HHsearch alignment for GI: 254780928 and conserved domain: COG2269
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=98.26 E-value=8.8e-05 Score=50.22 Aligned_cols=141 Identities=20% Similarity=0.241 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCC---CCEEEECCCCHHHHHHHHH
Q ss_conf 6689999999999999999859848016520228875202675543332216898699---9889998888389999999
Q gi|254780928|r 20 TKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDD---GQWISLRYDLTAPLARYVA 96 (496)
Q Consensus 20 p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~---g~~l~LRpDlT~~~aR~~~ 96 (496)
T Consensus 13 ~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~------a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLA 86 (322)
T COG2269 13 IDNLLKRAAIIAAIRRFFAERGVLEVETPALSV------APVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLA 86 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHC------CCCCCCCEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 899998999999999999876925853367650------78986423445667654676665303665680777899997
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC-----CCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 51120554112331013330258764442111-----1100012100002457889999999997518887771130366
Q gi|254780928|r 97 ENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQF-----IQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINN 171 (496)
Q Consensus 97 ~~~~~~~~p~k~yy~g~vfR~e~p~~Gr~REf-----~Q~g~eiiG~~~~~~DaEii~l~~~~l~~lgl~~~~~~I~in~ 171 (496)
T Consensus 87 ag~------~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~---lm~--e~~~Ll~~vl~~~~~E---------~ 146 (322)
T COG2269 87 AGS------GPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYR---LMN--EVDDLLQLVLECVEAE---------R 146 (322)
T ss_pred CCC------CCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHH---HHH--HHHHHHHHHHHCCCCC---------E
T ss_conf 548------8601454777263325667984367651006785999---999--9999999997037853---------5
Q ss_pred CHHHHHHHHHHCCCH
Q ss_conf 055899999832560
Q gi|254780928|r 172 RKILDGILEKIGLHG 186 (496)
Q Consensus 172 ~~il~~il~~lgi~~ 186 (496)
T Consensus 147 ls~~eaF~r~~gid~ 161 (322)
T COG2269 147 LSYQEAFLRYLGIDP 161 (322)
T ss_pred EEHHHHHHHHHCCCC
T ss_conf 559999999838894