHH
Q ss_conf 104688975267436744512675326-76431576215356664210--13466763135664167320465----675
Q gi|254780927|r 272 KTVFKVMRQTGVDIDIIDEGIRVRWNG-EKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFE----NRF 344 (430)
Q Consensus 272 ~~~l~iL~~mGa~i~~~~~~i~V~~~~-~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e----~R~ 344 (430)
...++.|++||++++..+....+.... ....+.+..-. .|+ ..+++++++...|..++++ +.. .+.
T Consensus 202 ~~t~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~v~------~D~s~Aa~~~~aa~l~~g~i~i~~-~~~~~~~~d~ 274 (427)
T d1g6sa_ 202 DITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE------GDASSASYFLAAAAIKGGTVKVTG-IGRNSMQGDI 274 (427)
T ss_dssp HHHHHHHHHTTCCCEEETTTEEEECSSCCCBCCSEEECC------BCHHHHHHHHHHHHHHEEEEEEES-CCTTCCCGGG
T ss_pred HHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC------CHHHHHHHHHHHHHHHCCCEEECC-CCCCCCCCHH
T ss_conf 200011103454310123442223586113588368445------103135679998885057143054-0013231014
Q ss_pred HHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEE---CCHHHHHHHHHHHHHCCCEEEEECCCEEC-CCCC---CHHHH
Q ss_conf 66788974885899978969998889851015660---81899999999998549819992433011-7784---87889
Q gi|254780927|r 345 MHVQELVRLGARISLSGQTARVEGVQGLRGAPVMA---TDLRASVSLVIAALAAQGETEISRVYHLD-RGFE---CLEKK 417 (430)
Q Consensus 345 ~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~---~DHRiaMa~~ia~L~a~g~~~I~~~~~i~-ksyp---~f~~~ 417 (430)
..++.|++||++++..++.+.+.+ ..+++-.++. +|- ++.++++++.++|.+++.|+++++ |=+. .+.+.
T Consensus 275 ~~~~~l~~~G~~i~~~~~~~~~~~-~~l~~~~~d~~~~pd~--~p~l~~la~~a~g~s~~~g~~~lr~KEsdRi~~~~~~ 351 (427)
T d1g6sa_ 275 RFADVLEKMGATICWGDDYISCTR-GELNAIDMDMNHIPDA--AMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATE 351 (427)
T ss_dssp GHHHHHHHHTCEEEECSSEEEEEC-CCCBCCEEECTTSTTT--HHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCC-CCCCCEECCCCCCCCC--CHHHHHHHHHHCCCCCEECCCCCCEEEEHHHHHHHHH
T ss_conf 555555523550798404332221-2222020035226874--2269999765437631110443450884379999999
Q ss_pred HHHCCCEEEE
Q ss_conf 9866978999
Q gi|254780927|r 418 LSRCGALIQR 427 (430)
Q Consensus 418 L~~LGa~Ie~ 427 (430)
|+++|++++.
T Consensus 352 L~klG~~i~~ 361 (427)
T d1g6sa_ 352 LRKVGAEVEE 361 (427)
T ss_dssp HHHTTCEEEE
T ss_pred HHHCCCEEEE
T ss_conf 9977998999
No 8
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=99.55 E-value=1.7e-14 Score=111.00 Aligned_cols=189 Identities=19% Similarity=0.200 Sum_probs=118.0
Q ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-EEECCCCCCCCCCCEECCCCHHCCH--HHHHCCCC
Q ss_conf 66504444687332332220159989987501454432024432-1202554222234200143100001--00000124
Q gi|254780927|r 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSST-ITIQGVTSLSGTRHRILPDRIEAGT--YAMAVAMT 257 (430)
Q Consensus 181 lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~-i~I~g~~~l~~~~~~V~~D~ssAa~--fl~Aaalt 257 (430)
.||+|.+++|+|+|+|+..++++..|+++|++||++|++.+++. +.+.+.............+..+.++ ++.++.+.
T Consensus 4 ali~AaLa~g~t~I~n~~~~~Dv~~~i~~L~~lG~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (216)
T d1p88a_ 4 ALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALC 83 (216)
T ss_dssp HHHHHHSEESEEEEESCCCSHHHHHHHHHHHHHTCEEEECSSSCCEEEECCSSSCCCSSCEEEECSSCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCEECCCC
T ss_conf 99999976998899689975899999999998499799837630357502333443223201012332201110110112
Q ss_pred --CCCEEEECCCCC---CCCCHHHHHHHCCCCEEEECCCE--EEEEC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf --442010023456---42104688975267436744512--67532-67643157621535666421013466763135
Q gi|254780927|r 258 --GGDVILKMTDSS---LLKTVFKVMRQTGVDIDIIDEGI--RVRWN-GEKLRPVDVITAPFPGFPTDLQAQFMAMMCCA 329 (430)
Q Consensus 258 --~g~i~i~n~~~~---~~~~~l~iL~~mGa~i~~~~~~i--~V~~~-~~~l~~~di~~~~~pg~~~D~~p~la~laa~A 329 (430)
...+.+.+-..- +....++.|++||++++..++.. -+... ......++++....+ .....++.+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~r~~~~~~~~l~~~G~~i~~~~~~~~~p~~~~g~~~~~~i~i~~~~Ss----q~~s~lllaa~~~ 159 (216)
T d1p88a_ 84 LGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS----QFLTALLMTAPLA 159 (216)
T ss_dssp SSCCCEEEECCGGGGGSCCHHHHHHHHHTTCCEECSSSTTSSCCEECCCCCCCCEEEESSSCH----HHHHHHHHHSTTS
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCH----HHHHHHHHHHHHC
T ss_conf 456324430353323321013344454168589963675313577558876852998478871----8886899999755
Q ss_pred CCCEEEEE--ECCHH--HHHHHHHHHHCCCEEEEEC-CEEEEECCCCCE
Q ss_conf 66416732--04656--7566788974885899978-969998889851
Q gi|254780927|r 330 AGISHITE--TIFEN--RFMHVQELVRLGARISLSG-QTARVEGVQGLR 373 (430)
Q Consensus 330 ~G~s~I~e--~i~e~--R~~~~~eL~klG~~v~~~~-d~l~I~G~~~l~ 373 (430)
+|.+.|+. .+.+. |-....-|++||++|+.++ +.+.|.|+++++
T Consensus 160 ~~~t~I~~~~~~~s~~~v~~t~~~L~~~Ga~I~~~~~~~i~I~G~~~~~ 208 (216)
T d1p88a_ 160 PEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQ 208 (216)
T ss_dssp SSCEEEEEESSCSCHHHHHHHHHHHHTTTCCEEECSSSCEEECSSCCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEECCCCCCC
T ss_conf 8964899535457876399999999988996996689889990997445
No 9
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]}
Probab=94.65 E-value=0.0076 Score=35.07 Aligned_cols=12 Identities=8% Similarity=0.290 Sum_probs=5.4
Q ss_pred HHHHHHHCCCCE
Q ss_conf 468897526743
Q gi|254780927|r 274 VFKVMRQTGVDI 285 (430)
Q Consensus 274 ~l~iL~~mGa~i 285 (430)
++-+|++||+++
T Consensus 136 ~lp~l~~~G~~~ 147 (239)
T d1qmha2 136 LEPLLAKIGIHQ 147 (239)
T ss_dssp HHHHHHHTTCEE
T ss_pred HHHHHHHCCCCE
T ss_conf 999999769973
No 10
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]}
Probab=93.01 E-value=0.25 Score=25.18 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=35.6
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCE----EEEEEECCCCCCCCCCC-----CCCCCHHHH----HHHHHHHCCCCCCC
Q ss_conf 614899950244333333343466611----35665044446873323-----322201599----89987501454432
Q gi|254780927|r 152 GYVDARVSSKGLRGTSYTFPKVSVGAT----QVMMMVASLSHGDTSIY-----NAAREPEVV----DLAHCLNSMGAKIS 218 (430)
Q Consensus 152 g~~p~~i~g~~l~g~~i~l~~~S~q~~----s~lLlaA~~a~G~t~I~-----~~~~~P~i~----~t~~~L~~~Gv~I~ 218 (430)
|.--+...++.+++++|+.+..+++.+ ..+|.+++++++.++|. |....|-++ -++-+|++||++++
T Consensus 69 gst~l~f~Pg~i~~g~~~~~~~tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lp~l~~~G~~~~ 148 (239)
T d1qmha2 69 GSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQ 148 (239)
T ss_dssp TCCCEEEECCCCCCEEEEEEEEEEEEHHHHHHHHHHHHTTSSSCEEEEEEEECBBTTBCCTHHHHHTHHHHHHHTTCEEE
T ss_pred CCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 84799988984238758995689830167999999999638997699998234899898888999999999997699738
No 11
>d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.54 E-value=13 Score=14.09 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCHHCC
Q ss_conf 220159989987501454432024432120255422223420014310000
Q gi|254780927|r 198 AREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEAG 248 (430)
Q Consensus 198 ~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~ssAa 248 (430)
..+|||...++.+++.|++.+ +.|..-+||+||.+..
T Consensus 21 svs~yVa~~i~~i~~sGl~y~--------------~~pmgT~IEG~~del~ 57 (104)
T d1lxja_ 21 SISDFVALIEKKIRESPLKST--------------LHSAGTTIEGPWDDVM 57 (104)
T ss_dssp CCHHHHHHHHHHHHTSSSEEE--------------EETTEEEEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCEE--------------ECCCCCEEECCHHHHH
T ss_conf 689999999999997599758--------------6588536777899999
No 12
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=27.33 E-value=14 Score=13.76 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=7.5
Q ss_pred HHHHHHHCCCCEEEECCCEEE
Q ss_conf 468897526743674451267
Q gi|254780927|r 274 VFKVMRQTGVDIDIIDEGIRV 294 (430)
Q Consensus 274 ~l~iL~~mGa~i~~~~~~i~V 294 (430)
+.++|++||++++..++.+.|
T Consensus 25 i~~~L~~Lg~~~~~~~~~~~V 45 (75)
T d1jjcb2 25 QIAILKRLGCRVEGEGPTYRV 45 (75)
T ss_dssp HHHHHHHTTCEEECSSSSEEE
T ss_pred HHHHHHHCCCCEEECCCCEEE
T ss_conf 999999809722865882799
No 13
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.78 E-value=17 Score=13.21 Aligned_cols=20 Identities=5% Similarity=-0.027 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHCCCCC
Q ss_conf 22201599899875014544
Q gi|254780927|r 197 AAREPEVVDLAHCLNSMGAK 216 (430)
Q Consensus 197 ~~~~P~i~~t~~~L~~~Gv~ 216 (430)
.+..++.....+.|++.|.+
T Consensus 122 v~~~~~~~~~a~~l~~lg~~ 141 (273)
T d1o17a2 122 VFSKDHLDLLSKSAYELDFN 141 (273)
T ss_dssp CSSHHHHHHHHHHHTTSCCS
T ss_pred CCCHHHHHHHHHHHHHHCCC
T ss_conf 34588999999999864366
Done!