RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine
1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (430 letters)



>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
           transferase (EPT, MurA, MurZ) {Enterobacter cloacae
           [TaxId: 550]}
          Length = 419

 Score =  321 bits (823), Expect = 8e-89
 Identities = 196/430 (45%), Positives = 274/430 (63%), Gaps = 12/430 (2%)

Query: 1   MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
           MD+ ++ G  +L G + ISGAKNA+LP++ A+LL  E + ++N+P L D+   +++L   
Sbjct: 1   MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQL 60

Query: 61  GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
           G ++               ++     ++ + +  YDLV  MRAS W +GPL+AR G  ++
Sbjct: 61  GTKV-----------ERDGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQV 109

Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180
           SLPGGCAIG RPVDL +  L+ LG  IK++ GYV A V+   L+G      KVSVGAT  
Sbjct: 110 SLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVN-GRLKGAHIVMDKVSVGATVT 168

Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240
           +M  A+L+ G T I NAAREPE+VD A+ L ++GAKISG G+  ITI+GV  L G  +R+
Sbjct: 169 IMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRV 228

Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300
           LPDRIE GT+ +A A++GG ++ +      L  V   +R+ G DI+  ++ I +  +G++
Sbjct: 229 LPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKR 288

Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360
            + V V TAP P FPTD+QAQF  +   A G   ITETIFENRFMHV EL+R+GA   + 
Sbjct: 289 PKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIE 348

Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420
             T    GV+ L GA VMATDLRAS SLV+A   A+G T + R+YH+DRG+E +E KL  
Sbjct: 349 SNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRA 408

Query: 421 CGALIQRIKG 430
            GA I+R+KG
Sbjct: 409 LGANIERVKG 418


>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 427

 Score =  208 bits (530), Expect = 7e-55
 Identities = 80/436 (18%), Positives = 151/436 (34%), Gaps = 32/436 (7%)

Query: 4   IKI-IGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGV 62
           +K+      L+G I + G K+ S   +I   L      + +I    DV   +++ R  GV
Sbjct: 1   MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGV 60

Query: 63  EILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREG-YARIS 121
           EI          +     +  +   +  L    + ++   +   +        G    + 
Sbjct: 61  EI----------EDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVE 110

Query: 122 LPGGCAIGTRPVDLFVDSLKSLGVVIKID---GGYVDARVSSKGLRGTSYTFPKVSVGAT 178
           + G  ++  RP+D     LK +GV I               +K LR   Y  P  S    
Sbjct: 111 MFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVK 170

Query: 179 QVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRH 238
             +M  A  + G++ I    +E         L   G  +S      IT+QG   L+G + 
Sbjct: 171 SALMFAALQAKGESVIIE--KEYTRNHTEDMLQQFGGHLSVD-GKKITVQGPQKLTGQKV 227

Query: 239 RILPDRIEAGTYAMAVAMTGG------DVILKMTDSSLLKTVFKV-MRQTGVDIDIIDEG 291
            +  D   A  + +A  +         +V +  T + ++  +  +  +    +ID + + 
Sbjct: 228 VVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKS 287

Query: 292 IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAM-----MCCAAGISHITETIFENRFMH 346
             +      L+  ++  A  P    +L    +       +        +     +   + 
Sbjct: 288 ATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVV 347

Query: 347 VQELVRLGARISLSGQTARVEGVQGLRGAPVMAT-DLRASVSLVIAAL-AAQGETEISRV 404
              L  +GA I+ +     ++G   L GA V    D R  +   IAAL  A GE E+ R 
Sbjct: 348 ADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRA 407

Query: 405 YHLDRGFECLEKKLSR 420
             ++  +      L  
Sbjct: 408 EAINTSYPSFFDDLES 423


>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Escherichia coli [TaxId: 562]}
          Length = 427

 Score =  205 bits (521), Expect = 6e-54
 Identities = 77/430 (17%), Positives = 150/430 (34%), Gaps = 18/430 (4%)

Query: 1   MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
           M+ + +    +++GTI + G+K+ S   ++ + L      L N+ D  DV+ ++  L + 
Sbjct: 1   MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTAL 60

Query: 61  GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
           GV     +    + +   +              + +L      +           G   I
Sbjct: 61  GVSYTLSAD-RTRCEIIGNGGPLHAEG------ALELFLGNAGTAMRPLAAALCLGSNDI 113

Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKG-LRGTSYTFP-KVSVGAT 178
            L G   +  RP+   VD+L+  G  I          +  +G   G +      VS    
Sbjct: 114 VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFL 173

Query: 179 QVMMMVASLSHGDTSI---YNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGV-TSLS 234
             ++M A L+  DT I    +   +P +    + + + G +I         ++G  +  S
Sbjct: 174 TALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQS 233

Query: 235 GTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKT---VFKVMRQTGVDIDIIDEG 291
              + +  D   A  +  A A+ GG V +     + ++       V+ + G  I   D+ 
Sbjct: 234 PGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDY 293

Query: 292 IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELV 351
           I           +D+   P         A F         I +      +  F    EL 
Sbjct: 294 ISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELR 353

Query: 352 RLGARISLSGQTARVEGVQGLRGAPVMA-TDLRASVSLVIAALAAQGETEISRVYHLDRG 410
           ++GA +       R+   + L  A +    D R ++   + AL+    T I       + 
Sbjct: 354 KVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVT-ILDPKCTAKT 412

Query: 411 FECLEKKLSR 420
           F    ++L+R
Sbjct: 413 FPDYFEQLAR 422


>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Escherichia coli [TaxId: 562]}
          Length = 216

 Score = 85.9 bits (211), Expect = 6e-18
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 13/211 (6%)

Query: 28  VMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRH 87
           +++A+L   +T  L N+ D  DV+ ++  L + GV     +         +         
Sbjct: 5   LLLAALAHGKT-VLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGA 63

Query: 88  IVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVI 147
           +    G+     +  A+   +G          I L G   +  RP+   VD+L+  G  I
Sbjct: 64  LELFLGNAGTAMRPLAAALCLGS-------NDIVLTGEPRMKERPIGHLVDALRLGGAKI 116

Query: 148 KIDGGYVDARVSSKG--LRGTSYTFPKVSVGATQVMMMVASLSHGDTSIY---NAAREPE 202
                     +  +G    G       VS      ++M A L+  DT I    +   +P 
Sbjct: 117 TYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPY 176

Query: 203 VVDLAHCLNSMGAKISGMGSSTITIQGVTSL 233
           +    + + + G +I         ++G  S 
Sbjct: 177 IDITLNLMKTFGVEIENQHYQQFVVKGGQSY 207


>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus
           [TaxId: 274]}
          Length = 385

 Score = 27.5 bits (60), Expect = 2.1
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 11/149 (7%)

Query: 219 GMGSSTITIQGVTSLSGTRHRILPDRIEAG----TYAMAVAMTGGDVILKMTDSSLLKTV 274
           G+  + I ++G+ +L    H  +P R+E G       +   +   D+ L +         
Sbjct: 37  GLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEASDLFLTVDCGITNHAE 96

Query: 275 FKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISH 334
            + + + GV++ + D       +     P   +       P   +    A +      + 
Sbjct: 97  LRELLENGVEVIVTD------HHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWAL 150

Query: 335 ITETIFENRFMHVQELVRLGARISLSGQT 363
             E +     +   +L  +G    ++   
Sbjct: 151 H-ERLGLPPPLEYADLAAVGTIADVAPLW 178


>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
           {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 388

 Score = 27.5 bits (60), Expect = 2.3
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 33  LLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLT 92
           ++ S       +    D++ +   +  H + ++SD  Y      +      R   I  L 
Sbjct: 164 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVY-----EHFIYDDARHYSIASLD 218

Query: 93  GSYDLV 98
           G ++  
Sbjct: 219 GMFERT 224


>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
           {Synechocystis sp. PCC 6803 [TaxId: 1148]}
          Length = 408

 Score = 27.2 bits (59), Expect = 2.4
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 241 LPDRIEAGT--YAMAVAMTGG-DVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWN 297
           LP + EAGT   A A+A+    D +  +   ++     ++       +  I +      N
Sbjct: 268 LPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPN 327

Query: 298 GEKLRPVDVITAPFPGFPTDLQAQFMAM--MCCAAGISHITETIFENRFMHVQELVRLGA 355
            +      + +    G      A  +    +   +G  H T+ +      H        A
Sbjct: 328 PKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSG-HHCTQPL------HRLFDASGSA 380

Query: 356 RISLS 360
           R SL 
Sbjct: 381 RASLY 385


>d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus
           heterophyllus) [TaxId: 3489]}
          Length = 149

 Score = 27.2 bits (60), Expect = 2.5
 Identities = 11/61 (18%), Positives = 19/61 (31%)

Query: 71  NDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGT 130
               K+    + F    +  ++G     S +     V+  L  +    R   P G   GT
Sbjct: 59  KLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGT 118

Query: 131 R 131
            
Sbjct: 119 Y 119


>d1q20a_ c.37.1.5 (A:) Cholesterol sulfotransferase  sult2b1b {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 294

 Score = 27.2 bits (59), Expect = 2.9
 Identities = 11/62 (17%), Positives = 22/62 (35%)

Query: 290 EGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQE 349
           E I +  N + +R  D+    +P   T    + + ++      S I       R    + 
Sbjct: 30  ESISLAENTQDVRDDDIFIITYPKSGTTWMIEIICLILKEGDPSWIRSVPIWERAPWCET 89

Query: 350 LV 351
           +V
Sbjct: 90  IV 91


>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
           {Bacillus anthracis [TaxId: 1392]}
          Length = 509

 Score = 26.8 bits (59), Expect = 3.4
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 13/39 (33%)

Query: 125 GCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGL 163
              I  RPV+    +L        I  G      ++KGL
Sbjct: 33  NTYILFRPVNKLATNL--------IKSGV-----ATKGL 58


>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 257

 Score = 26.8 bits (58), Expect = 3.6
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 14/130 (10%)

Query: 1   MDRIKIIGGN-KLNGTIA---------ISGAKNASLPVMIASLLTSETLTLENIPD---L 47
           + R   +GGN K+NG  A          + A N+S+ V++A            +     +
Sbjct: 9   LTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 68

Query: 48  ADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWV 107
           A          +   EI S +   D    +    H   RH+   + +      + A    
Sbjct: 69  AAQNCYKVPKGAFTGEI-SPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAG 127

Query: 108 IGPLLAREGY 117
           I  +      
Sbjct: 128 IKVVFCIGEK 137


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
            chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 26.3 bits (57), Expect = 4.5
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 219  GMGSSTITI--QGVTSLSGTRHRILPDRIEAGTYAMAVAMTGGDVILKM---TDSSLLKT 273
            G G   I    Q    L    +    +    G   +  A+   ++IL +   T+  +   
Sbjct: 910  GNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVK 969

Query: 274  VFKVM-RQTGVDIDII---DEGIRVRWNGEKLRPVDVITAP 310
             +  +   TG D   +    E  ++R+   + +P  +I++P
Sbjct: 970  AWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSP 1010


>g1lq8.1 e.1.1.1 (A:,B:) Protein C inhibitor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 358

 Score = 26.3 bits (57), Expect = 5.4
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 385 SVSLVIAALAAQGET--EISRVYHLDRGFECLEKKLSRCGALIQRIK 429
           S+SL + +L A   T  +I     L+      ++       L+Q + 
Sbjct: 29  SMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELN 75


>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 381

 Score = 26.0 bits (56), Expect = 5.5
 Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 385 SVSLVIAALAAQGET--EISRVYHLDRGFECLEKKLSRCGALIQRIK 429
           S ++ +  + ++G T  ++++V   +      +K  S   +L   I 
Sbjct: 35  SSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAADKIHSSFRSLSSAIN 81


>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 203

 Score = 25.9 bits (56), Expect = 6.4
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 3/57 (5%)

Query: 281 TGVDIDIIDEG---IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISH 334
           T +D+ + D G   I V  NG  +   +          + +Q           G   
Sbjct: 24  TNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRG 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,544,096
Number of extensions: 71525
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 18
Length of query: 430
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,199,356
Effective search space: 410179752
Effective search space used: 410179752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)