HHsearch alignment for GI: 254780928 and conserved domain: PRK09194
>PRK09194 prolyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=1.6e-32 Score=230.42 Aligned_cols=458 Identities=18% Similarity=0.206 Sum_probs=255.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCC
Q ss_conf 71037998765886689999999999999999859848016520228875202675543332216898699988999888
Q gi|254780928|r 7 LRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYD 86 (496)
Q Consensus 7 ~~~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpD 86 (496)
T Consensus 31 ~Ir~~~sGiy~~LPlg~rvl~Kie~IIr~em~~iGa~Ev~mp~l~p~el-W~~sgR~~~~g~el~r~kDR~~~~~~L~PT 109 (570)
T PRK09194 31 YIRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAEL-WQESGRWEKYGPELLRLKDRHGRDFVLGPT 109 (570)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH-HHHCCCHHHCCHHHEEEECCCCCEEEECCC
T ss_conf 7341437725542436999999999999999864987985356797789-876188212361346985278985653787
Q ss_pred C---HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCCCHHHH---HHHHHHHHHHHHH
Q ss_conf 8---3899999995112055411233101333025-87644--421111100012100002457---8899999999975
Q gi|254780928|r 87 L---TAPLARYVAENFDTIVFPCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSSAETAD---AEMCMMMADTLEA 157 (496)
Q Consensus 87 l---T~~~aR~~~~~~~~~~~p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~~~~~D---aEii~l~~~~l~~ 157 (496)
T Consensus 110 hEE~it~lv~~~i~--SYkqLP~~lYQIqtKfRDE~RPR~GllR~REF~MKDaYSFd~~~e~l~~tY~~~~~AY~~IF~r 187 (570)
T PRK09194 110 HEEVITDLVRNEIK--SYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFTR 187 (570)
T ss_pred CHHHHHHHHHHHHC--CHHHCCHHEECCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38999999998511--3764680200132333477887676234565345124566699899999999999999999998
Q ss_pred CCCCCCCCEEECCCCHHHHHH----HHHHCCCHHHHHHHHHHHHHH--HHHCCCC----CHHHHHHHHHH---CCCCHHH
Q ss_conf 188877711303660558999----998325603564334555333--2200128----96789986210---1650035
Q gi|254780928|r 158 VGIKRNDYHIGINNRKILDGI----LEKIGLHGDDKLNERLIVLRA--IDKLDKF----GLQGVKLLLGE---GRTDNSG 224 (496)
Q Consensus 158 lgl~~~~~~I~in~~~il~~i----l~~lgi~~~~~~~~~~~~~~~--idkl~k~----~~~~~~~~l~~---~~~~~~~ 224 (496)
T Consensus 188 lgL~---~~~v~ADsG~iGG~~ShEF~~~s~~GED~i~~C~~c~yaaN~E~A~~~~~~~~~~~~~~~~e~v~TP~~~TIe 264 (570)
T PRK09194 188 LGLD---FRAVEADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIEKAEALPPPEPRAAPTEELEKVDTPNAKTIE 264 (570)
T ss_pred HCCC---EEEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCHHH
T ss_conf 0986---2999914667588665237876378971799968976056487751147766675430003042599962199
Q ss_pred HHHCCCCCCHHHHHH--------------HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HHHHHCCCCC
Q ss_conf 553048999778998--------------8874047856889989986035732588899999999----9987508884
Q gi|254780928|r 225 DFTKGANLTSEQIDI--------------MVSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVIS----ELVRKSGYNS 286 (496)
Q Consensus 225 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~i~----~~l~~~gv~~ 286 (496)
T Consensus 265 ~l~~~~~v~~~~~iKtl~~~~~~~~~~~~v~v~irGD~evNe~Kl~~~~~~~~l~~a~~eei~~~~g~~~G~iGPv~~~- 343 (570)
T PRK09194 265 ELAEFLNVPAEKTVKTLLVKADEEGEGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRKLFGAPPGFLGPVNLP- 343 (570)
T ss_pred HHHHHHCCCHHHHEEEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-
T ss_conf 9998749998881356899842178873589982265200489887403753122489999997518987755666788-
Q ss_pred CCCCCCHHHCCCCCCC----------CCEEEEEEE----CCCCCCCCCCCCC--------------EEEECC-CCCCCCC
Q ss_conf 4300110100122123----------412489985----4666776766631--------------011003-2323552
Q gi|254780928|r 287 NRIKISSTIVRGLEYY----------TGCVYEAIL----GFPVMNEKQKPVV--------------FGSVGG-GGRYDGL 337 (496)
Q Consensus 287 ~~i~~Dl~lvRgLdYY----------TG~vFE~~~----~~~~~~~~~~~~~--------------~~aI~~-GGRYD~L 337 (496)
T Consensus 344 v~ii~D~~v~~~~n~v~GAN~~d~H~~~vn~~RD~~~~~~~Di~~v~~GD~Cp~c~~~L~~~rgIEVGHiF~LGtkYS~~ 423 (570)
T PRK09194 344 IPIIADRSVADMSNFVVGANEDDKHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTKYSEA 423 (570)
T ss_pred CEEEEEHHHHHHCCHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCHH
T ss_conf 14997034521000100358876454067656567864311255525688898899712774036888763123301462
Q ss_pred CC-CC---CCCCCCCC--EEEECCHHHHHHHHHCCCCCCCCC-----CCCEEEEEEEC-CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 11-12---34567742--133110168999997368776655-----57714899826-976899999999999998798
Q gi|254780928|r 338 VS-RF---KGQNVPAT--GFSIGISRLIVALKSLESSTNNIK-----EMGPVLITTMD-HDSDSLSKYQMYTQMLRTAGI 405 (496)
Q Consensus 338 ~~-~f---~~~~~pav--Gfaigverl~~~l~~~~~~~~~~~-----~~~~v~V~~~~-~~~~~~~~~~~ia~~Lr~~Gi 405 (496)
T Consensus 424 m~a~~~d~~Gk~~p~~MGCYGIGVsRllaAiiEq~~De~Gi~WP~~IAPf~V~Ii~~~~~~~~~~~~ae~iy~~L~~~Gi 503 (570)
T PRK09194 424 MNATFLDENGKAQPLTMGCYGIGVSRLVAAAIEQNHDERGIIWPKAIAPFDVHIVPVNMKDEEVRELAEKLYAELLAAGI 503 (570)
T ss_pred CCCEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 09879998898976145620024678999999983777754078886884999996799988999999999999997899
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHHHHHHH
Q ss_conf 39997189999889999998779989999887287488189978788836433112014432023351030799999999
Q gi|254780928|r 406 RAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTV 485 (496)
Q Consensus 406 ~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~l~~~~ 485 (496)
T Consensus 504 dVllDD-R~er~G~Kf~DaDLIGiP~~vvvGkk~l~~g~vEvk~R~~~~~------------------~~v~~~el~~~v 564 (570)
T PRK09194 504 DVLLDD-RKERPGVKFADAELIGIPHRIVVGKRGLAEGIVEYKNRRTGEK------------------EEVKLDELVEFL 564 (570)
T ss_pred EEEEEC-CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCE------------------EEECHHHHHHHH
T ss_conf 899989-9988536667516418997999926740158599999068975------------------886199999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780928|r 486 KKILQ 490 (496)
Q Consensus 486 ~~~l~ 490 (496)
T Consensus 565 ~~ll~ 569 (570)
T PRK09194 565 KELLK 569 (570)
T ss_pred HHHHC
T ss_conf 99855