HHsearch alignment for GI: 254780928 and conserved domain: COG0423
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=99.88 E-value=1.7e-20 Score=152.26 Aligned_cols=400 Identities=17% Similarity=0.223 Sum_probs=215.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCEEEECCCHHHHHHHHCCCCCC---CC-----CC--------------
Q ss_conf 9987658866899999999999999998--598480165202288752026755---43-----33--------------
Q gi|254780928|r 12 PRGFADCPTKEIRIRNRILDSIRNIYEN--YGFDPIETPLLEYSDSLGKFLPDE---DR-----PN-------------- 67 (496)
Q Consensus 12 P~G~~D~~p~~~~~~~~i~~~l~~~f~~--~G~~~I~tP~lE~~~~~~~~~~~~---~~-----~~-------------- 67 (496)
T Consensus 29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l 108 (558)
T COG0423 29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVECKKCGERYRADHLIEEYL 108 (558)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 34653257751899999999999986624687678425544868886434761346562043462453453368889876
Q ss_pred -------------------------------------CCEEEEE-C-CCCCEEEECCCCH----HHHHHHHHHHHHHCCC
Q ss_conf -------------------------------------2216898-6-9998899988883----8999999951120554
Q gi|254780928|r 68 -------------------------------------KGVFSLQ-D-DDGQWISLRYDLT----APLARYVAENFDTIVF 104 (496)
Q Consensus 68 -------------------------------------k~~y~f~-D-~~g~~l~LRpDlT----~~~aR~~~~~~~~~~~ 104 (496)
T Consensus 109 ~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~--r~kl 186 (558)
T COG0423 109 GKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFA--RNKL 186 (558)
T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHH--CCCC
T ss_conf 41034557878888888861775887688668750344666731457788632456510021215369999975--3689
Q ss_pred CHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCCCH--------HHHHHHHHHHHHHHHHCC-----CCCCCCEEE
Q ss_conf 11233101333025-87644--421111100012100002--------457889999999997518-----887771130
Q gi|254780928|r 105 PCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSSAE--------TADAEMCMMMADTLEAVG-----IKRNDYHIG 168 (496)
Q Consensus 105 p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~~~--------~~DaEii~l~~~~l~~lg-----l~~~~~~I~ 168 (496)
T Consensus 187 PFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~-~~l~l~~~~~q~~~~~~EAv~~g---~~ 262 (558)
T COG0423 187 PFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKD-EKLPLLPREAQEEGTEEEAVEEG---IV 262 (558)
T ss_pred CEEEEEECHHHCCCCCCCCCEEEHHHHHHHEEEEEECCCCCCCCCHHHHHH-HHCCCCCHHHHHHHHHHHHHHCC---EE
T ss_conf 848886231014652766536651234312013588777556863333321-00246647776410034554415---45
Q ss_pred CC-----CCHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHH------CCCCCHHHHHHHHHHCCCCHHHHHHCCCCC
Q ss_conf 36-----60558999998325603564334555-----333220------012896789986210165003555304899
Q gi|254780928|r 169 IN-----NRKILDGILEKIGLHGDDKLNERLIV-----LRAIDK------LDKFGLQGVKLLLGEGRTDNSGDFTKGANL 232 (496)
Q Consensus 169 in-----~~~il~~il~~lgi~~~~~~~~~~~~-----~~~idk------l~k~~~~~~~~~l~~~~~~~~~~~~~~~~~ 232 (496)
T Consensus 263 ~n~~~~y~~~~~~~fl~~lGI~~e~l-Rfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYD----L~~H~k~ 337 (558)
T COG0423 263 ENETLAYFIARTKFFLEDLGIDPEKL-RFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYD----LSRHSKF 337 (558)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHH-HHHHCCHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCC----HHHHHHH
T ss_conf 04438999999999999809998980-665239087766544023279963788669999861355445----5656540
Q ss_pred CHHHHHHHHH----------HHCCC----CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
Q ss_conf 9778998887----------40478----568899899860357325888999999999987508884430011010012
Q gi|254780928|r 233 TSEQIDIMVS----------FLSID----LEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRG 298 (496)
Q Consensus 233 ~~~~~~~~~~----------~~~~~----~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRg 298 (496)
T Consensus 338 s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~-------~~~se~~~~~~~~-------~~~~~~~~~--- 400 (558)
T COG0423 338 SGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVA-------EALSELEELEKEL-------NGYEVSKDL--- 400 (558)
T ss_pred CCCCCEEEECCCCCCEEEEEECCCCHHHCCHHHHHHHHHHH-------HHHHHHHHHHHCC-------CCCCCCCCH---
T ss_conf 36662233214776223310014662103814455667776-------5445666665304-------762135310---
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC-CEEEECCHHHHHHHHHCCC----------
Q ss_conf 21234124899854666776766631011003232355211123456774-2133110168999997368----------
Q gi|254780928|r 299 LEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPA-TGFSIGISRLIVALKSLES---------- 367 (496)
Q Consensus 299 LdYYTG~vFE~~~~~~~~~~~~~~~~~~aI~~GGRYD~L~~~f~~~~~pa-vGfaigverl~~~l~~~~~---------- 367 (496)
T Consensus 401 ------~~i~~~----------~------~~~~e~~-----------iP~VIEPSfGidRi~y~~l~~ay~~ee~~e~R~ 447 (558)
T COG0423 401 ------VIIEEV----------E------KVTGEKY-----------IPHVIEPSFGIDRIFYALLEHAYTEEEVEEKRI 447 (558)
T ss_pred ------HHHEEE----------E------ECCCCEE-----------CCCEECCCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf ------010011----------0------0247550-----------671565677711899999987620113566505
Q ss_pred --CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCE
Q ss_conf --776655577148998269768999999999999987983999718999988999999877998999988728748818
Q gi|254780928|r 368 --STNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGML 445 (496)
Q Consensus 368 --~~~~~~~~~~v~V~~~~~~~~~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v 445 (496)
T Consensus 448 vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yD-dsG-sIGrRYrR~DEIGtPfcVTvD~eTleD~tV 525 (558)
T COG0423 448 VLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYD-DSG-SIGRRYRRQDEIGTPFCVTVDFETLEDNTV 525 (558)
T ss_pred EEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEC-CCC-CHHHHHHHCCCCCCCEEEEECCCCCCCCCE
T ss_conf 995586558527999960224214689999999998539669862-888-376655533445896189954775667847
Q ss_pred EEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHH
Q ss_conf 99787888364331120144320233510307999999999999864
Q gi|254780928|r 446 QIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQEN 492 (496)
Q Consensus 446 ~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~l~~~~~~~l~~~ 492 (496)
T Consensus 526 TiReRDs~------------------~QvRv~i~el~~~l~~~~~~~ 554 (558)
T COG0423 526 TIRERDSM------------------EQVRVKIEELADYLRELIKGG 554 (558)
T ss_pred EEEECCCH------------------HEEEEEHHHHHHHHHHHHCCC
T ss_conf 98625761------------------204545999999999984256