RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine
1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(430 letters)
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
1naw_A 1q3g_A* 1dlg_A 1ryw_A* 2z2c_A* 1uae_A* 3iss_A*
1a2n_A* 2rl1_A* 2rl2_A*
Length = 419
Score = 417 bits (1073), Expect = e-117
Identities = 196/430 (45%), Positives = 274/430 (63%), Gaps = 12/430 (2%)
Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
MD+ ++ G +L G + ISGAKNA+LP++ A+LL E + ++N+P L D+ +++L
Sbjct: 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQL 60
Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
G ++ ++ ++ + + YDLV MRAS W +GPL+AR G ++
Sbjct: 61 GTKV-----------ERDGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQV 109
Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180
SLPGGCAIG RPVDL + L+ LG IK++ GYV A V+ L+G KVSVGAT
Sbjct: 110 SLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVN-GRLKGAHIVMDKVSVGATVT 168
Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240
+M A+L+ G T I NAAREPE+VD A+ L ++GAKISG G+ ITI+GV L G +R+
Sbjct: 169 IMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRV 228
Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300
LPDRIE GT+ +A A++GG ++ + L V +R+ G DI+ ++ I + +G++
Sbjct: 229 LPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKR 288
Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360
+ V V TAP P FPTD+QAQF + A G ITETIFENRFMHV EL+R+GA +
Sbjct: 289 PKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIE 348
Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420
T GV+ L GA VMATDLRAS SLV+A A+G T + R+YH+DRG+E +E KL
Sbjct: 349 SNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRA 408
Query: 421 CGALIQRIKG 430
GA I+R+KG
Sbjct: 409 LGANIERVKG 418
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB:
1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A*
1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A*
2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A
Length = 450
Score = 259 bits (662), Expect = 1e-69
Identities = 75/438 (17%), Positives = 148/438 (33%), Gaps = 33/438 (7%)
Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
M+ + + ++G + + G+K+ S ++ + L S T L N+ D D++ ++ L
Sbjct: 25 MESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKL 84
Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
GV + + T +L + G
Sbjct: 85 GVNY----RLSADKTTCEVE---GLGQAFHTTQPLELFLGNAGTAMRPLAAALCLGQGDY 137
Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVSSKGLRGTSYTF-PKVSVGA 177
L G + RP+ VD+L+ G I+ + R+ GL+ + T +S
Sbjct: 138 VLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISSQF 197
Query: 178 TQVMMMVASLSHGDTSIY---NAAREPEVVDLAHCLNSMGAKISGMGSSTITI-QGVTSL 233
+M A L+ G +I +P + H + G ++ I G + +
Sbjct: 198 LTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPAGQSYV 257
Query: 234 SGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKT---VFKVMRQTGVDIDIIDE 290
S + + D A + A A+ GG+V + + ++ + + G I+ D+
Sbjct: 258 SPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDD 317
Query: 291 GIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHV--- 347
V +L VD+ P A +A A + ++ R
Sbjct: 318 --YVIARRGELNAVDLDFNHIPD-----AAMTIATTALFAKGTTAIRNVYNWRVKETDRL 370
Query: 348 ----QELVRLGARISLSGQTARVEGVQGLRGAPVMA-TDLRASVSLVIAALAAQGETEIS 402
EL ++GA + + L A + D R ++ + AL+ I+
Sbjct: 371 AAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVALSD-TPVTIN 429
Query: 403 RVYHLDRGFECLEKKLSR 420
+ F K ++
Sbjct: 430 DPKCTSKTFPDYFDKFAQ 447
>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan,
structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus VF5}
Length = 425
Score = 257 bits (657), Expect = 3e-69
Identities = 174/429 (40%), Positives = 248/429 (57%), Gaps = 15/429 (3%)
Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
D I GG L G + ISGAKNA+LP+M A++LT E T+ N+PDL DV+ + +LR
Sbjct: 10 RDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLREL 69
Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
G E+ ++ N S I + +++ +MRAS +GPLL R G A +
Sbjct: 70 GAELEFLNNTVFINPS-----------INSFITNQEIIRRMRASVLSLGPLLGRFGRAVV 118
Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180
LPGGC+IG RP+D + K ++ V+ K R + F V+V T+
Sbjct: 119 GLPGGCSIGARPIDQHLKFFKE--AGADVEVREGYVYVNLKEKRRVHFKFDLVTVTGTEN 176
Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240
++ + ++ + N A EPEV+DL L MGA + G S G +L G H +
Sbjct: 177 ALLYLASVPEESILENIALEPEVMDLIEVLKKMGAHVKVEGRSAYVK-GSENLKGFTHSV 235
Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300
+PDRIEAGT+ + +T G+++L+ + L+ V + ++ G + + + G + E
Sbjct: 236 IPDRIEAGTFMVGAVLTDGEILLENARINHLRAVVEKLKLIGGE-VVEENGNLRVFRKES 294
Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360
LR D+ T +PGFPTD+QAQFMA++ A G S I E IFE+RF H QEL RLGA I++
Sbjct: 295 LRACDIETQVYPGFPTDMQAQFMALLSVAKGKSRIKENIFEHRFHHAQELNRLGANITVR 354
Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420
G TA VEGV+ L G+ V +TDLRAS SLV+A L AQGET + VYHLDRG+E LE+KL +
Sbjct: 355 GNTAYVEGVERLYGSEVYSTDLRASASLVLAGLVAQGETVVRDVYHLDRGYEKLEEKLKK 414
Query: 421 CGALIQRIK 429
GA I+R+
Sbjct: 415 LGADIERVS 423
>1g6s_A EPSP synthase; two-domain structure, inside-OUT alpha-beta barrel,
transferase; HET: S3P GPJ; 1.50A {Escherichia coli}
SCOP: d.68.2.2 PDB: 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A*
2aay_A* 2pq9_A* 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A*
1q36_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1eps_A 1p88_A
1p89_A
Length = 427
Score = 253 bits (648), Expect = 4e-68
Identities = 79/430 (18%), Positives = 148/430 (34%), Gaps = 18/430 (4%)
Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
M+ + + +++GTI + G+K+ S ++ + L L N+ D DV+ ++ L +
Sbjct: 1 MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTAL 60
Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
GV + + + G+ +L + G I
Sbjct: 61 GVSY-------TLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDI 113
Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIK--IDGGYVDARVSSKGLRGTSYTFPKVSVGAT 178
L G + RP+ VD+L+ G I Y R+ G VS
Sbjct: 114 VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFL 173
Query: 179 QVMMMVASLSHGDTSIY---NAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSG 235
++M A L+ DT I + +P + + + + G +I ++G S
Sbjct: 174 TALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQS 233
Query: 236 TR-HRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKT---VFKVMRQTGVDIDIIDEG 291
+ + D A + A A+ GG V + + ++ V+ + G I D+
Sbjct: 234 PGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDY 293
Query: 292 IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELV 351
I +D+ P A F I + + F EL
Sbjct: 294 ISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELR 353
Query: 352 RLGARISLSGQTARVEGVQGLRGAPVMA-TDLRASVSLVIAALAAQGETEISRVYHLDRG 410
++GA + R+ + L A + D R ++ + AL+ T I +
Sbjct: 354 KVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVT-ILDPKCTAKT 412
Query: 411 FECLEKKLSR 420
F ++L+R
Sbjct: 413 FPDYFEQLAR 422
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
PDB: 1rf5_A 1rf4_A*
Length = 427
Score = 215 bits (549), Expect = 1e-56
Identities = 79/436 (18%), Positives = 149/436 (34%), Gaps = 32/436 (7%)
Query: 4 IKI-IGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGV 62
+K+ L+G I + G K+ S +I L + +I DV +++ R GV
Sbjct: 1 MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGV 60
Query: 63 EILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLARE-GYARIS 121
EI + + + + L + ++ + + +
Sbjct: 61 EI----------EDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVE 110
Query: 122 LPGGCAIGTRPVDLFVDSLKSLGVVIKID---GGYVDARVSSKGLRGTSYTFPKVSVGAT 178
+ G ++ RP+D LK +GV I +K LR Y P S
Sbjct: 111 MFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVK 170
Query: 179 QVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRH 238
+M A + G++ I +E L G +S IT+QG L+G +
Sbjct: 171 SALMFAALQAKGESVIIE--KEYTRNHTEDMLQQFGGHLSVD-GKKITVQGPQKLTGQKV 227
Query: 239 RILPDRIEAGTYAMAVAMTGG------DVILKMTDSSLLKTVFKV-MRQTGVDIDIIDEG 291
+ D A + +A + +V + T + ++ + + + +ID + +
Sbjct: 228 VVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKS 287
Query: 292 IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCA-----AGISHITETIFENRFMH 346
+ L+ ++ A P +L + + + +
Sbjct: 288 ATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVV 347
Query: 347 VQELVRLGARISLSGQTARVEGVQGLRGAPVMAT-DLRASVSLVIAAL-AAQGETEISRV 404
L +GA I+ + ++G L GA V D R + IAAL A GE E+ R
Sbjct: 348 ADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRA 407
Query: 405 YHLDRGFECLEKKLSR 420
++ + L
Sbjct: 408 EAINTSYPSFFDDLES 423
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Length = 445
Score = 202 bits (515), Expect = 1e-52
Identities = 68/446 (15%), Positives = 141/446 (31%), Gaps = 38/446 (8%)
Query: 8 GGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSD 67
+ L+GT+ I G K+ S + L S + + + DV + +++ G I
Sbjct: 9 KSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARI--- 65
Query: 68 SSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCA 127
+ ++ D + +G + + + G +
Sbjct: 66 ----RKEGDTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTF--IGDAS 119
Query: 128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARV--SSKGLRGTSYTFPKVSVGATQVMMMVA 185
+ RP+ ++ L+ +GV +K + G K +Y P S +++
Sbjct: 120 LTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGPKTPTPITYRVPMASAQVKSAVLLAG 179
Query: 186 SLSHGDTSIYNAA--REPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPD 243
+ G T++ R+ L ++ + G TI ++G L+G + D
Sbjct: 180 LNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGD 239
Query: 244 RIEAGTYAMAVAMTGG--DVILKMTDSSLLKTVFKVMRQTGV-------DIDIIDEGIRV 294
+A + G IL + + + +++ G + ++ +
Sbjct: 240 PSSTAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADL 299
Query: 295 RWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQ------ 348
R L+ V V P D A G + + + E R
Sbjct: 300 RVRSSTLKGVTVPEDRAPSMI-DEYPILAVAAAFAEGATVMN-GLEELRVKESDRLSAVA 357
Query: 349 -ELVRLGARISLSGQTARVEG------VQGLRGAPVMA-TDLRASVSLVIAALAAQGETE 400
L G + V G + GA V D R ++S ++ L ++
Sbjct: 358 NGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVT 417
Query: 401 ISRVYHLDRGFECLEKKLSRCGALIQ 426
+ + F ++ GA I+
Sbjct: 418 VDDATMIATSFPEFMDLMAGLGAKIE 443
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway,
EPSP synthase, structural genomics; HET: S3P; 1.15A
{Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Length = 450
Score = 145 bits (366), Expect = 2e-35
Identities = 72/437 (16%), Positives = 140/437 (32%), Gaps = 35/437 (8%)
Query: 6 IIGGNKLNGTIAISGAKNASLPVMI----ASLLTSETLTLENIPDLADVKLLIRILRSHG 61
+ T+ + G+K+ + ++ A+ T+ D +L++ L++ G
Sbjct: 7 PTAPTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLG 66
Query: 62 VEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARIS 121
+ + S + R D + + P LA G ++
Sbjct: 67 LRV----------DGVGSELTVSGRIEPGPGARVDC--GLAGTVLRFVPPLAALGSVPVT 114
Query: 122 LPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFP-KVSVGATQV 180
G RP+ +D+L+ LGV + G R + GT S + +
Sbjct: 115 FDGDQQARGRPIAPLLDALRELGVAVDGTGLPFRVRGNGSLAGGTVAIDASASSQFVSGL 174
Query: 181 MMMVASLSHGDT---SIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTR 237
++ AS + G T + + P + A L G I + ++ ++ R
Sbjct: 175 LLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTPNRWQVRPGP-VAARR 233
Query: 238 HRILPDRIEAGTYAMAVAMTGGDVI---LKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRV 294
I PD A + A ++GG V + ++RQ + D + V
Sbjct: 234 WDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEV 293
Query: 295 RWN---GEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHV-QEL 350
R + + P + +GI+H+ +R + E+
Sbjct: 294 RGPTGYDGFDVDLRAVGELTPSVAALAALASPGSVSRLSGIAHL-RGHETDRLAALSTEI 352
Query: 351 VRLGARISLSGQTARVEGVQGLRGAPVMA-TDLRASVSLVIAALAAQGETEISRVYHLDR 409
RLG + + LR A D R +++ I L G + + +
Sbjct: 353 NRLGGTCRETPDGLVITATP-LRPGIWRAYADHRMAMAGAIIGLRVAGVE-VDDIAATTK 410
Query: 410 ---GFECLEKKLSRCGA 423
F L ++ G
Sbjct: 411 TLPEFPRLWAEMVGPGQ 427
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 68.8 bits (168), Expect = 2e-12
Identities = 88/507 (17%), Positives = 142/507 (28%), Gaps = 198/507 (39%)
Query: 30 IASLLTSETLTLENIPDLADVKLLIRI-----------LRSHGVEILSDSSYNDQNKSYS 78
A LL TL K LI+ L + + +
Sbjct: 105 AAKLLQENDTTL------VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 79 STMHF-------RC-RHIVDLTGSY-----DLVSKM------------RASF-------- 105
F + DL +Y DL+ A
Sbjct: 159 I---FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 106 --WVIGP--------LLAREGYARISLPGGCAIGTRPVDL--FVDSLKSLGVVIKIDGGY 153
W+ P LL+ IS P IG + L +V + K LG G
Sbjct: 216 LEWLENPSNTPDKDYLLS----IPISCP---LIGV--IQLAHYVVTAKLLGF----TPGE 262
Query: 154 VDARVSSKGLRGTSYTFPKVSVGATQ---VMMMVASLSHGDTSIYNAAREPEVVDLAHCL 210
+ + L+G + G +Q + +A + S + + R+ + + L
Sbjct: 263 LRSY-----LKGAT--------GHSQGLVTAVAIAE-TDSWESFFVSVRK--AITV---L 303
Query: 211 NSMGAKISGMGSSTITIQ---GVTSLSGTRHRILPDRIEAG----TYAMAVAMTGG---- 259
+G + TSL + IL D +E + ++++
Sbjct: 304 FFIGVRC----------YEAYPNTSLPPS---ILEDSLENNEGVPSPMLSIS---NLTQE 347
Query: 260 --DVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFP----G 313
+ T+S L +Q V+I ++ NG + + V++ P P G
Sbjct: 348 QVQDYVNKTNSHLPAG-----KQ--VEISLV--------NGA--KNL-VVSGP-PQSLYG 388
Query: 314 FPTDLQAQFMAMMCCAAGI--SHITET----IFENRFM------HVQELVRLGARIS--L 359
L+ +G+ S I + F NRF+ H LV I+ L
Sbjct: 389 LNLTLRK-----AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 360 SGQTARVEGVQGLRGAPVMAT----DLRASVSLVIAALAAQGETEISRVY---------- 405
++ PV T DLR + + V
Sbjct: 444 VKNNVSFNAKD-IQ-IPVYDTFDGSDLRVLSGSISERIVDCIIRL--PVKWETTTQFKAT 499
Query: 406 H-LD--RGFECLEKKLSRCGALIQRIK 429
H LD G S G L R K
Sbjct: 500 HILDFGPG------GASGLGVLTHRNK 520
Score = 42.2 bits (99), Expect = 2e-04
Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 35/180 (19%)
Query: 154 VDARVSSKGL------RGTSYTF--PKVSVGATQVMMMVASLSHGDTSIYNAAREPEVV- 204
VD ++ ++ + TSYTF K + ATQ +L+ + + + + ++
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ--PALTLMEKAAFEDLKSKGLIP 1754
Query: 205 -DLAHCLNSMG--AKISGMGSSTITIQGVTSL---SGTRHRILPDRIEAG--TYAMAVAM 256
D +S+G A ++ + + ++I+ + + G ++ R E G Y M +A+
Sbjct: 1755 ADATFAGHSLGEYAALASL-ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-IAI 1812
Query: 257 TGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK--------LRPVDVIT 308
G V + +L V +V ++TG ++I++ +N E LR +D +T
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVN------YNVENQQYVAAGDLRALDTVT 1866
Score = 37.6 bits (87), Expect = 0.005
Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 50/130 (38%)
Query: 26 LPVMI---ASLLTSETLTLENIPDLADVKLLI-----RI----------LRSHGVEILSD 67
LPV + LL + + DL + +I LR I
Sbjct: 421 LPVASPFHSHLLVPASDLINK--DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 68 -----SSYNDQNKSYSSTMHFRCRHIVD-----LTGSYDLVSKMRASFWVIGPLLAR--E 115
+ + +T F+ HI+D +G +G L R +
Sbjct: 479 IVDCIIRLPVK---WETTTQFKATHILDFGPGGASG--------------LGVLTHRNKD 521
Query: 116 GY-ARISLPG 124
G R+ + G
Sbjct: 522 GTGVRVIVAG 531
Score = 32.2 bits (73), Expect = 0.21
Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 46/150 (30%)
Query: 301 LRPVDV----ITAPFPGFPTD-------LQAQFMAMMCCAAGISHITETI-FENRFMHVQ 348
RP+ + + PT LQ QF + TE ++
Sbjct: 6 TRPLTLSHGSLEHVLL-VPTASFFIASQLQEQF------NKILPEPTEGFAADDEPTTPA 58
Query: 349 ELV-R-LG---ARISLSGQTARVEGVQG---------LRGAPVMATDLRASVSLVIAALA 394
ELV + LG + + S + + L G D+ A + A L
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-----NDIHA----LAAKLL 109
Query: 395 AQGETEISRVYHLDRGF----ECLEKKLSR 420
+ +T + + L + + ++ +
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDK 139
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 41.3 bits (96), Expect = 5e-04
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 97 LVSKMRASFWVIGPLLAREGYARISLP-GGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVD 155
++ M A WV L++ G I P G CA VD+ V+++ S I I GGY D
Sbjct: 1080 FINTMSA--WVNMLLISSSG--PIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD 1135
Query: 156 ARVSSK----GLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREP-----EVVDL 206
+ ++ TS T + G T A +S T+ N E +++
Sbjct: 1136 FQEEGSFEFGNMKATSNTLEEFEHGRTP-----AEMSRPATTTRNGFMEAQGAGIQIIMQ 1190
Query: 207 AHCLNSMGAKISGM 220
A MG I G+
Sbjct: 1191 ADLALKMGVPIYGI 1204
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.094
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 17/43 (39%)
Query: 139 SLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQVM 181
+LK L +K+ Y D S+ P +++ AT M
Sbjct: 21 ALKKLQASLKL---YADD--SA----------PALAIKAT--M 46
Score = 32.3 bits (72), Expect = 0.24
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 348 QELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASV 386
Q L +L A + L + AP +A ++A++
Sbjct: 20 QALKKLQASLKLYADDS----------APALA--IKATM 46
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures,
university of washington, NIH, niaid, structural
genomics; 1.55A {Cryptosporidium parvum iowa II}
Length = 271
Score = 32.1 bits (72), Expect = 0.24
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 19/94 (20%)
Query: 1 MDRIKIIGGN-KLNGTIA--------ISGAKNASLPVMIASLLTSETLTLENIPDLADVK 51
M R +GGN K NGT ++++ V + ++ VK
Sbjct: 22 MSRKYFVGGNFKCNGTKESLKTLIDSFKQVESSNSEVYVFP----------TSLHISLVK 71
Query: 52 LLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRC 85
+I S + N +++ +
Sbjct: 72 EFFGNDHPGVFKIGSQNISCTGNGAFTGEVSCEM 105
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 30.3 bits (67), Expect = 0.77
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 191 DTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEAGTY 250
S Y A P++ L + K+ GS+T + ++L TRH P+ I A +
Sbjct: 152 VQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGW 211
Query: 251 AMAVAMTGGDVIL 263
+ + IL
Sbjct: 212 SQPCDVWSIGCIL 224
>2oay_A C1-inhibitor, plasma protease C1 inhibitor, C1 INH, C1INH, C1
esterase; latent serpin, RCL insertion, immune
system,hydrolase inhibitor; HET: NAG; 2.35A {Homo
sapiens}
Length = 390
Score = 29.8 bits (66), Expect = 1.1
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 385 SVSLVIAALAAQGET--EISRVYHLDRGFECLEKKLS 419
+ L L A T + + + F C+ + L
Sbjct: 65 ASLLTQVLLGAGENTKTNLESILSYPKDFTCVHQALK 101
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding
domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha
magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana
tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A*
1hx9_A* 1hxc_A* 5eas_A 1hxg_A 5eat_A*
Length = 550
Score = 29.1 bits (65), Expect = 2.2
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 30 IASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSD--SSYNDQNKSYSSTMHFRCRH 87
I +L N DL L R+LR HG I + S + D+N F+
Sbjct: 89 IDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGK------FKESL 142
Query: 88 IVDLTGSYDLVSKMRASF 105
D+ G +L AS
Sbjct: 143 ASDVLGLLNL---YEASH 157
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 28.8 bits (64), Expect = 2.6
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 131 RPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTS 167
+ + +L +LG++ K + + ++ + L TS
Sbjct: 71 GKAAILLHALAALGLLTKEGDAFRNTALTERYLTTTS 107
>1sr9_A 2-isopropylmalate synthase; TIM barrel, transferase; 2.00A
{Mycobacterium tuberculosis} SCOP: a.5.7.1 c.1.10.5
d.270.1.1 PDB: 3fig_A
Length = 644
Score = 28.7 bits (63), Expect = 2.7
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Query: 127 AIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQVMMMVAS 186
G P+ FV +L +G + + Y A + + +Y V++ +
Sbjct: 529 GSGNGPLAAFVHALADVGFDVAVLDYYEHAMSAGDDAQAAAYVEASVTIASPAQPGEAGR 588
Query: 187 LSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQ 228
+ +I + A+ E A + G+G +
Sbjct: 589 HASDPVTIASPAQPGEAGRHAS-DPVTSKTVWGVGIAPSITT 629
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A
{Thermotoga maritima} SCOP: c.1.1.1
Length = 255
Score = 27.9 bits (61), Expect = 4.3
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 1 MDRIKIIGGN-KLNGTIA 17
+ R I+ GN K++ TI+
Sbjct: 1 ITRKLILAGNWKMHKTIS 18
>1fep_A FEPA, ferric enterobactin receptor; outer membrane, iron transport,
transport, TONB, signal, membrane protein; 2.40A
{Escherichia coli K12} SCOP: f.4.3.3
Length = 724
Score = 27.9 bits (60), Expect = 4.6
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 57 LRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWV 107
+G + +Y Q T IV L+ ++D+ + + V
Sbjct: 625 FTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLSATWDVTKNVSLTGGV 675
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Length = 259
Score = 27.9 bits (61), Expect = 5.0
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 1 MDRIKIIGGN-KLNGTIA 17
M R ++GGN K+NG
Sbjct: 1 MARKFVVGGNWKMNGDKK 18
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase, transferase; 1.67A {Dengue virus 4} PDB:
2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A*
2jlr_A* 2bmf_A 2bhr_A
Length = 451
Score = 27.6 bits (61), Expect = 5.0
Identities = 20/148 (13%), Positives = 37/148 (25%), Gaps = 2/148 (1%)
Query: 257 TGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPT 316
TG +++ M ++ + R ++ ++DE R
Sbjct: 85 TGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAA 144
Query: 317 DLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAP 376
S+ E G+T V ++
Sbjct: 145 IFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWF--VPSIKAGN 202
Query: 377 VMATDLRASVSLVIAALAAQGETEISRV 404
+A LR S VI +TE +
Sbjct: 203 DIANCLRKSGKRVIQLSRKTFDTEYPKT 230
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Caenorhabditis elegans}
SCOP: c.1.1.1
Length = 275
Score = 27.3 bits (60), Expect = 7.0
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 1 MDRIKIIGGN-KLNGTIA 17
+ R +GGN K+NG A
Sbjct: 21 LTRKFFVGGNWKMNGDYA 38
>3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis,
glycolysis, pentose shunt, structural genomics; 1.55A
{Mycobacterium tuberculosis}
Length = 283
Score = 27.1 bits (59), Expect = 8.0
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 1 MDRIKIIGGN-KLNGTIA 17
+ R +I GN K+N
Sbjct: 23 VSRKPLIAGNWKMNLNHY 40
>3nda_A Serpin-2; vaccination target, TICK, hydrolase inhibitor; HET: 1PE;
1.80A {Ixodes ricinus}
Length = 377
Score = 26.9 bits (59), Expect = 8.3
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 385 SVSLVIAALAAQGET--EISRVYHLDRGFECLEKKLSRCGALIQRIK 429
S ++ +A A+G+T E+S+ L +R+K
Sbjct: 38 STAMGMAFAGARGQTQQELSQGLGFSDVDLTDAGVLDAYTHHTERLK 84
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate,
META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A
{Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A
1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 2vfh_A* 2vff_A
2vfg_A* 1vga_A 1woa_A* 1wob_A 2vfd_A 2vfe_A*
Length = 248
Score = 26.9 bits (59), Expect = 8.9
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 1 MDRIKIIGGN-KLNGTIA 17
M R + N K NGT+
Sbjct: 1 MARKYFVAANWKCNGTLE 18
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,594,977
Number of extensions: 167520
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 35
Length of query: 430
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 335
Effective length of database: 3,390,050
Effective search space: 1135666750
Effective search space used: 1135666750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)