RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] (430 letters) >d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Length = 419 Score = 321 bits (823), Expect = 8e-89 Identities = 196/430 (45%), Positives = 274/430 (63%), Gaps = 12/430 (2%) Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60 MD+ ++ G +L G + ISGAKNA+LP++ A+LL E + ++N+P L D+ +++L Sbjct: 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQL 60 Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120 G ++ ++ ++ + + YDLV MRAS W +GPL+AR G ++ Sbjct: 61 GTKV-----------ERDGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQV 109 Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180 SLPGGCAIG RPVDL + L+ LG IK++ GYV A V+ L+G KVSVGAT Sbjct: 110 SLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVN-GRLKGAHIVMDKVSVGATVT 168 Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 +M A+L+ G T I NAAREPE+VD A+ L ++GAKISG G+ ITI+GV L G +R+ Sbjct: 169 IMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRV 228 Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300 LPDRIE GT+ +A A++GG ++ + L V +R+ G DI+ ++ I + +G++ Sbjct: 229 LPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKR 288 Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360 + V V TAP P FPTD+QAQF + A G ITETIFENRFMHV EL+R+GA + Sbjct: 289 PKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIE 348 Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420 T GV+ L GA VMATDLRAS SLV+A A+G T + R+YH+DRG+E +E KL Sbjct: 349 SNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRA 408 Query: 421 CGALIQRIKG 430 GA I+R+KG Sbjct: 409 LGANIERVKG 418 >d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Length = 427 Score = 208 bits (530), Expect = 7e-55 Identities = 80/436 (18%), Positives = 151/436 (34%), Gaps = 32/436 (7%) Query: 4 IKI-IGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGV 62 +K+ L+G I + G K+ S +I L + +I DV +++ R GV Sbjct: 1 MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGV 60 Query: 63 EILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREG-YARIS 121 EI + + + + L + ++ + + G + Sbjct: 61 EI----------EDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVE 110 Query: 122 LPGGCAIGTRPVDLFVDSLKSLGVVIKID---GGYVDARVSSKGLRGTSYTFPKVSVGAT 178 + G ++ RP+D LK +GV I +K LR Y P S Sbjct: 111 MFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVK 170 Query: 179 QVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRH 238 +M A + G++ I +E L G +S IT+QG L+G + Sbjct: 171 SALMFAALQAKGESVIIE--KEYTRNHTEDMLQQFGGHLSVD-GKKITVQGPQKLTGQKV 227 Query: 239 RILPDRIEAGTYAMAVAMTGG------DVILKMTDSSLLKTVFKV-MRQTGVDIDIIDEG 291 + D A + +A + +V + T + ++ + + + +ID + + Sbjct: 228 VVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKS 287 Query: 292 IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAM-----MCCAAGISHITETIFENRFMH 346 + L+ ++ A P +L + + + + + Sbjct: 288 ATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVV 347 Query: 347 VQELVRLGARISLSGQTARVEGVQGLRGAPVMAT-DLRASVSLVIAAL-AAQGETEISRV 404 L +GA I+ + ++G L GA V D R + IAAL A GE E+ R Sbjct: 348 ADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRA 407 Query: 405 YHLDRGFECLEKKLSR 420 ++ + L Sbjct: 408 EAINTSYPSFFDDLES 423 >d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 427 Score = 205 bits (521), Expect = 6e-54 Identities = 77/430 (17%), Positives = 150/430 (34%), Gaps = 18/430 (4%) Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60 M+ + + +++GTI + G+K+ S ++ + L L N+ D DV+ ++ L + Sbjct: 1 MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTAL 60 Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120 GV + + + + + +L + G I Sbjct: 61 GVSYTLSAD-RTRCEIIGNGGPLHAEG------ALELFLGNAGTAMRPLAAALCLGSNDI 113 Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKG-LRGTSYTFP-KVSVGAT 178 L G + RP+ VD+L+ G I + +G G + VS Sbjct: 114 VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFL 173 Query: 179 QVMMMVASLSHGDTSI---YNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGV-TSLS 234 ++M A L+ DT I + +P + + + + G +I ++G + S Sbjct: 174 TALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQS 233 Query: 235 GTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKT---VFKVMRQTGVDIDIIDEG 291 + + D A + A A+ GG V + + ++ V+ + G I D+ Sbjct: 234 PGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDY 293 Query: 292 IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELV 351 I +D+ P A F I + + F EL Sbjct: 294 ISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELR 353 Query: 352 RLGARISLSGQTARVEGVQGLRGAPVMA-TDLRASVSLVIAALAAQGETEISRVYHLDRG 410 ++GA + R+ + L A + D R ++ + AL+ T I + Sbjct: 354 KVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVT-ILDPKCTAKT 412 Query: 411 FECLEKKLSR 420 F ++L+R Sbjct: 413 FPDYFEQLAR 422 >d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 216 Score = 85.9 bits (211), Expect = 6e-18 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 13/211 (6%) Query: 28 VMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRH 87 +++A+L +T L N+ D DV+ ++ L + GV + + Sbjct: 5 LLLAALAHGKT-VLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGA 63 Query: 88 IVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVI 147 + G+ + A+ +G I L G + RP+ VD+L+ G I Sbjct: 64 LELFLGNAGTAMRPLAAALCLGS-------NDIVLTGEPRMKERPIGHLVDALRLGGAKI 116 Query: 148 KIDGGYVDARVSSKG--LRGTSYTFPKVSVGATQVMMMVASLSHGDTSIY---NAAREPE 202 + +G G VS ++M A L+ DT I + +P Sbjct: 117 TYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPY 176 Query: 203 VVDLAHCLNSMGAKISGMGSSTITIQGVTSL 233 + + + + G +I ++G S Sbjct: 177 IDITLNLMKTFGVEIENQHYQQFVVKGGQSY 207 >d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} Length = 385 Score = 27.5 bits (60), Expect = 2.1 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 11/149 (7%) Query: 219 GMGSSTITIQGVTSLSGTRHRILPDRIEAG----TYAMAVAMTGGDVILKMTDSSLLKTV 274 G+ + I ++G+ +L H +P R+E G + + D+ L + Sbjct: 37 GLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEASDLFLTVDCGITNHAE 96 Query: 275 FKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISH 334 + + + GV++ + D + P + P + A + + Sbjct: 97 LRELLENGVEVIVTD------HHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWAL 150 Query: 335 ITETIFENRFMHVQELVRLGARISLSGQT 363 E + + +L +G ++ Sbjct: 151 H-ERLGLPPPLEYADLAAVGTIADVAPLW 178 >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 Score = 27.5 bits (60), Expect = 2.3 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 33 LLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLT 92 ++ S + D++ + + H + ++SD Y + R I L Sbjct: 164 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVY-----EHFIYDDARHYSIASLD 218 Query: 93 GSYDLV 98 G ++ Sbjct: 219 GMFERT 224 >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 Score = 27.2 bits (59), Expect = 2.4 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 12/125 (9%) Query: 241 LPDRIEAGT--YAMAVAMTGG-DVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWN 297 LP + EAGT A A+A+ D + + ++ ++ + I + N Sbjct: 268 LPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPN 327 Query: 298 GEKLRPVDVITAPFPGFPTDLQAQFMAM--MCCAAGISHITETIFENRFMHVQELVRLGA 355 + + + G A + + +G H T+ + H A Sbjct: 328 PKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSG-HHCTQPL------HRLFDASGSA 380 Query: 356 RISLS 360 R SL Sbjct: 381 RASLY 385 >d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} Length = 149 Score = 27.2 bits (60), Expect = 2.5 Identities = 11/61 (18%), Positives = 19/61 (31%) Query: 71 NDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGT 130 K+ + F + ++G S + V+ L + R P G GT Sbjct: 59 KLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGT 118 Query: 131 R 131 Sbjct: 119 Y 119 >d1q20a_ c.37.1.5 (A:) Cholesterol sulfotransferase sult2b1b {Human (Homo sapiens) [TaxId: 9606]} Length = 294 Score = 27.2 bits (59), Expect = 2.9 Identities = 11/62 (17%), Positives = 22/62 (35%) Query: 290 EGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQE 349 E I + N + +R D+ +P T + + ++ S I R + Sbjct: 30 ESISLAENTQDVRDDDIFIITYPKSGTTWMIEIICLILKEGDPSWIRSVPIWERAPWCET 89 Query: 350 LV 351 +V Sbjct: 90 IV 91 >d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor) {Bacillus anthracis [TaxId: 1392]} Length = 509 Score = 26.8 bits (59), Expect = 3.4 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 13/39 (33%) Query: 125 GCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGL 163 I RPV+ +L I G ++KGL Sbjct: 33 NTYILFRPVNKLATNL--------IKSGV-----ATKGL 58 >d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 257 Score = 26.8 bits (58), Expect = 3.6 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 14/130 (10%) Query: 1 MDRIKIIGGN-KLNGTIA---------ISGAKNASLPVMIASLLTSETLTLENIPD---L 47 + R +GGN K+NG A + A N+S+ V++A + + Sbjct: 9 LTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 68 Query: 48 ADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWV 107 A + EI S + D + H RH+ + + + A Sbjct: 69 AAQNCYKVPKGAFTGEI-SPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAG 127 Query: 108 IGPLLAREGY 117 I + Sbjct: 128 IKVVFCIGEK 137 >d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]} Length = 1074 Score = 26.3 bits (57), Expect = 4.5 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 219 GMGSSTITI--QGVTSLSGTRHRILPDRIEAGTYAMAVAMTGGDVILKM---TDSSLLKT 273 G G I Q L + + G + A+ ++IL + T+ + Sbjct: 910 GNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVK 969 Query: 274 VFKVM-RQTGVDIDII---DEGIRVRWNGEKLRPVDVITAP 310 + + TG D + E ++R+ + +P +I++P Sbjct: 970 AWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSP 1010 >g1lq8.1 e.1.1.1 (A:,B:) Protein C inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 358 Score = 26.3 bits (57), Expect = 5.4 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 385 SVSLVIAALAAQGET--EISRVYHLDRGFECLEKKLSRCGALIQRIK 429 S+SL + +L A T +I L+ ++ L+Q + Sbjct: 29 SMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELN 75 >d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 381 Score = 26.0 bits (56), Expect = 5.5 Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 385 SVSLVIAALAAQGET--EISRVYHLDRGFECLEKKLSRCGALIQRIK 429 S ++ + + ++G T ++++V + +K S +L I Sbjct: 35 SSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAADKIHSSFRSLSSAIN 81 >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Score = 25.9 bits (56), Expect = 6.4 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 3/57 (5%) Query: 281 TGVDIDIIDEG---IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISH 334 T +D+ + D G I V NG + + + +Q G Sbjct: 24 TNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRG 80 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.136 0.387 Gapped Lambda K H 0.267 0.0477 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,544,096 Number of extensions: 71525 Number of successful extensions: 273 Number of sequences better than 10.0: 1 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 18 Length of query: 430 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 342 Effective length of database: 1,199,356 Effective search space: 410179752 Effective search space used: 410179752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.2 bits)