HHsearch alignment for GI: 254780928 and conserved domain: COG0124
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=748.66 Aligned_cols=425 Identities=36% Similarity=0.599 Sum_probs=363.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCC-CCCCCCCEEEEECCCCCEEEEC
Q ss_conf 871037998765886689999999999999999859848016520228875202675-5433322168986999889998
Q gi|254780928|r 6 KLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPD-EDRPNKGVFSLQDDDGQWISLR 84 (496)
Q Consensus 6 ~~~~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~-~~~~~k~~y~f~D~~g~~l~LR 84 (496)
T Consensus 1 ~~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLR 80 (429)
T COG0124 1 MMKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALR 80 (429)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEC
T ss_conf 98766899866558677899999999999999980997655755111667620169743333210289994899889844
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88838999999951120554112331013330258764442111110001210000245788999999999751888777
Q gi|254780928|r 85 YDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRND 164 (496)
Q Consensus 85 pDlT~~~aR~~~~~~~~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~~lgl~~~~ 164 (496)
T Consensus 81 pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~--~ 158 (429)
T COG0124 81 PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIG--G 158 (429)
T ss_pred CCCCHHHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHCCCC--C
T ss_conf 66749999999956220368725998335623788888875036876767767998653899999999999974998--6
Q ss_pred CEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 11303660558999998325603564334555333220012896789986210165003555304899977899888740
Q gi|254780928|r 165 YHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFL 244 (496)
Q Consensus 165 ~~I~in~~~il~~il~~lgi~~~~~~~~~~~~~~~idkl~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (496)
T Consensus 159 ~~l~iN~~g~l~~~~~~~gi------~~~~~l~~~ldk~~k~----~~~~L~e~~~~r~------------~~n~lr~ld 216 (429)
T COG0124 159 FTLEINSRGILEGRLEYLGI------DQREALLRYLDKLDKI----GKLELDEDSKRRL------------KTNPLRVLD 216 (429)
T ss_pred EEEEECCCCCHHHHHHHHCC------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH------------HHCHHHHHH
T ss_conf 79998176447888775061------1689999997465467----8987606655343------------114489998
Q ss_pred CCC--CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 478--568899899860357325888999999999987508884430011010012212341248998546667767666
Q gi|254780928|r 245 SID--LEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCVYEAILGFPVMNEKQKP 322 (496)
Q Consensus 245 ~~~--~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRgLdYYTG~vFE~~~~~~~~~~~~~~ 322 (496)
T Consensus 217 ~k~~~~~~~~~~ap~i~~~~~~--e~~~~~~~v~~~L~~~g~---~~~id~~lvRGLDYYtg~VFE~~~~~--------~ 283 (429)
T COG0124 217 SKKDSDQELLKNAPELLDYLDE--ESLEHLEELLALLDALGI---SYEIDPSLVRGLDYYTGTVFEAVTDG--------L 283 (429)
T ss_pred HCCCHHHHHHHCCHHHHHHCCH--HHHHHHHHHHHHHHHCCC---CEEECCCEECCHHHCCCEEEEEEECC--------C
T ss_conf 6163289998520776401128--899999999999998399---77986630036132066689999768--------8
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 31011003232355211123456774213311016899999736877665557714899826976899999999999998
Q gi|254780928|r 323 VVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRT 402 (496)
Q Consensus 323 ~~~~aI~~GGRYD~L~~~f~~~~~pavGfaigverl~~~l~~~~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~ia~~Lr~ 402 (496)
T Consensus 284 ~~~~sI~gGGRYD~Lv~~~gG~~~pavGFaiGveRl~~~l~~~~~-~~~~~~~~~v~v~~~~~~~--~~~a~~la~~LR~ 360 (429)
T COG0124 284 GAQGSVCGGGRYDGLVEEFGGKPTPAVGFAIGVERLILALEEEGK-EDPVETRVDVYVVPLGEDA--EPEALKLAQKLRA 360 (429)
T ss_pred CCCCCEECCCCCHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCHH--HHHHHHHHHHHHH
T ss_conf 644315527661589998489988713675179999999997188-7776777888999848615--9999999999997
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHHHH
Q ss_conf 79839997189999889999998779989999887287488189978788836433112014432023351030799999
Q gi|254780928|r 403 AGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELV 482 (496)
Q Consensus 403 ~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~l~ 482 (496)
T Consensus 361 ~g~~~~~~~~-~r~~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~eq------------------~~v~~~~~~ 421 (429)
T COG0124 361 AGISVEVDYS-GRKLKKQFKYADKLGARFAVILGEDELANGVVTVKDLATGEQ------------------EEVPLDELV 421 (429)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHCCCCEEEEECCHHHHCCCEEEEECCCCCC------------------CEECHHHHH
T ss_conf 5994899855-656899999998779988999852588659789734777863------------------334499999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780928|r 483 STVKKIL 489 (496)
Q Consensus 483 ~~~~~~l 489 (496)
T Consensus 422 ~~~~~~~ 428 (429)
T COG0124 422 EELKELL 428 (429)
T ss_pred HHHHHHC
T ss_conf 9987423