HHsearch alignment for GI: 254780928 and conserved domain: PRK08661
>PRK08661 prolyl-tRNA synthetase; Provisional.
Probab=99.89 E-value=3.4e-21 Score=156.80 Aligned_cols=338 Identities=20% Similarity=0.206 Sum_probs=210.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEC----CCCCEEEEC
Q ss_conf 0379987658866899999999999999998598480165202288752026755433322168986----999889998
Q gi|254780928|r 9 AELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQD----DDGQWISLR 84 (496)
Q Consensus 9 ~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D----~~g~~l~LR 84 (496)
T Consensus 31 ~~~VkG~~v~~P~g~~iw~~i~~~~~~~~~~~g~~~~~fP~liP~~~l~kE~~hvegF~pE~~~VT~~G~~~l~~~l~lr 110 (478)
T PRK08661 31 YSPVKGCMVIRPYGYAIWENIQKILDEMFKETGHENVYFPLLIPESLLQKEAEHIEGFAPEVAWVTHGGGEKLEEPLALR 110 (478)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 36887279978748999999999999999863980873024066899986665661567404899547875556763108
Q ss_pred CCCH----HHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCCCC-CCCCCCCCCHHHHHCCCHHHHHH---HHHHHHHHH
Q ss_conf 8883----899999995112055411233101333025-87644-42111110001210000245788---999999999
Q gi|254780928|r 85 YDLT----APLARYVAENFDTIVFPCRTYRIGPVFRNE-KHGPG-RFRQFIQCDVDNVGSSAETADAE---MCMMMADTL 155 (496)
Q Consensus 85 pDlT----~~~aR~~~~~~~~~~~p~k~yy~g~vfR~e-~p~~G-r~REf~Q~g~eiiG~~~~~~DaE---ii~l~~~~l 155 (496)
T Consensus 111 PTsEt~i~~~~~~wI~Syr---dLPl~l~Qw~~v~R~E~r~r~flR~rEFl~qe~ht~h~t~eea~~~~~~~~~~Y~~~~ 187 (478)
T PRK08661 111 PTSETIIYPMFKKWIQSYR---DLPLLYNQWVNVVRWEKKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFA 187 (478)
T ss_pred CCCHHHHHHHHHHHHHHHH---HCCCEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8879999999999852365---2690002004458657889631434263542120113999999999999999999999
Q ss_pred H-HCCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCH
Q ss_conf 7-518887771130366055899999832560356433455533322001289678998621016500355530489997
Q gi|254780928|r 156 E-AVGIKRNDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTS 234 (496)
Q Consensus 156 ~-~lgl~~~~~~I~in~~~il~~il~~lgi~~~~~~~~~~~~~~~idkl~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 234 (496)
T Consensus 188 e~~LaiPv----i-~g~-------------k~~~---------------ekFa---------------------Ga~~T- 212 (478)
T PRK08661 188 EDYLAIPV----I-IGK-------------KTEW---------------EKFA---------------------GADYT- 212 (478)
T ss_pred HHHCCCCE----E-CCC-------------CCCC---------------CCCC---------------------CCCCC-
T ss_conf 98378755----6-377-------------7830---------------2178---------------------98654-
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCC
Q ss_conf 78998887404785688998998603573258889999999999875088844300110100122123412489985466
Q gi|254780928|r 235 EQIDIMVSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCVYEAILGFP 314 (496)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRgLdYYTG~vFE~~~~~~ 314 (496)
T Consensus 213 ~~iea----~m~dGk------------------aL----------Q-~g--t---sH~L----Gq~f--skaf~i~f~d~ 248 (478)
T PRK08661 213 YTIEA----MMPDGK------------------AL----------Q-IG--T---SHYL----GQNF--AKAFDIKFQDK 248 (478)
T ss_pred CEEEE----ECCCCC------------------EE----------E-CC--C---EECC----CHHH--HHHCCCEEECC
T ss_conf 20588----726886------------------31----------1-43--1---4216----2235--67549699889
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC--CEEEECCHHHHHHHHHCC-----CCCCCCCCCCEEEEEEECCCH
Q ss_conf 6776766631011003232355211123456774--213311016899999736-----877665557714899826976
Q gi|254780928|r 315 VMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPA--TGFSIGISRLIVALKSLE-----SSTNNIKEMGPVLITTMDHDS 387 (496)
Q Consensus 315 ~~~~~~~~~~~~aI~~GGRYD~L~~~f~~~~~pa--vGfaigverl~~~l~~~~-----~~~~~~~~~~~v~V~~~~~~~ 387 (496)
T Consensus 249 ---------------------------~g~~~~~~~ts~Gis-tR~iga~Im~H~Dd~GlvlPp~iAP~qVvIvPi~~~~ 300 (478)
T PRK08661 249 ---------------------------DGKLEYVHQTSWGVS-TRLIGALIMVHGDDKGLVLPPKIAPIQVVIIPILKKK 300 (478)
T ss_pred ---------------------------CCCEEEEEEECCCHH-HHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCCC
T ss_conf ---------------------------998867887534542-7899999998479986517845598308999845788
Q ss_pred ---HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHH
Q ss_conf ---89999999999999879839997189999889999998779989999887287488189978788836433112014
Q gi|254780928|r 388 ---DSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNE 464 (496)
Q Consensus 388 ---~~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~ 464 (496)
T Consensus 301 ~~~~v~~~~~~i~~~L~~~girv~~Ddrd-~~pG~Kf~~~elkGvPlRieiGprDle~~~v~v~RRDt~e---------- 369 (478)
T PRK08661 301 EEEEVLEYAKELAEELKAAGIRVKLDDRD-KTPGWKFYEWELKGVPLRIEIGPRDLENNTVVLVRRDTLE---------- 369 (478)
T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEECCC-CCHHHHHHHHHHCCCCEEEEECCCHHCCCEEEEEECCCCC----------
T ss_conf 78999999999999998779079981766-5665666661014785899977201028979999867986----------
Q ss_pred HHHHCCCCCEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 4320233510307999999999999864204
Q gi|254780928|r 465 SWREARVAQITIPISELVSTVKKILQENKEE 495 (496)
Q Consensus 465 ~~~~~~~~q~~v~~~~l~~~~~~~l~~~~~~ 495 (496)
T Consensus 370 --------K~~v~~~~l~~~v~~lL~~Iq~~ 392 (478)
T PRK08661 370 --------KETVSLDELVEEVPELLDEIQEN 392 (478)
T ss_pred --------CEEECHHHHHHHHHHHHHHHHHH
T ss_conf --------14665999999999999999999