HHsearch alignment for GI: 254780928 and conserved domain: PRK00037
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=679.19 Aligned_cols=402 Identities=36% Similarity=0.566 Sum_probs=321.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCC-CCCCCCCEEEEECCCCCEEEEC
Q ss_conf 871037998765886689999999999999999859848016520228875202675-5433322168986999889998
Q gi|254780928|r 6 KLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPD-EDRPNKGVFSLQDDDGQWISLR 84 (496)
Q Consensus 6 ~~~~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~-~~~~~k~~y~f~D~~g~~l~LR 84 (496)
T Consensus 1 ~~~~~~p~G~rD~lP~~~~~~~~i~~~i~~~~~~~Gy~~I~tP~lE~~d~~~~~~g~~~d~~~k~~y~f~D~~g~~l~LR 80 (417)
T PRK00037 1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKIGESTDIVEKEMYTFQDKGGRSLTLR 80 (417)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHEEEEECCCCCEEEEC
T ss_conf 99998999877679889999999999999999985995857752150988624577632201332056775999889856
Q ss_pred CCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8883899999995112--05541123310133302587644421111100012100002457889999999997518887
Q gi|254780928|r 85 YDLTAPLARYVAENFD--TIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKR 162 (496)
Q Consensus 85 pDlT~~~aR~~~~~~~--~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~~lgl~~ 162 (496)
T Consensus 81 pD~T~~iaR~~~~~~~~~~~~~P~r~~y~g~vfR~e~p~~GR~REf~Q~g~eiiG~~~~~aDaEvi~l~~~~l~~lGl~- 159 (417)
T PRK00037 81 PEGTAPVVRAVIENKLYNELPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPAADAEVIALAADLLKALGLK- 159 (417)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCCCCCCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 7767299999997210106887658998724660478988763524563527746641788899999999999983996-
Q ss_pred CCCEEECCCCH----------HHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCC
Q ss_conf 77113036605----------5899999832560--35643345553332200128967899862101650035553048
Q gi|254780928|r 163 NDYHIGINNRK----------ILDGILEKIGLHG--DDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGA 230 (496)
Q Consensus 163 ~~~~I~in~~~----------il~~il~~lgi~~--~~~~~~~~~~~~~idkl~k~~~~~~~~~l~~~~~~~~~~~~~~~ 230 (496)
T Consensus 160 -~~~i~i~~~g~~~~~~~~r~~L~~~l~~~~~~l~~~~~~~~~~~~l~~ld~~~~------------------------- 213 (417)
T PRK00037 160 -GLVLLLNSLGDFEIRANYRKALVGYLEKHLDELDEDSKRRLETNPLRILDKKDK------------------------- 213 (417)
T ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCH-------------------------
T ss_conf -520010567768889999999999999976433878877665427787642388-------------------------
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEE
Q ss_conf 99977899888740478568899899860357325888999999999987508884430011010012212341248998
Q gi|254780928|r 231 NLTSEQIDIMVSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCVYEAI 310 (496)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRgLdYYTG~vFE~~ 310 (496)
T Consensus 214 ----------------~~~~~~~~a~~l~~--~l~~~~~~~l~~l~~~l~~~~~---~~~~Dl~lvRgldYYTG~vFe~~ 272 (417)
T PRK00037 214 ----------------EDQEILADAPKLLD--YLDEESKAHFEELKELLDALGI---PYVIDPRLVRGLDYYTGTVFEFV 272 (417)
T ss_pred ----------------HHHHHHHHCHHHHH--HHCHHHHHHHHHHHHHHHHCCC---CEEECHHHCCCCCCCCCEEEEEE
T ss_conf ----------------79999973625453--3277889999999999997599---69986245057665343389999
Q ss_pred ECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHH
Q ss_conf 54666776766631011003232355211123456774213311016899999736877665557714899826976899
Q gi|254780928|r 311 LGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVLITTMDHDSDSL 390 (496)
Q Consensus 311 ~~~~~~~~~~~~~~~~aI~~GGRYD~L~~~f~~~~~pavGfaigverl~~~l~~~~~~~~~~~~~~~v~V~~~~~~~~~~ 390 (496)
T Consensus 273 ~~--------~~~~~~si~gGGRYD~L~~~fgg~~~PAvGfa~gieRi~~~l~~~~~------~~~~v~v~~~--~~~~~ 336 (417)
T PRK00037 273 TD--------GLGAQGTVCGGGRYDGLVEQFGGPPTPAVGFAIGIERLLLLLEELGL------ESVDVYVVVL--GEEAE 336 (417)
T ss_pred EC--------CCCCCCEEECCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCC------CCCCEEEEEC--CHHHH
T ss_conf 37--------87650104258731578998489978747898639999999996487------8776799965--98999
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHCC
Q ss_conf 99999999999879839997189999889999998779989999887287488189978788836433112014432023
Q gi|254780928|r 391 SKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREAR 470 (496)
Q Consensus 391 ~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~~~~~ 470 (496)
T Consensus 337 ~~a~~i~~~Lr~~gi~v~~~~~-~~~l~k~~~~A~~~~~~~~vivG~~E~~~~~v~vk~l~~g~q--------------- 400 (417)
T PRK00037 337 AAALKLAEKLRAAGIRVELDLG-GRKLKKQFKYADKSGARFALILGEDELANGTVTLKDLRTGEQ--------------- 400 (417)
T ss_pred HHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCE---------------
T ss_conf 9999999999988996999589-989999999999879799999874488679689998999971---------------
Q ss_pred CCCEEECHHHHHHHHHHHHH
Q ss_conf 35103079999999999998
Q gi|254780928|r 471 VAQITIPISELVSTVKKILQ 490 (496)
Q Consensus 471 ~~q~~v~~~~l~~~~~~~l~ 490 (496)
T Consensus 401 ---~~v~~~~l~~~lk~~l~ 417 (417)
T PRK00037 401 ---ETVALDELVEFLKELLG 417 (417)
T ss_pred ---EEEEHHHHHHHHHHHHC
T ss_conf ---79659999999999749