HHsearch alignment for GI: 254780928 and conserved domain: COG0423

>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=99.88  E-value=1.7e-20  Score=152.26  Aligned_cols=400  Identities=17%  Similarity=0.223  Sum_probs=215.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCEEEECCCHHHHHHHHCCCCCC---CC-----CC--------------
Q ss_conf             9987658866899999999999999998--598480165202288752026755---43-----33--------------
Q gi|254780928|r   12 PRGFADCPTKEIRIRNRILDSIRNIYEN--YGFDPIETPLLEYSDSLGKFLPDE---DR-----PN--------------   67 (496)
Q Consensus        12 P~G~~D~~p~~~~~~~~i~~~l~~~f~~--~G~~~I~tP~lE~~~~~~~~~~~~---~~-----~~--------------   67 (496)
T Consensus        29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l  108 (558)
T COG0423          29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVECKKCGERYRADHLIEEYL  108 (558)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             34653257751899999999999986624687678425544868886434761346562043462453453368889876


Q ss_pred             -------------------------------------CCEEEEE-C-CCCCEEEECCCCH----HHHHHHHHHHHHHCCC
Q ss_conf             -------------------------------------2216898-6-9998899988883----8999999951120554
Q gi|254780928|r   68 -------------------------------------KGVFSLQ-D-DDGQWISLRYDLT----APLARYVAENFDTIVF  104 (496)
Q Consensus        68 -------------------------------------k~~y~f~-D-~~g~~l~LRpDlT----~~~aR~~~~~~~~~~~  104 (496)
T Consensus       109 ~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~--r~kl  186 (558)
T COG0423         109 GKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFA--RNKL  186 (558)
T ss_pred             HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHH--CCCC
T ss_conf             41034557878888888861775887688668750344666731457788632456510021215369999975--3689


Q ss_pred             CHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCCCH--------HHHHHHHHHHHHHHHHCC-----CCCCCCEEE
Q ss_conf             11233101333025-87644--421111100012100002--------457889999999997518-----887771130
Q gi|254780928|r  105 PCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSSAE--------TADAEMCMMMADTLEAVG-----IKRNDYHIG  168 (496)
Q Consensus       105 p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~~~--------~~DaEii~l~~~~l~~lg-----l~~~~~~I~  168 (496)
T Consensus       187 PFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~-~~l~l~~~~~q~~~~~~EAv~~g---~~  262 (558)
T COG0423         187 PFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKD-EKLPLLPREAQEEGTEEEAVEEG---IV  262 (558)
T ss_pred             CEEEEEECHHHCCCCCCCCCEEEHHHHHHHEEEEEECCCCCCCCCHHHHHH-HHCCCCCHHHHHHHHHHHHHHCC---EE
T ss_conf             848886231014652766536651234312013588777556863333321-00246647776410034554415---45


Q ss_pred             CC-----CCHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHH------CCCCCHHHHHHHHHHCCCCHHHHHHCCCCC
Q ss_conf             36-----60558999998325603564334555-----333220------012896789986210165003555304899
Q gi|254780928|r  169 IN-----NRKILDGILEKIGLHGDDKLNERLIV-----LRAIDK------LDKFGLQGVKLLLGEGRTDNSGDFTKGANL  232 (496)
Q Consensus       169 in-----~~~il~~il~~lgi~~~~~~~~~~~~-----~~~idk------l~k~~~~~~~~~l~~~~~~~~~~~~~~~~~  232 (496)
T Consensus       263 ~n~~~~y~~~~~~~fl~~lGI~~e~l-Rfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYD----L~~H~k~  337 (558)
T COG0423         263 ENETLAYFIARTKFFLEDLGIDPEKL-RFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYD----LSRHSKF  337 (558)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHH-HHHHCCHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCC----HHHHHHH
T ss_conf             04438999999999999809998980-665239087766544023279963788669999861355445----5656540


Q ss_pred             CHHHHHHHHH----------HHCCC----CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
Q ss_conf             9778998887----------40478----568899899860357325888999999999987508884430011010012
Q gi|254780928|r  233 TSEQIDIMVS----------FLSID----LEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRG  298 (496)
Q Consensus       233 ~~~~~~~~~~----------~~~~~----~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRg  298 (496)
T Consensus       338 s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~-------~~~se~~~~~~~~-------~~~~~~~~~---  400 (558)
T COG0423         338 SGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVA-------EALSELEELEKEL-------NGYEVSKDL---  400 (558)
T ss_pred             CCCCCEEEECCCCCCEEEEEECCCCHHHCCHHHHHHHHHHH-------HHHHHHHHHHHCC-------CCCCCCCCH---
T ss_conf             36662233214776223310014662103814455667776-------5445666665304-------762135310---


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC-CEEEECCHHHHHHHHHCCC----------
Q ss_conf             21234124899854666776766631011003232355211123456774-2133110168999997368----------
Q gi|254780928|r  299 LEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPA-TGFSIGISRLIVALKSLES----------  367 (496)
Q Consensus       299 LdYYTG~vFE~~~~~~~~~~~~~~~~~~aI~~GGRYD~L~~~f~~~~~pa-vGfaigverl~~~l~~~~~----------  367 (496)
T Consensus       401 ------~~i~~~----------~------~~~~e~~-----------iP~VIEPSfGidRi~y~~l~~ay~~ee~~e~R~  447 (558)
T COG0423         401 ------VIIEEV----------E------KVTGEKY-----------IPHVIEPSFGIDRIFYALLEHAYTEEEVEEKRI  447 (558)
T ss_pred             ------HHHEEE----------E------ECCCCEE-----------CCCEECCCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             ------010011----------0------0247550-----------671565677711899999987620113566505


Q ss_pred             --CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCE
Q ss_conf             --776655577148998269768999999999999987983999718999988999999877998999988728748818
Q gi|254780928|r  368 --STNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGML  445 (496)
Q Consensus       368 --~~~~~~~~~~v~V~~~~~~~~~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v  445 (496)
T Consensus       448 vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yD-dsG-sIGrRYrR~DEIGtPfcVTvD~eTleD~tV  525 (558)
T COG0423         448 VLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYD-DSG-SIGRRYRRQDEIGTPFCVTVDFETLEDNTV  525 (558)
T ss_pred             EEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEC-CCC-CHHHHHHHCCCCCCCEEEEECCCCCCCCCE
T ss_conf             995586558527999960224214689999999998539669862-888-376655533445896189954775667847


Q ss_pred             EEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHH
Q ss_conf             99787888364331120144320233510307999999999999864
Q gi|254780928|r  446 QIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQEN  492 (496)
Q Consensus       446 ~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~l~~~~~~~l~~~  492 (496)
T Consensus       526 TiReRDs~------------------~QvRv~i~el~~~l~~~~~~~  554 (558)
T COG0423         526 TIRERDSM------------------EQVRVKIEELADYLRELIKGG  554 (558)
T ss_pred             EEEECCCH------------------HEEEEEHHHHHHHHHHHHCCC
T ss_conf             98625761------------------204545999999999984256