RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] (430 letters) >gnl|CDD|181804 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated. Length = 417 Score = 674 bits (1742), Expect = 0.0 Identities = 226/428 (52%), Positives = 300/428 (70%), Gaps = 11/428 (2%) Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60 MD++ I GG L+G + ISGAKNA+LP++ ASLL E +TL N+PDL+DV+ +I +LRS Sbjct: 1 MDKLVIEGGKPLSGEVTISGAKNAALPILAASLLAEEPVTLTNVPDLSDVRTMIELLRSL 60 Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120 G ++ ++ T+ +I + Y+LV KMRAS V+GPLLAR G A++ Sbjct: 61 GAKV----EFDGNG-----TVTIDASNINNTEAPYELVKKMRASILVLGPLLARFGEAKV 111 Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180 SLPGGCAIG RPVDL + L++LG I+I+ GYV+A+ L+G SVGAT+ Sbjct: 112 SLPGGCAIGARPVDLHLKGLEALGAEIEIEHGYVEAKAD-GRLKGAHIVLDFPSVGATEN 170 Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 ++M A L+ G T I NAAREPE+VDLA+ LN MGAKISG G+ TITI+GV L G H + Sbjct: 171 ILMAAVLAEGTTVIENAAREPEIVDLANFLNKMGAKISGAGTDTITIEGVERLHGAEHTV 230 Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300 +PDRIEAGT+ +A A+TGGDV ++ L+ V +R+ G +I+ ++GIRV G + Sbjct: 231 IPDRIEAGTFLVAAAITGGDVTIRGARPEHLEAVLAKLREAGAEIEEGEDGIRVDMPG-R 289 Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360 L+ VD+ TAP+PGFPTD+QAQFMA++ A G S ITETIFENRFMHV EL+R+GA I + Sbjct: 290 LKAVDIKTAPYPGFPTDMQAQFMALLTQAEGTSVITETIFENRFMHVPELIRMGADIEVD 349 Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420 G TA V GV+ L GAPVMATDLRAS SLV+A L A+G T + R+YHLDRG+E +E+KL Sbjct: 350 GHTAVVRGVEKLSGAPVMATDLRASASLVLAGLVAEGTTIVDRIYHLDRGYERIEEKLRA 409 Query: 421 CGALIQRI 428 GA I+R+ Sbjct: 410 LGADIERV 417 >gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase. Length = 416 Score = 538 bits (1389), Expect = e-154 Identities = 223/427 (52%), Positives = 291/427 (68%), Gaps = 11/427 (2%) Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60 MD++ + GG L+G + ISGAKNA+LP++ A+LLT E +TL N+PDL+DVK + +LR+ Sbjct: 1 MDKLVVEGGKPLSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNL 60 Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120 G + D N+ + + I Y+LV KMRAS V+GPLLAR G A + Sbjct: 61 GARVERD---NNTLEINTPN-------INSTEAPYELVRKMRASILVLGPLLARFGKAVV 110 Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180 SLPGGCAIG RPVDL + LK+LG I I+ GYV A L G KVSVGAT+ Sbjct: 111 SLPGGCAIGARPVDLHLKGLKALGAEIVIEDGYVYASAK-GRLVGAHIVLDKVSVGATEN 169 Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 ++M A L+ G T I NAAREPE+VDL LN MGAKI+G GS+TITI+GV L GT H + Sbjct: 170 IIMAAVLAEGTTVIENAAREPEIVDLCEFLNKMGAKITGAGSNTITIEGVEKLHGTEHSV 229 Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300 +PDRIEAGT+ +A A+TGG++ +K L+ V +R+ G ++++ + GIRV ++ Sbjct: 230 IPDRIEAGTFLVAAAITGGEITIKNVRPDHLRAVLAKLREIGAEVEVDENGIRVDMRQKR 289 Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360 L+ VD+ T P+PGFPTDLQAQFMA++ A G S ITET+FENRFMHV EL+R+GA I L Sbjct: 290 LKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITETVFENRFMHVDELIRMGANIKLE 349 Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420 G TA + GV+ L GA VMATDLRA +LV+A L A+GET + VYHLDRG+E LE+KL Sbjct: 350 GNTAVIHGVEQLSGAEVMATDLRAGAALVLAGLVAEGETIVHNVYHLDRGYEDLEEKLRA 409 Query: 421 CGALIQR 427 GA I+R Sbjct: 410 LGAKIER 416 >gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed. Length = 417 Score = 426 bits (1097), Expect = e-120 Identities = 167/429 (38%), Positives = 249/429 (58%), Gaps = 13/429 (3%) Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60 M++I I GG L+G + ISGAKN+++ ++ A++L +TL+ +PD++DV L+ IL Sbjct: 1 MEKIVINGGKPLSGEVTISGAKNSAVALIPAAILADGPVTLDGVPDISDVHSLVDILEEL 60 Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120 G ++ K T+ I + V +RAS++ +G LL R A + Sbjct: 61 GGKV----------KRDGDTLEIDPTGIQSMPLPNGKVKSLRASYYFMGALLGRFKKAVV 110 Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180 LPGGC +G RP+D + ++LG + +GG + + + L+G VSVGAT Sbjct: 111 GLPGGCDLGPRPIDQHIKGFEALGAEVTNEGGAI--YLKADELKGAHIYLDVVSVGATIN 168 Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 +M+ A + G T I NAA+EPE++D+A LN+MGA I G G+ I I+GV L G RH + Sbjct: 169 IMLAAVKAKGRTVIENAAKEPEIIDVATLLNNMGANIKGAGTDVIRIEGVDELHGCRHTV 228 Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300 +PDRIEAGTY + A GG V + L++ + + GV +++ ++ I V Sbjct: 229 IPDRIEAGTYMILAAACGGGVTINNVIPEHLESFIAKLEEMGVRVEVNEDSIFVE-KQGN 287 Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360 L+ VD+ T P+PGF TDLQ ++ A G S +T+TI+E RF HV EL R+GA I + Sbjct: 288 LKAVDIKTLPYPGFATDLQQPLTPLLLKANGRSVVTDTIYEKRFKHVDELKRMGANIKVE 347 Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420 G++A + G L GA V ATDLRA +LVIA L A+G TEI+ + H+DRG+ + +KL Sbjct: 348 GRSAIITGPSKLTGAKVKATDLRAGAALVIAGLMAEGVTEITNIEHIDRGYSNIIEKLKA 407 Query: 421 CGALIQRIK 429 GA I R + Sbjct: 408 LGADIWREE 416 >gnl|CDD|162316 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function. Length = 409 Score = 69.2 bits (170), Expect = 2e-12 Identities = 82/411 (19%), Positives = 151/411 (36%), Gaps = 48/411 (11%) Query: 14 GTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQ 73 G I G+K+ + +I + L + N+ D + LR+ G +I D Sbjct: 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKI------EDG 54 Query: 74 NKSYSSTMHFRCR--HIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTR 131 + +DL S + R + G L +G ++ G ++ R Sbjct: 55 GEVAVIEGVGGKEPQAELDLGNS---GTTAR---LLTGVLALADGEVVLT--GDESLRKR 106 Query: 132 PVDLFVDSLKSLGVVI--KIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV---MMMVAS 186 P+ VD+L+ LG I GG + +S G Y S +Q +++ A Sbjct: 107 PMGRLVDALRQLGAEISSLEGGGSLPLTISGPLPGGIVYISGSAS---SQYKSALLLAAP 163 Query: 187 LSHGDTSIYNAAREPEV--VDLA-HCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPD 243 +++ L S G ++ I + G + + D Sbjct: 164 ALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDGRKIVVPGGQKYGPQGYDVPGD 223 Query: 244 RIEAGTYAMAVAMTGGDVILK---MTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300 A + A A+TGG V L+ + + K + V+ + G DI++ ++ + V Sbjct: 224 YSSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEEDDLIVE-GASG 282 Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHIT--------ETIFENRFMHV-QELV 351 L+ + + D + A G++ IT E+ +R + +EL Sbjct: 283 LKGIKIDMDDMI----DELPTLAVLAAFAEGVTRITGAEELRVKES---DRIAAIAEELR 335 Query: 352 RLGARISLSGQTARVEGVQGLRGAPVMA-TDLRASVSLVIAALAAQGETEI 401 +LG + + G + L+GA V D R +++ +A L A+GE I Sbjct: 336 KLGVDVEEFEDGLYIRGKKELKGAVVDTFGDHRIAMAFAVAGLVAEGEVLI 386 Score = 46.1 bits (110), Expect = 2e-05 Identities = 64/298 (21%), Positives = 109/298 (36%), Gaps = 35/298 (11%) Query: 137 VDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIY- 195 +D+L++LG I+ G G + S +++ V +L+ G+ + Sbjct: 41 LDALRALGAKIEDGGEVAVIE-GVGGKEPQAELDLGNSGTTARLLTGVLALADGEVVLTG 99 Query: 196 -NAAREPEVVDLAHCLNSMGAKIS---GMGSSTITIQGVTSLSGTRHRILPDRIEAGTYA 251 + R+ + L L +GA+IS G GS +TI G L G I + Y Sbjct: 100 DESLRKRPMGRLVDALRQLGAEISSLEGGGSLPLTISG--PLPGGIVYISGSA--SSQYK 155 Query: 252 MAVAMTG---GDVILKMTDSSLL------KTVFKVMRQTGVDIDIIDEGIRVRWNGEKLR 302 A+ + V + + L T+ ++ GV+++ D V G+K Sbjct: 156 SALLLAAPALQAVGITIVGEPLKSRPYIEITL-DLLGSFGVEVERSDGRKIVVPGGQKYG 214 Query: 303 PVDVITAPFPGFPTDLQAQFMAMMCCAAG----ISHITE--TIFENRFMHVQELVRLGAR 356 P A F G + ++ T + + V L +GA Sbjct: 215 PQGYDVPGDYS-----SAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIV--LEEMGAD 267 Query: 357 ISLSGQTARVEGVQGLRGAPV-MATDLRASVSLVIAALAAQGETEISRVYHLDRGFEC 413 I + VEG GL+G + M + +L + A A+G T I+ L R E Sbjct: 268 IEVEEDDLIVEGASGLKGIKIDMDDMIDELPTLAVLAAFAEGVTRITGAEEL-RVKES 324 Score = 34.6 bits (80), Expect = 0.054 Identities = 52/252 (20%), Positives = 91/252 (36%), Gaps = 48/252 (19%) Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSL------- 233 +++A+L+ G+T + N R + + L ++GAKI G I+GV Sbjct: 15 ALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIE-DGGEVAVIEGVGGKEPQAELD 73 Query: 234 ---SGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSL----LKTVFKVMRQTGVDID 286 SGT R+L V +TG D SL + + +RQ G +I Sbjct: 74 LGNSGTTARLLTG--VLALADGEVVLTG--------DESLRKRPMGRLVDALRQLGAEIS 123 Query: 287 IIDEGIRVRWNGEKLRPVDVITAPFPG----FPTDLQAQFM-AMMCCAAGISHITETIFE 341 ++ G + P+ I+ P PG +Q+ A++ A + + TI Sbjct: 124 SLEGGGSL--------PL-TISGPLPGGIVYISGSASSQYKSALLLAAPALQAVGITIVG 174 Query: 342 NR-------FMHVQELVRLGARISLS-GQTARVEGVQGLRGAPV-MATDLRASVSLVIAA 392 + + L G + S G+ V G Q + D ++ + AA Sbjct: 175 EPLKSRPYIEITLDLLGSFGVEVERSDGRKIVVPGGQKYGPQGYDVPGDYSSAAFFLAAA 234 Query: 393 LAAQGETEISRV 404 G + + Sbjct: 235 AITGGRVTLENL 246 >gnl|CDD|179423 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional. Length = 435 Score = 55.2 bits (134), Expect = 3e-08 Identities = 106/462 (22%), Positives = 173/462 (37%), Gaps = 114/462 (24%) Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60 M + II + L+GT+ + G+K+ S ++ + L T+ N+ D + LR+ Sbjct: 2 MMMLLIIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLRSEDTLATLNALRAL 61 Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSK------------MRASFWVI 108 GVEI D +V+ G L MR + Sbjct: 62 GVEIEDD------------------EVVVEGVGGGGLKEPEDVLDCGNSGTTMR--L-LT 100 Query: 109 GPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIK-IDGGYVDARVS-SKGLRGT 166 G L + G ++ G ++ RP+ +D L+ +G I+ D GY+ + K Sbjct: 101 GLLALQPGEVVLT--GDESLRKRPMGRLLDPLRQMGAKIEGRDEGYLPLTIRGGKKGGPI 158 Query: 167 SYTFPKVSVGATQV--MMMVASL-SHGDTSIYNAAREPEV----VDL-AHCLNSMGAKIS 218 Y P S V ++++A L + GDT EP ++ L + G ++ Sbjct: 159 EYDGPVSS---QFVKSLLLLAPLFAEGDTET--TVIEPLPSRPHTEITLRMLRAFGVEVE 213 Query: 219 ---GMGSSTITIQGVTSLSGTRHRILPDRIEAGTYAMAVAMTGG-DVILK-------MTD 267 G G I I+G L G + D A + A A+TGG +V + Sbjct: 214 NVEGWGYRRIVIKGGQRLRGQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGG 273 Query: 268 SSLLKTVFKVMRQTGVDIDIIDE--------GIRVRWNGEKLRPVDVITAPFPGFPTDLQ 319 ++ V+ + G DI+I +E IRVR +L+ +D+ P D Sbjct: 274 KAI----IDVLEKMGADIEIENEREGGEPVGDIRVR--SSELKGIDI---DIPDII-DE- 322 Query: 320 AQFM---AMMCCAAGISHIT--------ETIFENRF--MHVQELVRLGARISLSGQTARV 366 + A G + I ET +R M EL +LGA + Sbjct: 323 --APTLAVLAAFAEGTTVIRNAEELRVKET---DRIAAM-ATELRKLGAEV--------E 368 Query: 367 EG-----VQGLRGAPVMAT--DLRASVSLVIAALAAQGETEI 401 E + G A V+ + D R +++ IA LAA+G I Sbjct: 369 ETEDGLIITGGPLAGVVDSYGDHRIAMAFAIAGLAAEGPVTI 410 Score = 32.1 bits (74), Expect = 0.26 Identities = 68/351 (19%), Positives = 125/351 (35%), Gaps = 90/351 (25%) Query: 133 VDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVG----ATQVMMMVASLS 188 +++L++LGV +I+ V V G G + G +++ + +L Sbjct: 51 TLATLNALRALGV--EIEDDEV--VVEGVGGGGLKEPEDVLDCGNSGTTMRLLTGLLALQ 106 Query: 189 HGDTSI---YNAAREP--EVVDLAHCLNSMGAKISGMGSST--ITIQGVTSLSGTRHRIL 241 G+ + + + P ++D L MGAKI G +TI+G Sbjct: 107 PGEVVLTGDESLRKRPMGRLLDP---LRQMGAKIEGRDEGYLPLTIRGGKKGGPIE---- 159 Query: 242 PDRIEAGTYAMAVA-------------MTGGDVILKMTDSSLLKT------VFKVMRQTG 282 Y V+ GD + + L + +++R G Sbjct: 160 --------YDGPVSSQFVKSLLLLAPLFAEGDTETTVIEP--LPSRPHTEITLRMLRAFG 209 Query: 283 VDIDIIDE---GIRVRWNGEKLRPVDVITAPFPGFPTDL-QAQFMAMMCCAAGISHIT-E 337 V+++ ++ V G++LR D+ P D A F G S +T Sbjct: 210 VEVENVEGWGYRRIVIKGGQRLRGQDITV------PGDPSSAAFFLAAAAITGGSEVTIT 263 Query: 338 TIFEN------RFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRA-SVSL-- 388 + N + V L ++GA I + + E V +R V +++L+ + + Sbjct: 264 NVGLNSTQGGKAIIDV--LEKMGADIEIENEREGGEPVGDIR---VRSSELKGIDIDIPD 318 Query: 389 ------VIAALA--AQGETEISRVYHLDRGFEC-----LEKKLSRCGALIQ 426 +A LA A+G T I L R E + +L + GA ++ Sbjct: 319 IIDEAPTLAVLAAFAEGTTVIRNAEEL-RVKETDRIAAMATELRKLGAEVE 368 >gnl|CDD|150914 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor Srh. Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srh is part of the Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. Length = 302 Score = 33.7 bits (78), Expect = 0.11 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 311 FPGFPTDLQAQFMAMMCCAAGISHITETIFENRF 344 + G PT +Q G+S I +FENR+ Sbjct: 80 YLGVPTPIQFYIGVTSLALVGVSII--LLFENRY 111 >gnl|CDD|184828 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional. Length = 735 Score = 31.9 bits (73), Expect = 0.30 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 47/243 (19%) Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVI----------KIDGGYVDARVSSKGLRGTSYTF 170 L G ++ RP++ L+ +G VI I GG L+G Y Sbjct: 413 VLTGDASLSKRPMERVAKPLREMGAVIETGEEGRPPLSIRGGQR--------LKGIHYDL 464 Query: 171 PKVSVGATQVMM--MVASL-SHGDTSIYNAAREPEVVDLAHC---LNSMGAKISGMGSST 224 P + + QV ++A L + G+TS+ EP H L G + G+ T Sbjct: 465 P---MASAQVKSCLLLAGLYAEGETSV----TEPAPT-RDHTERMLRGFGYPVKVEGN-T 515 Query: 225 ITIQGVTSLSGTRHRILPDRIEAGTYAMAVAMTGG-DVILKMTDSSLLKT-VFKVMRQTG 282 I+++G L+ T + D A + +A ++ G ++ L+ + +T V +++ G Sbjct: 516 ISVEGGGKLTATDIEVPADISSAAFFLVAASIAEGSELTLEHVGINPTRTGVIDILKLMG 575 Query: 283 VDIDIIDEG---------IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGIS 333 DI + +E IRVR G +L+ +D+ P + F+A CA G + Sbjct: 576 ADITLENEREVGGEPVADIRVR--GARLKGIDIPEDQVPLAIDEFPVLFVA-AACAEGRT 632 Query: 334 HIT 336 +T Sbjct: 633 VLT 635 >gnl|CDD|184016 PRK13381, PRK13381, peptidase T; Provisional. Length = 404 Score = 31.8 bits (73), Expect = 0.34 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Query: 131 RPVDLFVDSLKSLGV---VIKIDGGYVDARVSSKGL 163 R VDL D++K LG+ VI + GG A +S+KGL Sbjct: 329 RAVDLAFDAMKELGIEPKVIPMRGGTDGAALSAKGL 364 >gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase. Length = 443 Score = 30.9 bits (70), Expect = 0.72 Identities = 15/61 (24%), Positives = 38/61 (62%) Query: 11 KLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSY 70 +++GT+ + G+K+ S +++ + L+ T ++N+ D D++ ++ L++ G+ + DS Sbjct: 11 EISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSEN 70 Query: 71 N 71 N Sbjct: 71 N 71 >gnl|CDD|118954 pfam10433, MMS1, Mono-functional DNA-alkylating agent methyl methanesulfonate. MMS1 is a protein that protects against replication-dependent DNA damage in Saccharomyces cerevisiae. Length = 1134 Score = 30.7 bits (69), Expect = 0.77 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 17/177 (9%) Query: 41 LENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSK 100 L+ I D+ +KL + V S +Y N ST R + + K Sbjct: 785 LQVISDIGALKLYLLASDGLDVSENSYITYYSTNTDLIST---RSE-----NKKFLYIDK 836 Query: 101 MRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS 160 + V L + E I L ++ ++F D+ L V ++ ++ ++S+ Sbjct: 837 LNRMLIVNTKLNSVEC---IKLQNDKSLRLDSCNIFDDNDNLLESVKQLGYKNINKQLSN 893 Query: 161 KGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKI 217 + T+++ + +++++ +L I P + + G Sbjct: 894 LIIELTNFSS------SYKLVLLYPALGKISNHIITNTLYPLLKKHLDIAINTGDSP 944 >gnl|CDD|181275 PRK08185, PRK08185, hypothetical protein; Provisional. Length = 283 Score = 30.5 bits (69), Expect = 0.82 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 13/86 (15%) Query: 176 GATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLN-SMGAKISGMGSSTITIQGVTSLS 234 G T VM+ + L + + N A EVV+LAH + S+ ++ +G++ +I+G Sbjct: 91 GFTSVMIDGSLLPYEE----NVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEG----- 141 Query: 235 GTRHRILPDRIEAGTYAMAVAMTGGD 260 G I D +A + V+ TG D Sbjct: 142 GVSEIIYTDPEQAEDF---VSRTGVD 164 >gnl|CDD|183257 PRK11649, PRK11649, putative peptidase; Provisional. Length = 439 Score = 30.0 bits (68), Expect = 1.1 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 7/33 (21%) Query: 343 RFMHVQEL-------VRLGARISLSGQTARVEG 368 R+MH+++L V+ G RI+LSG T R G Sbjct: 358 RYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTG 390 >gnl|CDD|163259 TIGR03429, arom_pren_DMATS, aromatic prenyltransferase, DMATS type. Members of this protein family are mostly fungal enzymes of secondary metabolite production. Characterized or partially characterized members include several examples of dimethylallyltryptophan synthase, a brevianamide F prenyltransferase, LtxC from lyngbyatoxin biosynthesis, and a probable dimethylallyl tyrosine synthase. Length = 406 Score = 29.6 bits (67), Expect = 1.6 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 33/155 (21%) Query: 234 SGTRHRILPDRIEAGTYAMAVAMTGGDVILKM----------TDSSLLKTVFKVMRQTGV 283 + LP +A + GG V+LK+ T + VF+ +R+ Sbjct: 147 AALLREKLPKGPLRPQMWLAFDLKGGGVVLKVYFYPRLKAAATGVPSSELVFEAIRRLDP 206 Query: 284 DIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGIS------HITE 337 G+ L +D++ P L+ + +A+ C S Sbjct: 207 K-------------GDLLPALDLLEEYLASRPATLRPELLAIDCVDPAKSRLKIYLATPS 253 Query: 338 TIFENRFMHVQELVRLGARISLSGQTARVEGVQGL 372 F V+++ LG R++ +E ++ L Sbjct: 254 VSFA----TVRDVWTLGGRLTDPTTMKGLELLREL 284 >gnl|CDD|185299 PRK15401, PRK15401, alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional. Length = 213 Score = 29.4 bits (67), Expect = 1.8 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%) Query: 227 IQGVTSLSGTRHRILPDRIEAGTYAMAVAMT 257 I+ V + + RH + P G Y M+VAMT Sbjct: 38 IEAVAAQAPFRHMVTP-----GGYTMSVAMT 63 >gnl|CDD|132306 TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. Length = 546 Score = 29.3 bits (66), Expect = 1.9 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 6/32 (18%) Query: 168 YTFPKVSVGATQVMMMVASLSHGDTSIYNAAR 199 YTFP +M++V +LS D +Y AAR Sbjct: 143 YTFPHA------LMILVTALSLADGRLYEAAR 168 >gnl|CDD|180989 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated. Length = 365 Score = 29.2 bits (66), Expect = 1.9 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 349 ELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLD 408 L R GAR + + E R AP A V I A + E +LD Sbjct: 294 RLARAGARGAPPPEAVPGEAALLARLAPDARLRRWAEVWEKIGRRARRTEA-----VNLD 348 Query: 409 R 409 R Sbjct: 349 R 349 >gnl|CDD|181662 PRK09125, PRK09125, DNA ligase; Provisional. Length = 282 Score = 29.1 bits (66), Expect = 2.5 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 8/35 (22%) Query: 291 GIRVRWNGEKL--RPVDVITAP------FPGFPTD 317 G+R W+G++L R + I AP FP FP D Sbjct: 53 GVRAYWDGKQLLTRQGNPIAAPAWFTAGFPPFPLD 87 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 28.6 bits (64), Expect = 3.0 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Query: 33 LLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSY 77 LL L L ++P L IR L++ G+ I +Y + ++ Sbjct: 231 LLARVHLDLPSLPKL------IRSLQAQGIAIDMAYTYQEAEDAF 269 >gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. Length = 717 Score = 28.3 bits (63), Expect = 4.1 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 258 GGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTD 317 G ++L + S + T+ +RQTG + + ++ RP V+ +P PG P D Sbjct: 516 GRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPAD 574 Query: 318 LQAQFMAMMCCAAGI 332 A G+ Sbjct: 575 FDVAGTIDAALARGL 589 >gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional. Length = 673 Score = 27.7 bits (61), Expect = 5.4 Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 14 GTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSD 67 GT+ + G+K+ S V++ + L T+ N+ D D ++++ L GV++ D Sbjct: 253 GTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRD 306 >gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional. Length = 1485 Score = 27.9 bits (63), Expect = 5.9 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%) Query: 354 GARISLSGQTARVEGVQGLRGAPV 377 GAR LSG+ AR G QG+ AP+ Sbjct: 1249 GAR--LSGEIARRHGNQGMADAPI 1270 >gnl|CDD|161852 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. Length = 441 Score = 27.5 bits (61), Expect = 7.4 Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 262 ILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIR 293 IL +SL+K +M+ GV+I+ DE I+ Sbjct: 341 ILTEPKNSLIKQYKALMKTEGVNIEFSDEAIK 372 >gnl|CDD|150775 pfam10139, Virul_Fac, Putative bacterial virulence factor. Members of this family of prokaryotic proteins include various putative virulence factor effector proteins. Their exact function is, as yet, unknown. Length = 852 Score = 27.4 bits (61), Expect = 7.4 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%) Query: 341 ENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSL---VIAALAAQ 396 + ++V L RLG + E + PV +L A+VSL V+AAL A+ Sbjct: 260 ADSIINVDALERLG--------SPADEPIVVR---PVKEGELGAAVSLSLAVLAALTAE 307 >gnl|CDD|179962 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU; Provisional. Length = 443 Score = 27.3 bits (62), Expect = 7.9 Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 262 ILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIR 293 IL +SL+K ++ GV ++ D+ IR Sbjct: 343 ILTEPKASLIKQYQALLATEGVTLEFTDDAIR 374 >gnl|CDD|163479 TIGR03767, P_acnes_RR, metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202. Length = 496 Score = 27.1 bits (60), Expect = 8.4 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 334 HITETIFENRFMHVQELVRLGAR----ISLSGQTARVEGVQGLRGAPVMATDLRASVS 387 H+ + R ++ R ++L G A V+ V L+G PV T L VS Sbjct: 44 HLVDVQSPMRVEYLHPFTGSAFRPQEFLTLHGAVALVQRVNALQGGPVTGTALDFVVS 101 >gnl|CDD|179600 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional. Length = 655 Score = 27.1 bits (61), Expect = 8.5 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 9/40 (22%) Query: 279 RQTGVDIDIIDE-GIRVRWNGEK--LRPVDVITAPFPGFP 315 R G+ ++ DE G V GE L V T PFP P Sbjct: 443 RGLGMAVEAWDEDGRPVV--GEVGEL----VCTKPFPSMP 476 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.136 0.387 Gapped Lambda K H 0.267 0.0611 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,878,347 Number of extensions: 452770 Number of successful extensions: 1036 Number of sequences better than 10.0: 1 Number of HSP's gapped: 999 Number of HSP's successfully gapped: 37 Length of query: 430 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 334 Effective length of database: 3,920,105 Effective search space: 1309315070 Effective search space used: 1309315070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.8 bits)