HHsearch alignment for GI: 254780928 and conserved domain: COG0016

>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis].
Probab=98.14  E-value=3.4e-05  Score=52.88  Aligned_cols=144  Identities=22%  Similarity=0.336  Sum_probs=89.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHH-HHHCCCCCCCCCCCC---EEEEECCCCCEEE
Q ss_conf             710379987658866899999999999999998598480165202288-752026755433322---1689869998899
Q gi|254780928|r    7 LRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSD-SLGKFLPDEDRPNKG---VFSLQDDDGQWIS   82 (496)
Q Consensus         7 ~~~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~-~~~~~~~~~~~~~k~---~y~f~D~~g~~l~   82 (496)
T Consensus        96 ~dv~lp-~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~-~~l  172 (335)
T COG0016          96 IDVTLP-GR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDRE-KLL  172 (335)
T ss_pred             CCCCCC-CC-CCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCC-CEE
T ss_conf             775788-86-677898670899999999999974966645882132022524324999998412444378768877-300


Q ss_pred             ECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             9888838999999951120554112331013330258764442111110001210000245788999999999751
Q gi|254780928|r   83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAV  158 (496)
Q Consensus        83 LRpDlT~~~aR~~~~~~~~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~~l  158 (496)
T Consensus       173 LRTHTs~vq~R~l~~~~~---~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~--~Lkg~L~~f~~~~  243 (335)
T COG0016         173 LRTHTSPVQARTLAENAK---IPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFA--DLKGTLEEFAKKF  243 (335)
T ss_pred             ECCCCCHHHHHHHHHCCC---CCCEEECCCCEECCCCCCCCCCHHEEEEEEEEEECCCCHH--HHHHHHHHHHHHH
T ss_conf             236682765999984799---9915845663411788776426101336789995895699--9999999999996